mRNA_H-elongata_contig133045.2354.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133045.2354.1
Unique NamemRNA_H-elongata_contig133045.2354.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig133045.2354.1 vs. uniprot
Match: D8LFD1_ECTSI (PfkB-type carbohydrate kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFD1_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.380e-33
Identity = 64/68 (94.12%), Postives = 65/68 (95.59%), Query Frame = 1
Query:    1 ASRLGLDACLATKVGSDANGGLILQGLEREGVDVSRVIVSDATPSAFTYVIVDRAGGTRTCLHTPQTE 204
            ASRLGLDACLATKVGSDANG LILQGLE EGVDVSRVIVSDATPSAFTYVIVD+ GGTRTCLHTPQTE
Sbjct:  141 ASRLGLDACLATKVGSDANGRLILQGLEEEGVDVSRVIVSDATPSAFTYVIVDKEGGTRTCLHTPQTE 208          
BLAST of mRNA_H-elongata_contig133045.2354.1 vs. uniprot
Match: A0A7R9YT32_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YT32_9CHLO)

HSP 1 Score: 80.1 bits (196), Expect = 4.700e-16
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 1
Query:    1 ASRLGLDACLATKVGSDANGGLILQGLEREGVDVSRVIVSDATPSAFTYVIVDRAGGTRTCLHTP 195
            ASRLGL   L TK+G+D  G  IL+ LE +G+D S V+ ++ +PS FTY+IVDR GGTRTC+HTP
Sbjct:   42 ASRLGLSPVLVTKIGADGVGDTILRELESDGIDTSCVLRAEGSPSPFTYIIVDRDGGTRTCIHTP 106          
BLAST of mRNA_H-elongata_contig133045.2354.1 vs. uniprot
Match: A0A8J4F1B2_9CHLO (PfkB domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F1B2_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 6.100e-15
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 ASRLGLDACLATKVGSDANGGLILQGLEREGVDVSRVIVSDATPSAFTYVIVDRAGGTRTCLHTP 195
            A+RLGL   L TK+G+D  G  I+  L R+G+D + V+ +   PS FTY+IVDR GGTRTC+HTP
Sbjct:   30 AARLGLAPTLVTKIGADGLGDGIISELHRDGIDTTHVLRAKGHPSPFTYIIVDRQGGTRTCIHTP 94          
BLAST of mRNA_H-elongata_contig133045.2354.1 vs. uniprot
Match: D8UHL3_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UHL3_VOLCA)

HSP 1 Score: 76.3 bits (186), Expect = 1.160e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 ASRLGLDACLATKVGSDANGGLILQGLEREGVDVSRVIVSDATPSAFTYVIVDRAGGTRTCLHTP 195
            A+RLGL   L TK+GSD  G  I+  L R+G+D + V+ ++  PS FTY+IVDR GGTRTC+HTP
Sbjct:   96 AARLGLSPSLVTKIGSDGLGDGIISELLRDGIDTTHVLRAEGHPSPFTYIIVDRQGGTRTCIHTP 160          
BLAST of mRNA_H-elongata_contig133045.2354.1 vs. uniprot
Match: A0A0D2NSM7_9CHLO (Carbohydrate/purine kinase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2NSM7_9CHLO)

HSP 1 Score: 74.7 bits (182), Expect = 4.260e-14
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    4 SRLGLDACLATKVGSDANGGLILQGLEREGVDVSRVIVSDATPSAFTYVIVDRAGGTRTCLHTP 195
            +RLGL   + TK+G D  G  I+  LE +GVD S V+ +  +PS FTY+IVDR+GGTRTC+HTP
Sbjct:   76 ARLGLSPTIITKIGGDGLGDGIISELEADGVDTSLVLRAKGSPSPFTYIIVDRSGGTRTCIHTP 139          
BLAST of mRNA_H-elongata_contig133045.2354.1 vs. uniprot
Match: A0A150GZA1_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GZA1_GONPE)

HSP 1 Score: 74.7 bits (182), Expect = 4.270e-14
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    1 ASRLGLDACLATKVGSDANGGLILQGLEREGVDVSRVIVSDATPSAFTYVIVDRAGGTRTCLHTP 195
            A+RLGL A L TK+G D  G  +L  L  +G+D S V+ +   PS FTY+IVDR GGTRTC+HTP
Sbjct:   64 AARLGLSASLVTKIGGDGLGDGMLSELRADGIDTSAVLRAAGHPSPFTYIIVDRTGGTRTCIHTP 128          
BLAST of mRNA_H-elongata_contig133045.2354.1 vs. uniprot
Match: A0A8J9RCI6_9CHLO (Probable ribokinase at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RCI6_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 5.680e-14
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 ASRLGLDACLATKVGSDANGGLILQGLEREGVDVSRVIVSDATPSAFTYVIVDRAGGTRTCLHTP 195
            ASRLGL   L TK+G DA G  I++ LE +GV+   V+ +  +PS FTY+IVDR GGTRTC+HTP
Sbjct:   56 ASRLGLRPLLITKIGDDAVGDGIVKELENDGVNTDFVLRAKGSPSPFTYIIVDREGGTRTCIHTP 120          
BLAST of mRNA_H-elongata_contig133045.2354.1 vs. uniprot
Match: A0A8J4F2Z2_9CHLO (Uncharacterized protein n=3 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F2Z2_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 6.070e-14
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 ASRLGLDACLATKVGSDANGGLILQGLEREGVDVSRVIVSDATPSAFTYVIVDRAGGTRTCLHTP 195
            A+RLGL   L TK+G+D  G  I+  L R+G+D + V+ +   PS FTY+IVDR GGTRTC+HTP
Sbjct:  119 AARLGLAPTLVTKIGADGLGDGIISELHRDGIDTTHVLRAKGHPSPFTYIIVDRQGGTRTCIHTP 183          
BLAST of mRNA_H-elongata_contig133045.2354.1 vs. uniprot
Match: A0A8J4CMF9_9CHLO (Uncharacterized protein n=3 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CMF9_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 6.070e-14
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 ASRLGLDACLATKVGSDANGGLILQGLEREGVDVSRVIVSDATPSAFTYVIVDRAGGTRTCLHTP 195
            A+RLGL   + TK+G D  G  I+  L R+G+D + V+ ++  PS FTY+IVDR GGTRTC+HTP
Sbjct:  118 AARLGLAPTIVTKIGGDGLGDGIISELHRDGIDTAHVLRAEGHPSPFTYIIVDRQGGTRTCIHTP 182          
BLAST of mRNA_H-elongata_contig133045.2354.1 vs. uniprot
Match: A0A835YF39_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YF39_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 1.990e-13
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    1 ASRLGLDACLATKVGSDANGGLILQGLEREGVDVSRVIVSDATPSAFTYVIVDRAGGTRTCLHTP 195
            A+RLGL   L TK+G D  G  IL  L  +G+D   V+ +   PS FTY+IVDR GGTRTC+HTP
Sbjct:   42 AARLGLSPALVTKIGGDGLGDGILTELHADGIDTQHVLRAPGHPSPFTYIIVDRQGGTRTCIHTP 106          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133045.2354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFD1_ECTSI1.380e-3394.12PfkB-type carbohydrate kinase n=1 Tax=Ectocarpus s... [more]
A0A7R9YT32_9CHLO4.700e-1658.46Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A8J4F1B2_9CHLO6.100e-1553.85PfkB domain-containing protein n=1 Tax=Volvox afri... [more]
D8UHL3_VOLCA1.160e-1455.38Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A0D2NSM7_9CHLO4.260e-1454.69Carbohydrate/purine kinase n=1 Tax=Monoraphidium n... [more]
A0A150GZA1_GONPE4.270e-1455.38Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A8J9RCI6_9CHLO5.680e-1456.92Probable ribokinase at N-terminal half n=1 Tax=Coc... [more]
A0A8J4F2Z2_9CHLO6.070e-1453.85Uncharacterized protein n=3 Tax=Volvox africanus T... [more]
A0A8J4CMF9_9CHLO6.070e-1452.31Uncharacterized protein n=3 Tax=Volvox reticulifer... [more]
A0A835YF39_9CHLO1.990e-1353.85Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133045contigH-elongata_contig133045:1457..1660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.7
Seed ortholog evalue4.1e-27
Seed eggNOG ortholog2880.D8LFD1
EggNOG free text desc.Belongs to the carbohydrate kinase PfkB family
EggNOG OGsKOG2947@1,KOG2947@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929789.4755936-CDS-H-elongata_contig133045:1456..16601622929789.4755936-CDS-H-elongata_contig133045:1456..1660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133045 1457..1660 +
1691679158.2739015-CDS-H-elongata_contig133045:1456..16601691679158.2739015-CDS-H-elongata_contig133045:1456..1660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133045 1457..1660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133045.2354.1prot_H-elongata_contig133045.2354.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133045 1457..1660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133045.2354.1

>prot_H-elongata_contig133045.2354.1 ID=prot_H-elongata_contig133045.2354.1|Name=mRNA_H-elongata_contig133045.2354.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
ASRLGLDACLATKVGSDANGGLILQGLEREGVDVSRVIVSDATPSAFTYV
IVDRAGGTRTCLHTPQTE
back to top

mRNA from alignment at H-elongata_contig133045:1457..1660+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133045.2354.1 ID=mRNA_H-elongata_contig133045.2354.1|Name=mRNA_H-elongata_contig133045.2354.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig133045:1457..1660+ (Himanthalia elongata Himel1 dioecious)
GCGAGTCGACTTGGACTGGACGCTTGCTTGGCGACGAAAGTGGGCTCTGA CGCCAACGGGGGGCTGATCCTACAGGGGCTAGAGAGGGAAGGGGTGGATG TTTCCCGGGTAATCGTCAGCGACGCGACTCCTTCCGCTTTCACTTACGTC ATCGTCGACAGAGCCGGGGGCACCAGGACATGCCTGCATACTCCACAGAC GGAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig133045:1457..1660+

>mRNA_H-elongata_contig133045.2354.1 ID=mRNA_H-elongata_contig133045.2354.1|Name=mRNA_H-elongata_contig133045.2354.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig133045:1457..1660+ (Himanthalia elongata Himel1 dioecious)
GCGAGTCGACTTGGACTGGACGCTTGCTTGGCGACGAAAGTGGGCTCTGA
CGCCAACGGGGGGCTGATCCTACAGGGGCTAGAGAGGGAAGGGGTGGATG
TTTCCCGGGTAATCGTCAGCGACGCGACTCCTTCCGCTTTCACTTACGTC
ATCGTCGACAGAGCCGGGGGCACCAGGACATGCCTGCATACTCCACAGAC
GGAAGCGAGTCGACTTGGACTGGACGCTTGCTTGGCGACGAAAGTGGGCT
CTGACGCCAACGGGGGGCTGATCCTACAGGGGCTAGAGAGGGAAGGGGTG
GATGTTTCCCGGGTAATCGTCAGCGACGCGACTCCTTCCGCTTTCACTTA
CGTCATCGTCGACAGAGCCGGGGGCACCAGGACATGCCTGCATACTCCAC
AGACGGAA
back to top