mRNA_H-elongata_contig13327.2363.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13327.2363.1
Unique NamemRNA_H-elongata_contig13327.2363.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13327.2363.1 vs. uniprot
Match: A0A6H5JS60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS60_9PHAE)

HSP 1 Score: 297 bits (761), Expect = 1.000e-93
Identity = 154/205 (75.12%), Postives = 174/205 (84.88%), Query Frame = 2 
Query:    8 SSRQQFTQTLVRSGVLGLATVLSPLASRPARAAAASLEELEADLMLCKEVFKPTLQYLKAEQFDAARTNTNYITRFINLKKKIDAFIVATNDVIDDVDK---LETAFEMAQEVEALFTNFDSSVYTIIFIPADASGVLPPGAEKYLKQAYGYYNDINKVLDFYISLAPTEVKQAAEKLLPAKKAALPKFLFKQDSALMKERVSVS 613
            SSR ++ +T++  G LGLAT  SP  S+ A AAA SLEELEAD+M+CKEVFKPTLQYLKAEQFDAARTNTNYITRF NLKKKID+FIV  +DV+DD D    +E AF+MAQEVEALFTNFDSSVYTIIFIPADA GVLPPGAEKYLKQAYG+Y+DINKVLDFYI L P E K AAEKLLPAK+A LP FLFK+ S LMKE+V++S
Sbjct:   66 SSRGEYVKTVLGGGALGLATAFSPALSKRAEAAAQSLEELEADIMICKEVFKPTLQYLKAEQFDAARTNTNYITRFFNLKKKIDSFIVQASDVVDDPDTASFIEKAFDMAQEVEALFTNFDSSVYTIIFIPADAEGVLPPGAEKYLKQAYGFYDDINKVLDFYIDLVPPETKAAAEKLLPAKRAPLPGFLFKEKSTLMKEKVAIS 270
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BLAST of mRNA_H-elongata_contig13327.2363.1 vs. uniprot
Match: D7FL66_ECTSI (TPT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL66_ECTSI)

HSP 1 Score: 297 bits (760), Expect = 3.190e-88
Identity = 151/200 (75.50%), Postives = 171/200 (85.50%), Query Frame = 2 
Query:    8 SSRQQFTQTLVRSGVLGLATVLSPLASRPARAAAASLEELEADLMLCKEVFKPTLQYLKAEQFDAARTNTNYITRFINLKKKIDAFIVATNDVIDDVDKLETAFEMAQEVEALFTNFDSSVYTIIFIPADASGVLPPGAEKYLKQAYGYYNDINKVLDFYISLAPTEVKQAAEKLLPAKKAALPKFLFKQDSALMKERVS 607
            SSR ++ +T++  G LGLAT  SP  S+ A AAA SLEELEAD+M+CKEVFKPTLQYLKAEQFDAARTNTNYITRF NLKKKID+FIV  +DV++D D +E AF+MAQEVEALFTNFDSSVYTIIFIPADA GVLPPGAEKYLKQAYG+Y+DINKVLDFYI L P E K AAEKLLPAK+A LP FLFK+ S LMKE+ +
Sbjct:   68 SSRGEYVKTVLGGGALGLATAFSPALSKRAEAAAQSLEELEADIMICKEVFKPTLQYLKAEQFDAARTNTNYITRFFNLKKKIDSFIVQASDVVEDPDTMEKAFDMAQEVEALFTNFDSSVYTIIFIPADADGVLPPGAEKYLKQAYGFYDDINKVLDFYIDLVPPETKAAAEKLLPAKRAPLPSFLFKEKSTLMKEKCA 267
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BLAST of mRNA_H-elongata_contig13327.2363.1 vs. uniprot
Match: A0A835YWX6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWX6_9STRA)

HSP 1 Score: 140 bits (353), Expect = 7.050e-35
Identity = 77/192 (40.10%), Postives = 114/192 (59.38%), Query Frame = 2 
Query:   11 SRQQFTQTLVRSGVLGLATVLSPLASRPARAAAASLEELEADLMLCKEVFKPTLQYLKAEQFDAARTNTNYITRFINLKKKIDAFIVATNDVIDDVDKLETAFEMAQEVEALFTNFDSSVYTIIFIPADASGVLPPGAEKYLKQAYGYYNDINKVLDFYISLAPTEVKQAAEKLLPAKKAALPKFLFKQDSA 586
            SR+ FT ++V  G     T  +      A A   + E+  A LM+CK V +P+ +Y K  QFD+ARTN NYITR + ++K I   I+    + DD   +E A ++A   ++ F+N+DSS+YT+IFIP    G LP G++KY  QA  YY+    +LD +ISLAP +V++ A     A+   LP+FLFK+ +A
Sbjct:    7 SRRSFTSSVVLGGAAAAFTAWTHPKVAQAAAPEQTFEDAVATLMVCKAVLEPSHKYFKLNQFDSARTNVNYITRQLGVRKAIGKVIIEGGAICDDEALVEEASDLAATADSTFSNYDSSIYTVIFIPPGEDGSLPKGSDKYFNQADVYYDQSVHMLDVFISLAPEDVRERARAKAEARVKELPRFLFKEFTA 198
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BLAST of mRNA_H-elongata_contig13327.2363.1 vs. uniprot
Match: A0A2V3IGD1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGD1_9FLOR)

HSP 1 Score: 60.5 bits (145), Expect = 2.030e-7
Identity = 40/123 (32.52%), Postives = 67/123 (54.47%), Query Frame = 2 
Query:  164 PTLQYLKAEQFDAARTNTNYITRFINLKKKID--AFIVATNDVIDDVDKLETAFEMAQEVEALFTNFDSSVYTIIFIPADASGVLPPGAEKYLKQAYGYYNDINKVLDFYISLAPTEVKQAAE 526
            P  +Y+    +D  RTN NY TR + L+K +   A  ++ +D  D       A ++  +++   T  D+S+YT +FIPAD  GV    A KY +QA  YY++    ++ ++S  PT+V + A+
Sbjct:    3 PVRRYIDEGAWDKGRTNVNYCTRMLALRKNMKKVAEQLSGDDYYD-------ALDITADLDNTMTQLDASLYTPLFIPAD-DGVSVEQA-KYQRQASEYYSNALDYIESFLSKLPTDVLERAQ 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13327.2363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JS60_9PHAE1.000e-9375.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL66_ECTSI3.190e-8875.50TPT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YWX6_9STRA7.050e-3540.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2V3IGD1_9FLOR2.030e-732.52Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13327contigH-elongata_contig13327:3325..6443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score258.1
Seed ortholog evalue2.8e-66
Seed eggNOG ortholog2880.D7FL66
KEGG koko:K15280
KEGG TC2.A.7
EggNOG free text desc.UDP-glucose transmembrane transport
EggNOG OGsCOG0697@1,KOG1443@2759
COG Functional cat.EG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons5
Model size1766
Cds size480
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929790.2319074-UTR-H-elongata_contig13327:3324..34631622929790.2319074-UTR-H-elongata_contig13327:3324..3463Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13327 3325..3463 +
1691679158.56562-UTR-H-elongata_contig13327:3324..34631691679158.56562-UTR-H-elongata_contig13327:3324..3463Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13327 3325..3463 +
1622929790.310148-UTR-H-elongata_contig13327:5296..64431622929790.310148-UTR-H-elongata_contig13327:5296..6443Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13327 5297..6443 +
1691679158.6234303-UTR-H-elongata_contig13327:5296..64431691679158.6234303-UTR-H-elongata_contig13327:5296..6443Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13327 5297..6443 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929790.2510674-CDS-H-elongata_contig13327:3463..34751622929790.2510674-CDS-H-elongata_contig13327:3463..3475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13327 3464..3475 +
1691679158.576777-CDS-H-elongata_contig13327:3463..34751691679158.576777-CDS-H-elongata_contig13327:3463..3475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13327 3464..3475 +
1622929790.2656734-CDS-H-elongata_contig13327:3715..38681622929790.2656734-CDS-H-elongata_contig13327:3715..3868Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13327 3716..3868 +
1691679158.585945-CDS-H-elongata_contig13327:3715..38681691679158.585945-CDS-H-elongata_contig13327:3715..3868Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13327 3716..3868 +
1622929790.2776208-CDS-H-elongata_contig13327:4174..42011622929790.2776208-CDS-H-elongata_contig13327:4174..4201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13327 4175..4201 +
1691679158.5969782-CDS-H-elongata_contig13327:4174..42011691679158.5969782-CDS-H-elongata_contig13327:4174..4201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13327 4175..4201 +
1622929790.2877486-CDS-H-elongata_contig13327:4629..47401622929790.2877486-CDS-H-elongata_contig13327:4629..4740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13327 4630..4740 +
1691679158.6073716-CDS-H-elongata_contig13327:4629..47401691679158.6073716-CDS-H-elongata_contig13327:4629..4740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13327 4630..4740 +
1622929790.29781-CDS-H-elongata_contig13327:5119..52961622929790.29781-CDS-H-elongata_contig13327:5119..5296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13327 5120..5296 +
1691679158.616018-CDS-H-elongata_contig13327:5119..52961691679158.616018-CDS-H-elongata_contig13327:5119..5296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13327 5120..5296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13327.2363.1prot_H-elongata_contig13327.2363.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13327 3464..5296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13327.2363.1

>prot_H-elongata_contig13327.2363.1 ID=prot_H-elongata_contig13327.2363.1|Name=mRNA_H-elongata_contig13327.2363.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
MLCKEVFKPTLQYLKAEQFDAARTNTNYITRFINLKKKIDAFIVATNDVI
DDVDKLETAFEMAQEVEALFTNFDSSVYTIIFIPADASGVLPPGAEKYLK
QAYGYYNDINKVLDFYISLAPTEVKQAAEKLLPAKKAALPKFLFKQDSAL
MKERVSVSG*
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mRNA from alignment at H-elongata_contig13327:3325..6443+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13327.2363.1 ID=mRNA_H-elongata_contig13327.2363.1|Name=mRNA_H-elongata_contig13327.2363.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3119bp|location=Sequence derived from alignment at H-elongata_contig13327:3325..6443+ (Himanthalia elongata Himel1 dioecious)
AGAGACTAGTTCACGCCAACAGTTCACGCAGACGCTTGTGAGATCGGGGG
TGTTAGGGCTGGCGACGGTACTTTCGCCGCTCGCATCACGACCGGCGAGA
GCCGCAGCGGCAAGCCTCGAGGAGCTGGAGGCCGACTTAATGCTCTGCAA
GGTACTTGTAATGCTCGCCGAATATTTCAGAAAAATGATTGAGAGCATCA
TTATCGAATGAATGTGTTTGGATGGATTCTCTCGATTCCATGTTGAACAT
CACGGTATTTTTCGAAGGGTTTCGCGTTATGTAGATGGCGTGCACAGCCA
CTCGCGTCCCACATGGGGGGCCGGGGGAGGGGAGGGCGTTACGAGCACCT
CGATGACGCTTTTGCCCTTTCCCCCCCGTCGAAAACGGCAGGAGGTATTC
AAACCAACGCTGCAGTACTTGAAGGCGGAGCAATTCGACGCCGCGCGCAC
GAATACGAACTACATAACGCGATTCATCAACCTCAAGAAAAAGATCGACG
CTTTCATTGTTGCCACCAACGACGTGATAGACGATGTTGACAAGGTGAGC
GCTTTTCCACGTGTAATGCTTCGTAATATGCTTCCAGTGTGTCGCTCGTG
TGTCAAGAGCCCCGAAGGCCGTGAAATCGCACTCGCTAACGGATAGGCAA
AGCGTGGAAACGGCGAGTCCCTTCGACGAACCGAGGCGTCGATATGTTTC
GATTACCTCCTCAAAAGCTATGCCTCCTCCTCATTCCCGCCGTTGATCAT
GGTTCTCGTACCTCCGTCCTAGTCCCTCGGCTCTCCGAACTGACGAGTAA
CCGCTGTTTTCTGTCTGGCTCCACCGTCCGCGCGCGGAAATCGATCTCAG
CTTGAAACTGCGTTTGAGATGGCACAGGTGAGCGCTAAGTGTCAAGTCGG
ACGAGACGGTTTCTCCACGCAAACTGCACCCTGCGTCTTAGCTGCCACAG
CCTGAAGCGACTTGATCATTAAACGCATTTCATCGCCCAGCTTGAGCAAT
CGGCAATCGCCATCATTTGGACATAGAAGATATTGTTTAGGATTTCCCCA
CTGAGTCCACGTCCCTCGCTGTTCGCCCTCCACGAGGGGCCGCTTTCATG
TGATCGAGCTTGGGAATATAATGGACTTTCAATCACTCATTCGAGTATTG
CGTGGATACCATCTACTAAGCTCGAGGCCCAGCGAGACCGAATACGGACT
TGTCGCTTCGAGGCTGCCCCGCCAAGGCTTTCTCCGAATACCTCGACTCG
CGAGATGGCTGACCTGATCCTTTGAACATTGGCCGGGCTCTTGTGTTCCG
TGCAGGAGGTCGAGGCCCTCTTCACGAACTTTGACTCGTCTGTGTACACG
ATCATCTTCATCCCTGCCGACGCTAGCGGTGTGCTTCCCCCTGGAGCAGA
AAAATATCTAAAGCAGGTATATTATTGAGGGGGTTCCTTTCAATTGACGC
TTGGTGAGGGAAGGATTGCCGATTGACTGTATATTTTGATAACTCTTTGG
GTTGACCTTTTCAAGCCCCCGGTGAACTTGCATGTGTCGGGACTCTCACG
AAGACACGGGCTCAAGTGAGACGCCTTCGAAAGAACCTTTATGTTGACTC
GCTTATAAACATACACCACGATACCGCAAGAACTCTCAAAGTAAAGCCAA
CACGTATGTCCTGACCTGGAGGATGTTTCACCGCCGTCTTATAGCAGCGT
GAGTGTGCGCGACCGAGGCAGCTCTGTCCTGTCATATTAAGGCACGCCAT
AGCCCTTGTAAGTAAGCCCTTGTGAACCCCGTCTTACGATGGCAGGCTTA
CGGGTACTACAACGACATCAACAAGGTCCTGGACTTTTACATCAGTCTCG
CGCCGACGGAGGTGAAGCAGGCCGCGGAGAAACTCCTGCCAGCGAAGAAG
GCTGCCCTCCCCAAGTTCTTGTTCAAGCAAGACTCCGCCCTCATGAAGGA
ACGGGTGTCAGTCAGCGGCTAGAATTTCCTGTTTTCTGCTAACGCTTCTC
CGTAGTTGTAGTTGTAGTCGAGGTGGCCTCGTTCGCAGCGCTTTTCGTGG
GCAAATTAGGATTTCACGTGATGACCATTTCCGTTCCGAAGGTAGAGTAG
ATACTGTACCTCTAGAGCTAATCGTACGGCAGAAGTACAAACGGCATAAG
TAGATAGATTAATGTGAAACAGACGCGCACAGACCGGCTGCACGCCTGCA
TTCCTTTTTCATTCAGTTATCTTGACTTCACAAGGCACCCTCGAGCTCGT
CGATATTTTGTTTTATCTCTTAAGTGATGCGGGGAGCCAGTGCATAGAAC
CGCGCCCATCTTTCAAGCATATCCGTCGCTGTTATATTACTGATGTACGG
TAGTGTGTAGTGTTGCGTTACTGAAGCGAGGAGCTCGCCGCATCCCCGAT
AAAATCTTGTAACCTCGAGTTACATGTATTTTTTAGGTTTTCAAACCCAG
CTTGGCAATCGCCAATGACCCTCTGCTCTTCGTTCGAGTACTCGGCGAAA
GTTCTCTTGTCCGAAATGTTAAATATATTAAAACCTGCTAACAAATATTC
TCCTACGAATGTAACTGTTACAAAACAGGGCTGCAGCTCTAGAGTCTATG
TGTCGTACAGTATGACTCTAATCAAGTACGGAGGTACACGTACACGCACA
CGTGCTCCTACTATATATAATATTGGATACCTCCAGGCAGTTTAGCTGGT
TGGCTTCACGATCAGTTGGACAGCGGTCCTGACTTCAAATCCCGGGGGAT
GGTGGCGCGGCTGTTTTATAGCGAAACGTCCAACTATTAAGTGAGGTGTG
TGATTCCTGAACCTGCATCGCGACAGATGTTTTCGAATTCGCTAGTGTGA
AACCGTCATATTATGAAGGAGTTAAACTAGATATCATTATAATAGTTACC
TAAACGAGGAATGTGCTTTATACTCCCCAGTGGGTAATATACGTCCCCAC
GTGTTCAGTGTTAGTACGTGTGTGTATTCAGTGTGTATTAGTTAGGTATC
TGTGTAATGGCGTGGCTGGAGAGCGAGCCCCTTCGGTATGTGAGTGGAGA
GGTCGGCAAGCGACCCCCCTCAGAGAATAATACATACTACGTCTATATAT
TTACCTACCCTGCAAGGCC
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Coding sequence (CDS) from alignment at H-elongata_contig13327:3325..6443+

>mRNA_H-elongata_contig13327.2363.1 ID=mRNA_H-elongata_contig13327.2363.1|Name=mRNA_H-elongata_contig13327.2363.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig13327:3325..6443+ (Himanthalia elongata Himel1 dioecious)
ATGCTCTGCAAGATGCTCTGCAAGGAGGTATTCAAACCAACGCTGCAGTA
CTTGAAGGCGGAGCAATTCGACGCCGCGCGCACGAATACGAACTACATAA
CGCGATTCATCAACCTCAAGAAAAAGATCGACGCTTTCATTGTTGCCACC
AACGACGTGATAGACGATGTTGACAAGGAGGTATTCAAACCAACGCTGCA
GTACTTGAAGGCGGAGCAATTCGACGCCGCGCGCACGAATACGAACTACA
TAACGCGATTCATCAACCTCAAGAAAAAGATCGACGCTTTCATTGTTGCC
ACCAACGACGTGATAGACGATGTTGACAAGCTTGAAACTGCGTTTGAGAT
GGCACAGCTTGAAACTGCGTTTGAGATGGCACAGGAGGTCGAGGCCCTCT
TCACGAACTTTGACTCGTCTGTGTACACGATCATCTTCATCCCTGCCGAC
GCTAGCGGTGTGCTTCCCCCTGGAGCAGAAAAATATCTAAAGCAGGAGGT
CGAGGCCCTCTTCACGAACTTTGACTCGTCTGTGTACACGATCATCTTCA
TCCCTGCCGACGCTAGCGGTGTGCTTCCCCCTGGAGCAGAAAAATATCTA
AAGCAGGCTTACGGGTACTACAACGACATCAACAAGGTCCTGGACTTTTA
CATCAGTCTCGCGCCGACGGAGGTGAAGCAGGCCGCGGAGAAACTCCTGC
CAGCGAAGAAGGCTGCCCTCCCCAAGTTCTTGTTCAAGCAAGACTCCGCC
CTCATGAAGGAACGGGTGTCAGTCAGCGGCTAGGCTTACGGGTACTACAA
CGACATCAACAAGGTCCTGGACTTTTACATCAGTCTCGCGCCGACGGAGG
TGAAGCAGGCCGCGGAGAAACTCCTGCCAGCGAAGAAGGCTGCCCTCCCC
AAGTTCTTGTTCAAGCAAGACTCCGCCCTCATGAAGGAACGGGTGTCAGT
CAGCGGCTAG
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