mRNA_H-elongata_contig13311.2357.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13311.2357.1
Unique NamemRNA_H-elongata_contig13311.2357.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13311.2357.1 vs. uniprot
Match: D8LGB6_ECTSI (PUM-HD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB6_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 8.660e-25
Identity = 50/55 (90.91%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:    1 MLQDQYANYVIQKTLQLAPRDAALSLVESIREHLGLMRNSSGGRRMLTKIAKRFP 165
            +LQDQYANYVIQKTLQLAPRDAAL+LVESIREHL LMRNSSGGRRMLT+I+KRFP
Sbjct:  119 LLQDQYANYVIQKTLQLAPRDAALTLVESIREHLVLMRNSSGGRRMLTRISKRFP 173
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BLAST of mRNA_H-elongata_contig13311.2357.1 vs. uniprot
Match: A0A6H5K3P5_9PHAE (PUM-HD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3P5_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 6.150e-23
Identity = 50/55 (90.91%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:    1 MLQDQYANYVIQKTLQLAPRDAALSLVESIREHLGLMRNSSGGRRMLTKIAKRFP 165
            +LQDQYANYVIQKTLQLAPRDAAL+LVESIREHL LMRNSSGGRRMLT+I+KRFP
Sbjct:  437 LLQDQYANYVIQKTLQLAPRDAALTLVESIREHLVLMRNSSGGRRMLTRISKRFP 491
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BLAST of mRNA_H-elongata_contig13311.2357.1 vs. uniprot
Match: A0A8K1FD32_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FD32_PYTOL)

HSP 1 Score: 67.0 bits (162), Expect = 7.840e-13
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 MLQDQYANYVIQKTLQLAPRDAALSLVESIREHLGLMRNSSGGRRMLTKIAKRFP 165
            MLQDQ+ANYV+Q+ L +A  D  L+LV++IR HL  M+N+SGGRR+  +I KRFP
Sbjct:    4 MLQDQFANYVVQRALCVASEDQCLALVKAIRPHLVAMKNTSGGRRITARILKRFP 58
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BLAST of mRNA_H-elongata_contig13311.2357.1 vs. uniprot
Match: A0A4D9CTA7_9STRA (PUM-HD domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTA7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.100e-12
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 MLQDQYANYVIQKTLQLAPRDAALSLVESIREHLGLMRNSSGGRRMLTKIAKRFP 165
            ++QDQYANYV+Q+ L +A     L LVE++R HL  MRN++GGRR+L+KI KRFP
Sbjct: 1075 LMQDQYANYVVQRALSVATHSRGLHLVEAVRPHLHAMRNTAGGRRILSKITKRFP 1129
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BLAST of mRNA_H-elongata_contig13311.2357.1 vs. uniprot
Match: A0A3R7AH66_9STRA (PUM-HD domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AH66_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.270e-11
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 MLQDQYANYVIQKTLQLAPRDAALSLVESIREHLGLMRNSSGGRRMLTKIAKRFP 165
            MLQDQYANYV+Q+ L +A  D  L LV +IR HL  M+N+ GGRR+  +I KRFP
Sbjct:  212 MLQDQYANYVVQRALSVASDDNCLDLVSAIRPHLASMKNTQGGRRIQARILKRFP 266
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BLAST of mRNA_H-elongata_contig13311.2357.1 vs. uniprot
Match: A0A8K1C9G3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C9G3_PYTOL)

HSP 1 Score: 67.0 bits (162), Expect = 1.340e-11
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 MLQDQYANYVIQKTLQLAPRDAALSLVESIREHLGLMRNSSGGRRMLTKIAKRFP 165
            MLQDQ+ANYV+Q+ L +A  D  L+LV++IR HL  M+N+SGGRR+  +I KRFP
Sbjct:  845 MLQDQFANYVVQRALCVASEDQCLALVKAIRPHLVAMKNTSGGRRITARILKRFP 899
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BLAST of mRNA_H-elongata_contig13311.2357.1 vs. uniprot
Match: K3W6G7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6G7_GLOUD)

HSP 1 Score: 67.0 bits (162), Expect = 1.340e-11
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 MLQDQYANYVIQKTLQLAPRDAALSLVESIREHLGLMRNSSGGRRMLTKIAKRFP 165
            MLQDQ+ANYV+Q+ L +   +  L LV+SIR HL +M+N+SGGRR+  +I KRFP
Sbjct:  911 MLQDQFANYVVQRALCVCSEEQCLQLVKSIRPHLAMMKNTSGGRRITARILKRFP 965
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BLAST of mRNA_H-elongata_contig13311.2357.1 vs. uniprot
Match: A0A397DCS3_9STRA (PUM-HD domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DCS3_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.860e-11
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 MLQDQYANYVIQKTLQLAPRDAALSLVESIREHLGLMRNSSGGRRMLTKIAKRFP 165
            MLQDQYANYV+Q+ L +A  D  L LV +IR HL  M+N+ GGRR+  +I KRFP
Sbjct:  223 MLQDQYANYVVQRALSVASDDNCLDLVAAIRPHLASMKNTQGGRRIQARILKRFP 277
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BLAST of mRNA_H-elongata_contig13311.2357.1 vs. uniprot
Match: A0A7S2XV53_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV53_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.170e-11
Identity = 30/55 (54.55%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 MLQDQYANYVIQKTLQLAPRDAALSLVESIREHLGLMRNSSGGRRMLTKIAKRFP 165
            +L DQ+ANYV+Q++L +AP   A  LV++I+ HL  +RN+SGGRR++ KI KRFP
Sbjct:  215 LLNDQFANYVVQRSLVVAPHAVATELVDNIKPHLPQLRNTSGGRRIIAKILKRFP 269
[Close]
BLAST of mRNA_H-elongata_contig13311.2357.1 vs. uniprot
Match: A0A397BU93_9STRA (PUM-HD domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BU93_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.430e-11
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 MLQDQYANYVIQKTLQLAPRDAALSLVESIREHLGLMRNSSGGRRMLTKIAKRFP 165
            MLQDQYANYV+Q+ L +A  D  L LV +IR HL  M+N+ GGRR+  +I KRFP
Sbjct:  329 MLQDQYANYVVQRALSVASDDNCLDLVAAIRPHLASMKNTQGGRRIQARILKRFP 383
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13311.2357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGB6_ECTSI8.660e-2590.91PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5K3P5_9PHAE6.150e-2390.91PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A8K1FD32_PYTOL7.840e-1358.18Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A4D9CTA7_9STRA1.100e-1258.18PUM-HD domain-containing protein n=2 Tax=Monodopsi... [more]
A0A3R7AH66_9STRA1.270e-1158.18PUM-HD domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A8K1C9G3_PYTOL1.340e-1158.18Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3W6G7_GLOUD1.340e-1156.36Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A397DCS3_9STRA1.860e-1158.18PUM-HD domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A7S2XV53_9STRA2.170e-1154.55Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A397BU93_9STRA2.430e-1158.18PUM-HD domain-containing protein n=6 Tax=Aphanomyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13311contigH-elongata_contig13311:7773..7937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue4.3e-19
Seed eggNOG ortholog2880.D8LGB6
EggNOG free text desc.regulation of translation
EggNOG OGsCOG5099@1,KOG2049@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929789.7431238-CDS-H-elongata_contig13311:7772..79371622929789.7431238-CDS-H-elongata_contig13311:7772..7937Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13311 7773..7937 -
1691679158.3763695-CDS-H-elongata_contig13311:7772..79371691679158.3763695-CDS-H-elongata_contig13311:7772..7937Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13311 7773..7937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13311.2357.1prot_H-elongata_contig13311.2357.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13311 7773..7937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13311.2357.1

>prot_H-elongata_contig13311.2357.1 ID=prot_H-elongata_contig13311.2357.1|Name=mRNA_H-elongata_contig13311.2357.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
MLQDQYANYVIQKTLQLAPRDAALSLVESIREHLGLMRNSSGGRRMLTKI
AKRFP
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mRNA from alignment at H-elongata_contig13311:7773..7937-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13311.2357.1 ID=mRNA_H-elongata_contig13311.2357.1|Name=mRNA_H-elongata_contig13311.2357.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig13311:7773..7937- (Himanthalia elongata Himel1 dioecious)
ATGTTGCAGGACCAGTACGCGAACTATGTGATCCAGAAGACCCTCCAGCT
GGCCCCCCGGGACGCCGCTCTATCGCTCGTGGAGAGCATCCGTGAGCACC
TGGGCCTCATGAGGAACTCCTCGGGCGGGCGCCGCATGCTCACGAAGATC
GCCAAGCGTTTCCCC
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Coding sequence (CDS) from alignment at H-elongata_contig13311:7773..7937-

>mRNA_H-elongata_contig13311.2357.1 ID=mRNA_H-elongata_contig13311.2357.1|Name=mRNA_H-elongata_contig13311.2357.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig13311:7773..7937- (Himanthalia elongata Himel1 dioecious)
ATGTTGCAGGACCAGTACGCGAACTATGTGATCCAGAAGACCCTCCAGCT
GGCCCCCCGGGACGCCGCTCTATCGCTCGTGGAGAGCATCCGTGAGCACC
TGGGCCTCATGAGGAACTCCTCGGGCGGGCGCCGCATGCTCACGAAGATC
GCCAAGCGTTTCCCCATGTTGCAGGACCAGTACGCGAACTATGTGATCCA
GAAGACCCTCCAGCTGGCCCCCCGGGACGCCGCTCTATCGCTCGTGGAGA
GCATCCGTGAGCACCTGGGCCTCATGAGGAACTCCTCGGGCGGGCGCCGC
ATGCTCACGAAGATCGCCAAGCGTTTCCCC
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