mRNA_H-elongata_contig13329.2365.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13329.2365.1 vs. uniprot
Match: D7G7X5_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X5_ECTSI) HSP 1 Score: 420 bits (1079), Expect = 5.450e-134 Identity = 288/625 (46.08%), Postives = 344/625 (55.04%), Query Frame = 1
Query: 1 MSAIRSAMTERPVDPKETVIGANRLPVIPPDSCHRADMKSYLSVRTSLRTALSIEDYLAALRKLGGTLGHS--GMIRQRGGGDCRLGVPVKWVKHQLPGAEIAYQVYGRHRGKSELAQLWKDMKRDTVSINGRVLKGEVGPEAIVGALMRCILAQAGRLPASDSLSKLSEAQSLLTARDVLLACDRTTSGGDTYLVADNLCRNPDLVVLVPASQEAEPLEIQVTLHPRVPA----------------------------------------------------------------KAPPWSRR--------GNSGDRPLVSMCSP----------------------ELP-----TTPLSASPIGARLPLAPPDTPTPPSMNLCHNSRGHKYKKTA----GLVR-------DRYAKPSIELDHFIGGRSTDARSSGARS-VGGSGIFTSFARRWG-----GRTSQGIHSREGSSTSTTPSMV---DDTSAGREESRMGRGPAFASAGATTSRSLFVEDTTDEGGHGSDSTGDESTGDGRSSRRSHIRVACTARTSYKLFSSDPQDE-RDVYALITGLFEQTFTISRELPAGIGRRTASGIGTATYTEGSVAFLTFREPHIRRESI 1509
+SAI++AMTERPV+P ET++G ++LP+IP DSCHR M+SYLS R LR A S EDYL+AL+ L +G G +++ G D +GVPVKWVK QLPG+E YQ GR RGKSELAQLWKDMKRDTVSINGRV+ GE GPE I+GAL RCILAQAGRL ASDSLSKLSEAQSLL ARDVLLACDRTTSGGDTYLV DNLCRNP LVVLVPASQEAEPL+I VTLHPR ++PP +R G GD + P ++P T + S +G R +AP P PP M + G A GL R + A P+ + + T G S G GIF S ARR G + + S S + D + G +E + G + A A A S +F DT D+GG S S+ DE DG R S+I+V CTARTSYKLFSSDPQDE RDVYA++TGLFEQ+FTISRE PAG G R +SG+G AT TEGSVAFLTF +P I+R+S+
Sbjct: 52 VSAIKAAMTERPVNPDETILGEDQLPIIPHDSCHRHHMESYLSARGFLRNATSTEDYLSALKGLMAEVGRGTGGGLQEGGEKDSSMGVPVKWVKQQLPGSERVYQASGRGRGKSELAQLWKDMKRDTVSINGRVMTGERGPEGIIGALTRCILAQAGRLSASDSLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVDNLCRNPPLVVLVPASQEAEPLDITVTLHPRAAQVQTQGHKQSPSRHYRHTIDGGTKGPQPNSPPSPGELPEXXXXSSLGSGSAAASPSFGHRSSGVQRSPPSARNSEGGFTSPGGGGDGDTKAQHQPVGKGGGRNGVQTGGGVKRRGRLKIPGSGRVTLTRTGSAMGGR--VAPTTLPVPPDMRQAASWDGGTQSLAATAPAGLGRPWAEDEGEAVASPTGQRKPGLVSSKTYGADGGEGSGATGGGIFASLARRRSVDQAAGYSGSNVGLNSKRSVPYAMSAIGQGDSSGKGHKEGGVRGGLSSAPAAALASYKMFFGDT-DDGGEESGSSNDEE--DGPLFRTSYIQVTCTARTSYKLFSSDPQDEERDVYAVVTGLFEQSFTISREFPAGSGSRASSGMGNATRTEGSVAFLTFHDPAIKRQSL 671
BLAST of mRNA_H-elongata_contig13329.2365.1 vs. uniprot
Match: A0A6H5KYY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYY2_9PHAE) HSP 1 Score: 161 bits (407), Expect = 6.390e-39 Identity = 153/444 (34.46%), Postives = 193/444 (43.47%), Query Frame = 1
Query: 544 CDRTTSGGDTYLV-ADNLCRNPDLVVLVPASQEAEPLEIQVTLHPRVPAK----------------------------------------------------------------APPWSRR----------GNSGD-------------------------RPLVSMCSPELPTTPLSASPIGARLPLAPPDTPTPPSMNLCHNSRGHKYKKTA----GLVR-------DRYAKPSIELDHFIGGRSTDARSSGARS-VGGSGIFTSFARR--------WGGRTSQGIHSREG-SSTSTTPSMVDDTSAGREESRMGRGPAFASAGATTSRSLFVEDTTDEGGHGSDSTGDESTGDGRSSRRSHIRVACTARTSYKLFSSDPQDE-RDVYALITGLFEQTFTISRELPAGIGRRTASGIGTATYTEGSVAFLTFREPHIRRESI 1509
C + G T + DNLCRNP LVVLVPASQEAEPL+I VTLHPR K +PP +R G GD R + + T + S +G R +AP P PP M + G A GL R + A P+ + + T G S G GIF S ARR + G ++ G++S+ S + D + G +E + G + A A A S +F DT D+GG S S+ DE DG RRS+I+V CTARTSYKLFSSDPQDE RDVYA++TGLFEQ+FTISRE PAG G R +SG+G AT TEGSVAFLTF +P I+ +S+
Sbjct: 63 CSSSRCGKPTDAIQVDNLCRNPPLVVLVPASQEAEPLDITVTLHPRAAQKQTQGHKQNPSRHYRHTIDGGTKGSQANSPPSPGELPEXXXXXXLGSASAAASRSFEHRSSGVQRSPPSARNSEGEFTSPGGGGDGDTKAQHQLVGKGGGRNGVQTGGGSKRRGRLKIPGSGRVTLTRTGSAMGGR--VAPTTLPVPPDMRQTASWEGGTQSLAATAPAGLGRPWAEDEGEAVASPTGQRKPGLVSSKTYGADGGEGSGPTGGGIFASLARRRSVDQAAGYSG-SNVGLNSKRSVPSAMSAMGQGDSSGKGHKEGGVRGGLSSAPAAALASYKMFFGDT-DDGGEESGSSNDEE--DGPLFRRSYIQVTCTARTSYKLFSSDPQDEERDVYAVVTGLFEQSFTISREFPAGSGSRASSGMGNATRTEGSVAFLTFHDPAIKHQSL 500
BLAST of mRNA_H-elongata_contig13329.2365.1 vs. uniprot
Match: A0A7S4HSG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HSG3_9STRA) HSP 1 Score: 140 bits (352), Expect = 4.060e-33 Identity = 97/224 (43.30%), Postives = 128/224 (57.14%), Query Frame = 1
Query: 82 IPPDSCHRADMKSYLSVRTSLRTALSIEDYLAALR--KLGGTLGHSGMIRQRGGGDCR-----------------LGVPVKWVKHQLPGAEIAYQVYG-RHRGKSE-LAQLWKDMKRDTVSINGRVLKGEV--GPEAIVGALMRCILAQ----AGRLPASDSLSK---LSEAQSLLTARDVLLACDRTTSGGDTYLVADNLCRNPDLVVLVPASQEAEPLEIQV 663
+P S +RAD++ YL+V+++++ A S E Y+ AL L G G G + D L VPV+W+K Q+ A V R G S +AQLWKDM RD+V+ING +LKG+ GPE IVGAL R I++ A A S + ++EAQS+ ARDVLLAC RT SGGD+Y DNLC N DLVVL P++ EAEPL+I+V
Sbjct: 3 VPSRSPYRADLEQYLAVQSAVKKASSREAYMRALSVLMLPGGAGGGGSVLPSPPSDLASQASDAGSAQSQPSGRSLNVPVQWIKEQVEVASGGDGVRAFREEGVSTGIAQLWKDMSRDSVTINGELLKGDSPHGPECIVGALTRSIMSHDRSAAQNTAAPSSYRRKFAINEAQSVSYARDVLLACSRTRSGGDSYYCVDNLCSNSDLVVLCPSTAEAEPLKIEV 226
BLAST of mRNA_H-elongata_contig13329.2365.1 vs. uniprot
Match: A0A6U3S3W6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3S3W6_9STRA) HSP 1 Score: 130 bits (326), Expect = 1.620e-28 Identity = 80/205 (39.02%), Postives = 119/205 (58.05%), Query Frame = 1
Query: 79 VIPPDSCHRADMKSYLSVRTSLRTALSIEDYLAALRKLGGTLGHSGMIRQRGGGDCRLGVPVKWVKHQ---LPGAEIAYQVYGRHRGKSELAQLWKDMKRDTVSINGRVLKGEVG--PEAIVGALMRCILA---QAGRLPASDSLSK--LSEAQSLLTARDVLLACDRTTSGGDTYLVADNLCRNPDLVVLVPASQEAEPLEIQV 663
++PP+S ++ +++ YL V+ ++ A S E+Y+ L L G L VPV+W+K L ++ A + + + ++QLWKDM RD+VSING + G+ G PE I+G L RCI+ + R S+ + K ++E+ +L ARDVLL+C+RT SGGD+Y D LC NPDLVVL P+S AEPL + V
Sbjct: 185 IVPPNSPYKQNLEEYLRVQKGVKNATSKEEYVGMLSLLCGV---------------PLNVPVQWIKEHVETLSSSQNASKAFEEDSVSNGISQLWKDMLRDSVSINGDLFAGDSGHGPEQIIGELTRCIMKFDRMSLRNVDSNVMKKFRITESMALSYARDVLLSCNRTRSGGDSYYCVDTLCSNPDLVVLCPSSTVAEPLTVTV 374
BLAST of mRNA_H-elongata_contig13329.2365.1 vs. uniprot
Match: A0A7S2U7T9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7T9_9STRA) HSP 1 Score: 127 bits (318), Expect = 1.800e-27 Identity = 82/207 (39.61%), Postives = 117/207 (56.52%), Query Frame = 1
Query: 82 IPPDSCHRADMKSYLSVRTSLRTALSIEDYLAALRKLGGTLGHSGMIRQRGGGDCRLGVPVKWVKHQLPGAEIAYQVYGRHRGKSE-----LAQLWKDMKRDTVSINGRVLKGEV--GPEAIVGALMRCILAQAGRLPASDSLS------KLSEAQSLLTARDVLLACDRTTSGGDTYLVADNLCRNPDLVVLVPASQEAEPLEIQV 663
IP S + D+ YL V+T ++TA S YL +L++ G L VPV+W++ + + + + G + E + QLWKDM RD+VSING++ KG+ GPE I+GAL RCI+ R+ S + +++EAQ+L ARDVLLAC+RT SGGD+Y D LC N LV L P+S EA+P++I V
Sbjct: 160 IPAQSPFKNDLIHYLKVQTKIKTARSKTHYLGSLKRCVGV---------------PLNVPVQWIREHVESSSSS--ITGAEAFREEDVSVGMKQLWKDMLRDSVSINGKIYKGDDPHGPERIMGALARCIM----RVDRSTEQAHIGDKHRITEAQALSYARDVLLACNRTRSGGDSYYCFDTLCNNSHLVALCPSSTEADPMKIVV 345
BLAST of mRNA_H-elongata_contig13329.2365.1 vs. uniprot
Match: A0A7S1ZZ15_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZZ15_TRICV) HSP 1 Score: 116 bits (290), Expect = 1.020e-26 Identity = 69/149 (46.31%), Postives = 94/149 (63.09%), Query Frame = 1
Query: 250 LGVPVKWVKHQLPGAEIAYQVYGRHRGKSE--LAQLWKDMKRDTVSINGRVLKGEVG--PEAIVGALMRCILAQ----AGRLPASDSLSK---LSEAQSLLTARDVLLACDRTTSGGDTYLVADNLCRNPDLVVLVPASQEAEPLEIQV 663
L VPV+W+K Q+ + A H + QL+KDM+RD+V ING + KG+ G PE I+GAL R I+ A + A+ + + ++EAQ++ ARDVLLAC+RT SGGD+Y DNLC N DLVV+ P++ EAEPL IQV
Sbjct: 11 LNVPVQWIKEQVEVSSAANSEKAFHEEGVAGCVTQLFKDMQRDSVIINGELYKGDSGHGPERIIGALSRSIIKHDRTAAQNIQAAAAFKRKFGITEAQAISYARDVLLACNRTRSGGDSYFCVDNLCSNQDLVVVCPSTAEAEPLRIQV 159
BLAST of mRNA_H-elongata_contig13329.2365.1 vs. uniprot
Match: A0A1Z5JSL6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSL6_FISSO) HSP 1 Score: 118 bits (296), Expect = 1.550e-24 Identity = 80/216 (37.04%), Postives = 120/216 (55.56%), Query Frame = 1
Query: 82 IPPDSCHRADMKSYLSVRTSLRTALSIEDYLAALRKLGGTLGHSGMIRQRGGGDCRLGVPVKWVKHQ--LPGAEIAYQVYGRHRGKSELAQLWKDMKRDTVSINGRVLKGEVG--PEAIVGALMRCIL--AQAGRLPASDSLSKLSEAQSLLTARDVLLACDRTTSGGDTYLVADNLCRNPDLVVLVPASQEAEPLEIQV-------TLHPRVPAK 690
I P S R D++ + ++ +R A S++DY+A LR G L HS L VP+KW+ Q + G + + + QLW+D +RD++ I+G V +G+VG PE I AL+R IL +Q G D+ LSE+Q+L ARD LLA +RT +GGD+Y +LC+N +LVV+VP + E EP ++V +LH R+ +K
Sbjct: 305 IDPRSPFRDDLRLFAKSQSKMRNARSMQDYIAELR---GILNHS------------LEVPIKWIARQAIISGGDEMEGAFREETIDLSVDQLWRDQQRDSIKIDGVVYQGDVGHGPERITAALLRRILDVSQTG-----DAARSLSESQALALARDALLAGNRTRTGGDSYFCIKSLCKNDNLVVIVPKAGEVEPTSLEVCEDNSDNSLHSRLDSK 500
BLAST of mRNA_H-elongata_contig13329.2365.1 vs. uniprot
Match: K0TJJ1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TJJ1_THAOC) HSP 1 Score: 116 bits (290), Expect = 2.910e-24 Identity = 89/226 (39.38%), Postives = 120/226 (53.10%), Query Frame = 1
Query: 1 MSAIRSAMTERPVDPKETVIGANRLPVIPPDSCHRADMKSYLSVRTSLRTALSIEDYLAALRKLGGTLGHSGMIRQRGGGDCRLGVPVKWVKHQL-----PGAEIAYQVYGRHRGKSELAQLWKDMKRDTVSINGRVLKGEVGPEAIVGALMRCILAQAGRLPASDSLSKLSEAQSLLTARDVLLACDRTTSGGDTYLVADNLCRNPDLVVLVPASQEAEPLEIQV 663
+ AIR AM P + A RLP P S + +R + +A S E+YL A+ ++R D L VPV +VK PG V +LAQ+WKD++RD V +NGRVL GE PE I+G+L IL+ R +D ++E+Q++ ARDVLLACDRT S GD+YL A+NLC N D+VVL PAS A+P+ I+V
Sbjct: 162 VEAIRRAMAGPPSAVVDGYSPAKRLPDSSPYSM-------FAVIRDATSSARSKEEYLQAIE----------LMR-----DKSLQVPVNFVKVNYAALGSPGDHAQTDV------TEDLAQMWKDLRRDFVDVNGRVLSGEPFPEPIMGSLALEILS---RYHGND----VTESQAVSCARDVLLACDRTKSSGDSYLCAENLCLNRDMVVLCPASTGAKPISIRV 352
BLAST of mRNA_H-elongata_contig13329.2365.1 vs. uniprot
Match: A0A7S1VEQ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VEQ9_9STRA) HSP 1 Score: 115 bits (287), Expect = 2.000e-23 Identity = 77/204 (37.75%), Postives = 113/204 (55.39%), Query Frame = 1
Query: 103 RADMKSYLSVRTSLRTALSIEDYLAALRKLGGTLGHSGMIRQRGGGDCRLGVPVKWVKHQLPGAEIAYQVYGRHRGKSELAQLWKDMKRDTVSINGRVLKGEVG--PEAIVGALM-------RCILAQAGRL-------PASDSLSKLSEAQSLLTARDVLLACDRTTSGGDTYLVADNLCRNPDLVVLVPASQEAEPLEIQVT 666
+ D++ YL ++ +R A + Y++AL I + G G L VPV W++ Q E +++ S + QLWKD+ RDTV +NG + +G G PE I+GAL R I+ Q+GR+ P +++SE Q+L ARD+LLA +RT SGGD+Y D LCRN DLVV P S EAEPL+++++
Sbjct: 501 KKDLEKYLRIQKDIRGATDKDTYVSAL------------ITKMGVGTS-LKVPVIWIE-QNSMFEDPDKIFKEEGVSSSVDQLWKDLFRDTVRVNGELFQGGSGHAPERIIGALTKEILSYDRSIMQQSGRVGFVNTASPNKRRKNEISEVQALAYARDILLAGNRTRSGGDSYYCVDALCRNADLVVATPRSAEAEPLQVKIS 690
BLAST of mRNA_H-elongata_contig13329.2365.1 vs. uniprot
Match: B8C5V8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5V8_THAPS) HSP 1 Score: 112 bits (281), Expect = 1.000e-22 Identity = 76/198 (38.38%), Postives = 109/198 (55.05%), Query Frame = 1
Query: 82 IPPDSCHRADMKSYLSVRTSLRTALSIEDYLAALRKLGGTLGHSGMIRQRGGGDCRLGVPVKWVKHQLPGAE-IAYQVYGRHRGKSELAQLWKDMKRDTVSINGRVLKGEV--GPEAIVGALMRCILAQAGRLPASDSL-SKLSEAQSLLTARDVLLACDRTTSGGDTYLVADNLCRNPDLVVLVPASQEAEPLEIQV 663
+P +S + A ++ YL VR ++ A S +DYL AL L G + +P++W+K QL + A+Q G + QLWKD+ RD+V ING+V+ GE GP+ I+G L + I+ D S ++E Q++ ARD++LA DRT SGGD+Y +NLC N DLVV+ P S A PL I V
Sbjct: 290 LPKNSPYSAFIEQYLQVREAINGAESKQDYLKALSILRGK---------------SIMIPIQWLKTQLDDSTPTAFQEADMSSG---VDQLWKDLLRDSVEINGQVISGESFHGPDRIIGNLTQLIIHHNQYNSCHDGKQSSITEVQAVSYARDIMLATDRTRSGGDSYYCIENLCLNRDLVVICPTSTVAAPLSITV 469 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13329.2365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13329.2365.1 >prot_H-elongata_contig13329.2365.1 ID=prot_H-elongata_contig13329.2365.1|Name=mRNA_H-elongata_contig13329.2365.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=503bp MSAIRSAMTERPVDPKETVIGANRLPVIPPDSCHRADMKSYLSVRTSLRTback to top mRNA from alignment at H-elongata_contig13329:4619..8073- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13329.2365.1 ID=mRNA_H-elongata_contig13329.2365.1|Name=mRNA_H-elongata_contig13329.2365.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3455bp|location=Sequence derived from alignment at H-elongata_contig13329:4619..8073- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13329:4619..8073- >mRNA_H-elongata_contig13329.2365.1 ID=mRNA_H-elongata_contig13329.2365.1|Name=mRNA_H-elongata_contig13329.2365.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3018bp|location=Sequence derived from alignment at H-elongata_contig13329:4619..8073- (Himanthalia elongata Himel1 dioecious)back to top |