mRNA_H-elongata_contig132935.2347.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132935.2347.1
Unique NamemRNA_H-elongata_contig132935.2347.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132935.2347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132935contigH-elongata_contig132935:789..1462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size674
Cds size624
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929788.9462185-UTR-H-elongata_contig132935:788..8381622929788.9462185-UTR-H-elongata_contig132935:788..838Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132935 789..838 +
1691679158.0601993-UTR-H-elongata_contig132935:788..8381691679158.0601993-UTR-H-elongata_contig132935:788..838Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132935 789..838 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929788.9683878-CDS-H-elongata_contig132935:838..14621622929788.9683878-CDS-H-elongata_contig132935:838..1462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132935 839..1462 +
1691679158.0709167-CDS-H-elongata_contig132935:838..14621691679158.0709167-CDS-H-elongata_contig132935:838..1462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132935 839..1462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132935.2347.1prot_H-elongata_contig132935.2347.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132935 839..1462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132935.2347.1

>prot_H-elongata_contig132935.2347.1 ID=prot_H-elongata_contig132935.2347.1|Name=mRNA_H-elongata_contig132935.2347.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=208bp
MMRPKDGCSKQPTYEVAGSTNRSHCAKHALEGIANVEKKISAGCGCSKGS
SYGKGGSTNLQYCAEHALYGMVNVVSKVCTGNGCYNAATNGVTSNGRREF
CSEHTLEGMVNVSKKICSNFGCSKFRSHGKVDSTKREYCAEHALEEKVNV
SKKTCAGGGCSKLPYYSKAGSTNREYCSEHALEGKVNVSNYRCAADGCSK
IPRYGKAG
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mRNA from alignment at H-elongata_contig132935:789..1462+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132935.2347.1 ID=mRNA_H-elongata_contig132935.2347.1|Name=mRNA_H-elongata_contig132935.2347.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=674bp|location=Sequence derived from alignment at H-elongata_contig132935:789..1462+ (Himanthalia elongata Himel1 dioecious)
GCGAGTGCTGCGCCGAGTATTTCGTGGAGAAAAATAGTTGAGTTGCAAAT
ATGATGCGTCCGAAAGATGGATGCTCTAAGCAACCGACCTACGAGGTGGC
TGGCAGCACGAACCGGAGTCACTGCGCCAAGCATGCCCTGGAGGGTATTG
CCAACGTTGAGAAAAAAATATCTGCTGGTTGTGGATGCTCGAAGGGATCG
AGCTACGGGAAGGGCGGAAGCACAAATCTCCAGTACTGCGCCGAGCATGC
TTTGTATGGGATGGTCAACGTTGTTTCCAAGGTATGTACCGGTAATGGGT
GTTATAATGCAGCGACAAACGGTGTGACCAGCAACGGAAGGCGAGAATTC
TGCTCCGAGCATACCCTAGAGGGGATGGTCAACGTTTCGAAGAAAATTTG
TTCCAACTTTGGGTGCTCTAAGTTCCGAAGCCACGGGAAGGTTGACAGCA
CAAAACGGGAGTATTGTGCTGAGCATGCCTTGGAGGAAAAGGTCAATGTT
TCAAAGAAAACGTGTGCTGGTGGTGGTTGCTCTAAGCTACCATATTACAG
TAAGGCTGGCAGCACGAATCGAGAGTACTGCTCTGAGCATGCCTTGGAGG
GGAAGGTCAATGTTTCGAACTACAGATGTGCCGCTGATGGATGTTCTAAG
ATTCCGAGGTACGGGAAGGCCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig132935:789..1462+

>mRNA_H-elongata_contig132935.2347.1 ID=mRNA_H-elongata_contig132935.2347.1|Name=mRNA_H-elongata_contig132935.2347.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1248bp|location=Sequence derived from alignment at H-elongata_contig132935:789..1462+ (Himanthalia elongata Himel1 dioecious)
ATGATGCGTCCGAAAGATGGATGCTCTAAGCAACCGACCTACGAGGTGGC
TGGCAGCACGAACCGGAGTCACTGCGCCAAGCATGCCCTGGAGGGTATTG
CCAACGTTGAGAAAAAAATATCTGCTGGTTGTGGATGCTCGAAGGGATCG
AGCTACGGGAAGGGCGGAAGCACAAATCTCCAGTACTGCGCCGAGCATGC
TTTGTATGGGATGGTCAACGTTGTTTCCAAGGTATGTACCGGTAATGGGT
GTTATAATGCAGCGACAAACGGTGTGACCAGCAACGGAAGGCGAGAATTC
TGCTCCGAGCATACCCTAGAGGGGATGGTCAACGTTTCGAAGAAAATTTG
TTCCAACTTTGGGTGCTCTAAGTTCCGAAGCCACGGGAAGGTTGACAGCA
CAAAACGGGAGTATTGTGCTGAGCATGCCTTGGAGGAAAAGGTCAATGTT
TCAAAGAAAACGTGTGCTGGTGGTGGTTGCTCTAAGCTACCATATTACAG
TAAGGCTGGCAGCACGAATCGAGAGTACTGCTCTGAGCATGCCTTGGAGG
GGAAGGTCAATGTTTCGAACTACAGATGTGCCGCTGATGGATGTTCTAAG
ATTCCGAGGTACGGGAAGGCCGGGATGATGCGTCCGAAAGATGGATGCTC
TAAGCAACCGACCTACGAGGTGGCTGGCAGCACGAACCGGAGTCACTGCG
CCAAGCATGCCCTGGAGGGTATTGCCAACGTTGAGAAAAAAATATCTGCT
GGTTGTGGATGCTCGAAGGGATCGAGCTACGGGAAGGGCGGAAGCACAAA
TCTCCAGTACTGCGCCGAGCATGCTTTGTATGGGATGGTCAACGTTGTTT
CCAAGGTATGTACCGGTAATGGGTGTTATAATGCAGCGACAAACGGTGTG
ACCAGCAACGGAAGGCGAGAATTCTGCTCCGAGCATACCCTAGAGGGGAT
GGTCAACGTTTCGAAGAAAATTTGTTCCAACTTTGGGTGCTCTAAGTTCC
GAAGCCACGGGAAGGTTGACAGCACAAAACGGGAGTATTGTGCTGAGCAT
GCCTTGGAGGAAAAGGTCAATGTTTCAAAGAAAACGTGTGCTGGTGGTGG
TTGCTCTAAGCTACCATATTACAGTAAGGCTGGCAGCACGAATCGAGAGT
ACTGCTCTGAGCATGCCTTGGAGGGGAAGGTCAATGTTTCGAACTACAGA
TGTGCCGCTGATGGATGTTCTAAGATTCCGAGGTACGGGAAGGCCGGG
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