mRNA_H-elongata_contig13312.2358.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13312.2358.1
Unique NamemRNA_H-elongata_contig13312.2358.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13312.2358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13312contigH-elongata_contig13312:7056..7925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size248
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929789.795017-CDS-H-elongata_contig13312:7055..72551622929789.795017-CDS-H-elongata_contig13312:7055..7255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13312 7056..7255 +
1691679158.398229-CDS-H-elongata_contig13312:7055..72551691679158.398229-CDS-H-elongata_contig13312:7055..7255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13312 7056..7255 +
1622929789.815341-CDS-H-elongata_contig13312:7879..79251622929789.815341-CDS-H-elongata_contig13312:7879..7925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13312 7880..7925 +
1691679158.4081535-CDS-H-elongata_contig13312:7879..79251691679158.4081535-CDS-H-elongata_contig13312:7879..7925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13312 7880..7925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13312.2358.1prot_H-elongata_contig13312.2358.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13312 7056..7925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13312.2358.1

>prot_H-elongata_contig13312.2358.1 ID=prot_H-elongata_contig13312.2358.1|Name=mRNA_H-elongata_contig13312.2358.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
GGWLRHANGFQALCPHCSAVIPCKTNTTNLFRHLKIKHPEEYKQALNGRK
KEKEVLECATQARLKFTRTNQAKQRILDAVAE
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mRNA from alignment at H-elongata_contig13312:7056..7925+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13312.2358.1 ID=mRNA_H-elongata_contig13312.2358.1|Name=mRNA_H-elongata_contig13312.2358.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=870bp|location=Sequence derived from alignment at H-elongata_contig13312:7056..7925+ (Himanthalia elongata Himel1 dioecious)
GGAGGCTGGCTGCGACACGCAAATGGGTTTCAGGCGCTCTGCCCACACTG
CTCCGCTGTGATCCCGTGCAAGACCAATACCACGAACTTGTTCAGGCACC
TCAAAATCAAGCATCCAGAGGAGTACAAGCAAGCGCTGAATGGGAGGAAG
AAAGAGAAGGAGGTACTGGAGTGTGCTACGCAGGCGCGCCTCAAATTCAC
GTGAGTATGTGTGTGTTATGTTCTATGTGATCTGTGATAGATGATCTTCG
GTACGTAACTTATGAGCTGACTTTACAAAGCCATAAAACATGAGTCGTGA
GTCGTGAGACAAGCAATCAAGAGTCGTGCTCAATTGTACGGTGTACGGTG
TACCGTATACCAACAGGGTGTAAAATCTGCACCACTACTACTGTTGTACG
GTCATTGTGAAGAAGAGACGTACGTGATGTTGCCAGCATGAAAACGGTAT
TTGTATCTGCCACCCGGCACGATCGCGGGGTACTGGAGGGATACAGTTCT
CGCGCGGAGGACAAAATGTAGCAGAAGGCCGAACAGGAGAAGGTCGCTCA
TTACTCATCACCCATTACCTCACGCATGATGGTTCCTGATCTGACTGTGC
GACAGCTTCACGCTGGATATGTTTTACATACTCTCAGTACGCAGTTACTG
TTACTTGTATTCCGTCAGCGTTGGTTATTACTCCATGGAGAAGCATTTGC
GTTCCGGGCTGCCGCGCGGTTGGTTAAACGTGTTCAACCCAAGGTAGATT
GCAAAGCTTGGTCGCACTTCCCTGTGTTCGCAACAGATTCGCTCTTGTCG
ATTGGTGATATGCTCATTATGCAGGCGGACGAATCAAGCTAAGCAGCGGA
TACTGGACGCAGTCGCCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig13312:7056..7925+

>mRNA_H-elongata_contig13312.2358.1 ID=mRNA_H-elongata_contig13312.2358.1|Name=mRNA_H-elongata_contig13312.2358.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig13312:7056..7925+ (Himanthalia elongata Himel1 dioecious)
GGAGGCTGGCTGCGACACGCAAATGGGTTTCAGGCGCTCTGCCCACACTG
CTCCGCTGTGATCCCGTGCAAGACCAATACCACGAACTTGTTCAGGCACC
TCAAAATCAAGCATCCAGAGGAGTACAAGCAAGCGCTGAATGGGAGGAAG
AAAGAGAAGGAGGTACTGGAGTGTGCTACGCAGGCGCGCCTCAAATTCAC
GGAGGCTGGCTGCGACACGCAAATGGGTTTCAGGCGCTCTGCCCACACTG
CTCCGCTGTGATCCCGTGCAAGACCAATACCACGAACTTGTTCAGGCACC
TCAAAATCAAGCATCCAGAGGAGTACAAGCAAGCGCTGAATGGGAGGAAG
AAAGAGAAGGAGGTACTGGAGTGTGCTACGCAGGCGCGCCTCAAATTCAC
GCGGACGAATCAAGCTAAGCAGCGGATACTGGACGCAGTCGCCGAGGCGG
ACGAATCAAGCTAAGCAGCGGATACTGGACGCAGTCGCCGAG
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