mRNA_H-elongata_contig133174.2360.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig133174.2360.1 vs. uniprot
Match: A0A6H5JXK5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK5_9PHAE) HSP 1 Score: 160 bits (406), Expect = 4.980e-42 Identity = 80/143 (55.94%), Postives = 104/143 (72.73%), Query Frame = 3
Query: 186 AIAQTYPSSLHKFFLYHIHENIRKHGRGLGEGVLAAVQQKFNAAAYAPTEDMFVQYKAEALRLLTPDSHMDEYMDKNMFDPGRVQKWAAHAQPGLHTLSIASTQRVESTNSALKRVMTRSGNMVDVDNAVVGHVQDGADKTAR 614
AIA YPS+L+K ++H ENIR HGRGL EGVL AV KF AAAYA T++ F+Q + E L +L P+SHM +YM N+F R KWA++ PGLHTL IASTQRVES N+A+K V+TR G+M+D+++ ++ VQDG KT R
Sbjct: 418 AIANVYPSALNKLCIWHTMENIRDHGRGLAEGVLPAVLGKFKAAAYAQTQEYFLQLRGEILDMLPPESHMYKYMAVNIFGAERAGKWASYVHPGLHTLGIASTQRVESMNAAVKAVVTRKGSMMDLNDGIMAKVQDGMAKTER 560
BLAST of mRNA_H-elongata_contig133174.2360.1 vs. uniprot
Match: A0A6H5JIP1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIP1_9PHAE) HSP 1 Score: 150 bits (379), Expect = 9.680e-42 Identity = 72/143 (50.35%), Postives = 99/143 (69.23%), Query Frame = 3
Query: 186 AIAQTYPSSLHKFFLYHIHENIRKHGRGLGEGVLAAVQQKFNAAAYAPTEDMFVQYKAEALRLLTPDSHMDEYMDKNMFDPGRVQKWAAHAQPGLHTLSIASTQRVESTNSALKRVMTRSGNMVDVDNAVVGHVQDGADKTAR 614
AIAQ +P +L+K +H +N+++HG+GL + V+ V +KF AAAYAPT F + K E L +L P+S M +YM ++F PGR +WAA PGLHTL IASTQRVES N A K+++TR+G++ D+D A+VG V DG K R
Sbjct: 27 AIAQVFPGALNKLCYWHTEQNVKEHGKGLPQAVIQGVLRKFKAAAYAPTVGTFFEAKTELLAMLDPESRMYKYMAGDIFSPGRAGRWAAFVHPGLHTLGIASTQRVESMNCAFKKLVTRTGDLFDLDRAIVGKVSDGKIKAER 169
BLAST of mRNA_H-elongata_contig133174.2360.1 vs. uniprot
Match: A0A6H5JZ35_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ35_9PHAE) HSP 1 Score: 151 bits (381), Expect = 2.470e-40 Identity = 72/143 (50.35%), Postives = 101/143 (70.63%), Query Frame = 3
Query: 186 AIAQTYPSSLHKFFLYHIHENIRKHGRGLGEGVLAAVQQKFNAAAYAPTEDMFVQYKAEALRLLTPDSHMDEYMDKNMFDPGRVQKWAAHAQPGLHTLSIASTQRVESTNSALKRVMTRSGNMVDVDNAVVGHVQDGADKTAR 614
AIAQ +P +L+K +H+ +N+++HG+GL EGV+ V +KF AAA+APT V+ K E L +L P+S M++Y ++F PGR +WAA PGLHTL IASTQRVES N A K+++TR+G++ D+D A+VG V DG K R
Sbjct: 263 AIAQVFPGALNKLCYWHMEQNVKEHGKGLPEGVIQGVLRKFKAAAFAPTVGALVEAKTELLAMLDPESTMNKYTAGDIFSPGRAGRWAAFVHPGLHTLGIASTQRVESMNCAFKKLVTRTGDLFDLDRAIVGKVSDGKIKAER 405
BLAST of mRNA_H-elongata_contig133174.2360.1 vs. uniprot
Match: A0A6H5KJW1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW1_9PHAE) HSP 1 Score: 146 bits (369), Expect = 2.380e-39 Identity = 73/126 (57.94%), Postives = 93/126 (73.81%), Query Frame = 3
Query: 186 AIAQTYPSSLHKFFLYHIHENIRKHGRGLGEGVLAAVQQKFNAAAYAPTEDMFVQYKAEALRLLTPDSHMDEYMDKNMFDPGRVQKWAAHAQPGLHTLSIASTQRVESTNSALKRVMTRSGNMVDV 563
AI + P+S K L+H+ EN+ KHG GL +GVLA V+ F+AAAYA TE+MF+++KA + L PDSHM +YM +F+P RVQ+WA+ PGLHTL+I STQRVESTN ALK M RSG+MVDV
Sbjct: 201 AIDEECPASHQKLCLFHMDENLMKHGEGLEQGVLAGVKGMFHAAAYAHTEEMFLKHKANLFKQLKPDSHMYKYMADFVFEPRRVQRWASFVHPGLHTLNIVSTQRVESTNGALKTAMHRSGSMVDV 326
BLAST of mRNA_H-elongata_contig133174.2360.1 vs. uniprot
Match: A0A6H5JB23_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB23_9PHAE) HSP 1 Score: 152 bits (383), Expect = 3.870e-39 Identity = 76/143 (53.15%), Postives = 102/143 (71.33%), Query Frame = 3
Query: 186 AIAQTYPSSLHKFFLYHIHENIRKHGRGLGEGVLAAVQQKFNAAAYAPTEDMFVQYKAEALRLLTPDSHMDEYMDKNMFDPGRVQKWAAHAQPGLHTLSIASTQRVESTNSALKRVMTRSGNMVDVDNAVVGHVQDGADKTAR 614
AI +P ++HK ++H + NIR+HG GLGEGVL+ V +KF AA+A T + F+Q K E L L +S M YM N+F GRV+KWA+ PGLHTL I STQRVE+ NSA+KR++TRSG MV+++ A++G VQD A+KT R
Sbjct: 327 AIELVFPGTVHKLCIWHTYGNIREHGGGLGEGVLSEVIRKFRKAAFAQTVEYFLQAKTELLAFLPRESKMYNYMANNIFGKGRVEKWASCVHPGLHTLGICSTQRVEAMNSAVKRLVTRSGTMVELNRALMGKVQDDANKTKR 469
BLAST of mRNA_H-elongata_contig133174.2360.1 vs. uniprot
Match: A0A6H5JDT4_9PHAE (MULE domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDT4_9PHAE) HSP 1 Score: 149 bits (377), Expect = 3.250e-38 Identity = 71/143 (49.65%), Postives = 103/143 (72.03%), Query Frame = 3
Query: 186 AIAQTYPSSLHKFFLYHIHENIRKHGRGLGEGVLAAVQQKFNAAAYAPTEDMFVQYKAEALRLLTPDSHMDEYMDKNMFDPGRVQKWAAHAQPGLHTLSIASTQRVESTNSALKRVMTRSGNMVDVDNAVVGHVQDGADKTAR 614
AIAQ +P +L+K +H +N++ HG+GL G+L + +KF AAAYAPT + FV+ K E L +L P+S + +YM +F+PGR KWA+ PGLHTL IASTQRVE TN A+K+++TR+G++ D++ A++G VQD A +T R
Sbjct: 203 AIAQVFPGALNKLCYWHKEQNVKAHGKGLPGGILQGILRKFKAAAYAPTLEAFVEIKTELLSMLDPESGVYKYMLGEIFNPGRAGKWASFVHPGLHTLGIASTQRVEGTNCAVKKLVTRTGDLADLERALLGKVQDDAIRTQR 345
BLAST of mRNA_H-elongata_contig133174.2360.1 vs. uniprot
Match: A0A6H5K1S8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S8_9PHAE) HSP 1 Score: 147 bits (370), Expect = 2.150e-37 Identity = 76/140 (54.29%), Postives = 97/140 (69.29%), Query Frame = 3
Query: 189 IAQTYPSSLHKFFLYHIHENIRKHGRGLGEGVLAAVQQKFNAAAYAPTEDMFVQYKAEALRLLTPDSHMDEYMDKNMFDPGRVQKWAAHAQPGLHTLSIASTQRVESTNSALKRVMTRSGNMVDVDNAVVGHVQDGADKT 608
I + P+S K ++H+ EN+RKHG+GLGEGVLAAV F+ AAY+ TE+MF+Q K E +LL P HM Y+ + +F P VQ+WA + PGL TL I+STQRVESTN ALK MTR+G MVDV A+ G V D +KT
Sbjct: 44 IEKESPASRGKVCVFHMDENLRKHGKGLGEGVLAAVIGLFHKAAYSQTEEMFLQRKEELFKLLDPGRHMYTYITECVFSPKWVQRWAKYVHPGLPTLGISSTQRVESTNGALKPAMTRTGTMVDVHRAISGKVSDDVNKT 183
BLAST of mRNA_H-elongata_contig133174.2360.1 vs. uniprot
Match: D7G8C7_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C7_ECTSI) HSP 1 Score: 145 bits (367), Expect = 4.180e-37 Identity = 80/166 (48.19%), Postives = 105/166 (63.25%), Query Frame = 3
Query: 186 AIAQTYPSSLHKFFLYHIHENIRKHGRGLGEGVLAAVQQKFNAAAYAPTEDMFVQYKAEALRLLTPDSHMDEYMDKNMFDPG-----------------------RVQKWAAHAQPGLHTLSIASTQRVESTNSALKRVMTRSGNMVDVDNAVVGHVQDGADKTAR 614
AIA+ YPS+L+K ++H NIR+HG GL +GVL V Q F AAAYA TE+ F+Q K L LL P+S M EYM+KN+F G R KWA++ PGLHTL IASTQRVES N+A+K+++TR G+MVD+ A++G VQD ++T R
Sbjct: 142 AIAKVYPSALNKLCIWHTMGNIREHGGGLEKGVLGQVLQLFKAAAYAQTEEYFLQCKGALLDLLPPESKMYEYMEKNIFGTGFRQLVTSSVSCPLSLSRPVTCDRRAGKWASYVHPGLHTLGIASTQRVESMNAAVKKLVTRKGDMVDLGRALLGKVQDDINRTQR 307
BLAST of mRNA_H-elongata_contig133174.2360.1 vs. uniprot
Match: A0A6H5KQ14_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ14_9PHAE) HSP 1 Score: 144 bits (363), Expect = 6.080e-37 Identity = 73/141 (51.77%), Postives = 101/141 (71.63%), Query Frame = 3
Query: 186 AIAQTYPSSLHKFFLYHIHENIRKHGRGLGEGVLAAVQQKFNAAAYAPTEDMFVQYKAEALRLLTPDSHMDEYMDKNMFDPGRVQKWAAHAQPGLHTLSIASTQRVESTNSALKRVMTRSGNMVDVDNAVVGHVQDGADKT 608
AIA+ +P +L+K +++ +NIRKHG+GL +G L +V Q F AAA+A + FV+YK E RLL +S M +YM+ +F GRV+KWA+ PGLH L IASTQR E+T +ALK V+TR+GNMVD++ A++ VQD A KT
Sbjct: 105 AIAEVFPGALNKLCIWYAMQNIRKHGKGLADGALQSVLQNFKAAAFAARVEDFVRYKTELPRLLPQESAMHKYMEGTIFGAGRVEKWASCVHPGLHKLGIASTQRCEATFTALKLVVTRNGNMVDLNRALLSKVQDDAIKT 245
BLAST of mRNA_H-elongata_contig133174.2360.1 vs. uniprot
Match: A0A6H5LBK2_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBK2_9PHAE) HSP 1 Score: 132 bits (332), Expect = 1.760e-33 Identity = 69/147 (46.94%), Postives = 97/147 (65.99%), Query Frame = 3
Query: 186 AIAQTYPSSLHKFFLYHIHENIRKHGRGLGEGVLAAVQQKFNAAAYAPTEDMF-VQYKAEALRLLTPDSHMDEYMDKNMFDP---GRVQKWAAHAQPGLHTLSIASTQRVESTNSALKRVMTRSGNMVDVDNAVVGHVQDGADKTAR 614
AIAQ +P +L+K +H +N+++HG+GL +GV+ V +KF AAAYAPT + + A L +L P+S M +YM ++F R +WAA PGLHTL IASTQRVES N A K+++TR+G++ D+D A+VG V DG K R
Sbjct: 219 AIAQVFPGALNKLCYWHTEQNVKEHGKGLPQGVIQGVLRKFKAAAYAPTVGVREILLSATPLAMLDPESRMYKYMAGDIFSATHASRAGRWAAFVHPGLHTLGIASTQRVESMNCAFKKLVTRTGDLFDLDRAIVGKVNDGKIKAER 365 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133174.2360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig133174.2360.1 >prot_H-elongata_contig133174.2360.1 ID=prot_H-elongata_contig133174.2360.1|Name=mRNA_H-elongata_contig133174.2360.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp MQALLSHERTENFLFLFEMFTELCAGVHPQVIYTDADQAETSQSPKPTLHback to top mRNA from alignment at H-elongata_contig133174:71..1240+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig133174.2360.1 ID=mRNA_H-elongata_contig133174.2360.1|Name=mRNA_H-elongata_contig133174.2360.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1170bp|location=Sequence derived from alignment at H-elongata_contig133174:71..1240+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig133174:71..1240+ >mRNA_H-elongata_contig133174.2360.1 ID=mRNA_H-elongata_contig133174.2360.1|Name=mRNA_H-elongata_contig133174.2360.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig133174:71..1240+ (Himanthalia elongata Himel1 dioecious)back to top |