mRNA_H-elongata_contig132780.2344.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132780.2344.1
Unique NamemRNA_H-elongata_contig132780.2344.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132780.2344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132780contigH-elongata_contig132780:962..1492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size532
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929788.7029083-CDS-H-elongata_contig132780:961..12821622929788.7029083-CDS-H-elongata_contig132780:961..1282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132780 962..1282 +
1691679158.0073988-CDS-H-elongata_contig132780:961..12821691679158.0073988-CDS-H-elongata_contig132780:961..1282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132780 962..1282 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929788.7234395-UTR-H-elongata_contig132780:1282..14921622929788.7234395-UTR-H-elongata_contig132780:1282..1492Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132780 1283..1492 +
1691679158.0187454-UTR-H-elongata_contig132780:1282..14921691679158.0187454-UTR-H-elongata_contig132780:1282..1492Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132780 1283..1492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132780.2344.1prot_H-elongata_contig132780.2344.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132780 962..1282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132780.2344.1

>prot_H-elongata_contig132780.2344.1 ID=prot_H-elongata_contig132780.2344.1|Name=mRNA_H-elongata_contig132780.2344.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
STSSARTAATDPLSQERVTRIPKPKRKLASTGRPRSILPECPPTSCSHFV
SRPAIAPPAWRPAAAAPTSTCRFSGSGPRPRGITAKGHSVRRGRSGANGH
GAKSDA*
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mRNA from alignment at H-elongata_contig132780:962..1492+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132780.2344.1 ID=mRNA_H-elongata_contig132780.2344.1|Name=mRNA_H-elongata_contig132780.2344.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=531bp|location=Sequence derived from alignment at H-elongata_contig132780:962..1492+ (Himanthalia elongata Himel1 dioecious)
TCTACTTCTAGTGCCCGTACAGCCGCGACCGACCCTCTCAGCCAAGAGCG
CGTCACCCGCATCCCAAAACCCAAGAGGAAGCTGGCCAGCACCGGTCGAC
CCCGATCGATCCTCCCCGAATGCCCTCCGACCTCTTGCTCGCATTTCGTG
TCCCGACCTGCGATTGCCCCCCCCGCCTGGCGTCCCGCCGCAGCCGCCCC
TACTTCGACGTGTAGGTTTTCTGGGTCCGGACCTCGACCGCGCGGAATTA
CGGCCAAGGGACATAGCGTGCGCCGAGGTCGTTCGGGCGCGAATGGTCAC
GGAGCTAAGTCTGACGCTTGAGCATGCGATAGATCGAGCAGATAAGGTCG
CGGTTCTGCCCAATGCACCGCGAGAGACCAGTAGCATTATAATAATCAGC
CTCCGCACGACCGAATACTGATCGTCGCAAGGAGAAGAACGAGCTCTGTT
CATCGTTTGTAACCTTGCGTATTTTTTTCACGTGCCAATGATGATCAAGG
GTCTGATATACAGGTTCGCTGCTGAGGCCCT
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Coding sequence (CDS) from alignment at H-elongata_contig132780:962..1492+

>mRNA_H-elongata_contig132780.2344.1 ID=mRNA_H-elongata_contig132780.2344.1|Name=mRNA_H-elongata_contig132780.2344.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig132780:962..1492+ (Himanthalia elongata Himel1 dioecious)
TCTACTTCTAGTGCCCGTACAGCCGCGACCGACCCTCTCAGCCAAGAGCG
CGTCACCCGCATCCCAAAACCCAAGAGGAAGCTGGCCAGCACCGGTCGAC
CCCGATCGATCCTCCCCGAATGCCCTCCGACCTCTTGCTCGCATTTCGTG
TCCCGACCTGCGATTGCCCCCCCCGCCTGGCGTCCCGCCGCAGCCGCCCC
TACTTCGACGTGTAGGTTTTCTGGGTCCGGACCTCGACCGCGCGGAATTA
CGGCCAAGGGACATAGCGTGCGCCGAGGTCGTTCGGGCGCGAATGGTCAC
GGAGCTAAGTCTGACGCTTGATCTACTTCTAGTGCCCGTACAGCCGCGAC
CGACCCTCTCAGCCAAGAGCGCGTCACCCGCATCCCAAAACCCAAGAGGA
AGCTGGCCAGCACCGGTCGACCCCGATCGATCCTCCCCGAATGCCCTCCG
ACCTCTTGCTCGCATTTCGTGTCCCGACCTGCGATTGCCCCCCCCGCCTG
GCGTCCCGCCGCAGCCGCCCCTACTTCGACGTGTAGGTTTTCTGGGTCCG
GACCTCGACCGCGCGGAATTACGGCCAAGGGACATAGCGTGCGCCGAGGT
CGTTCGGGCGCGAATGGTCACGGAGCTAAGTCTGACGCTTGA
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