mRNA_H-elongata_contig132731.2340.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132731.2340.1
Unique NamemRNA_H-elongata_contig132731.2340.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig132731.2340.1 vs. uniprot
Match: A0A6H5J671_9PHAE (Adenylosuccinate lyase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J671_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 2.910e-37
Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:    1 QAMPIIHLGATSCFVGDNADIIQIRDALLLLRRKLVKLLAVMKTFASEYRALPTLGFTHYQPAQLTTVGKRAILWMQ 231
            +AMPIIHLGATSCFVGDN DI+QIRDALLLLRRKLVK L VMK FA+E+RALPTLGFTHYQPAQLTTVGKRA LWMQ
Sbjct:  183 KAMPIIHLGATSCFVGDNTDIVQIRDALLLLRRKLVKFLGVMKAFAAEHRALPTLGFTHYQPAQLTTVGKRATLWMQ 259
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BLAST of mRNA_H-elongata_contig132731.2340.1 vs. uniprot
Match: B7FS29_PHATC (Adenylosuccinate lyase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FS29_PHATC)

HSP 1 Score: 131 bits (329), Expect = 3.850e-34
Identity = 61/77 (79.22%), Postives = 70/77 (90.91%), Query Frame = 1 
Query:    1 QAMPIIHLGATSCFVGDNADIIQIRDALLLLRRKLVKLLAVMKTFASEYRALPTLGFTHYQPAQLTTVGKRAILWMQ 231
            +AMP+IHLGATSC+VGDN DI+QIRDAL L++RKLVK+LA +KTFA +YR LPTLGFTHYQPAQLTTVGKR  LWMQ
Sbjct:  114 KAMPVIHLGATSCYVGDNTDIVQIRDALKLVQRKLVKVLATLKTFAEKYRDLPTLGFTHYQPAQLTTVGKRCTLWMQ 190
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BLAST of mRNA_H-elongata_contig132731.2340.1 vs. uniprot
Match: A0A835YZX3_9STRA (Adenylosuccinate lyase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZX3_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.880e-33
Identity = 62/77 (80.52%), Postives = 69/77 (89.61%), Query Frame = 1 
Query:    1 QAMPIIHLGATSCFVGDNADIIQIRDALLLLRRKLVKLLAVMKTFASEYRALPTLGFTHYQPAQLTTVGKRAILWMQ 231
            +AMPIIHLGATSC+VGDN DI+QIRDALLL+RRKLVKLLAVM  FA +++ L TLGFTHYQPAQLTTVGKR  LWMQ
Sbjct:  108 KAMPIIHLGATSCYVGDNTDIVQIRDALLLVRRKLVKLLAVMAAFADKHKELATLGFTHYQPAQLTTVGKRCTLWMQ 184
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BLAST of mRNA_H-elongata_contig132731.2340.1 vs. uniprot
Match: A0A7S1TUH3_9STRA (Adenylosuccinate lyase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUH3_9STRA)

HSP 1 Score: 128 bits (322), Expect = 3.400e-33
Identity = 60/77 (77.92%), Postives = 69/77 (89.61%), Query Frame = 1 
Query:    1 QAMPIIHLGATSCFVGDNADIIQIRDALLLLRRKLVKLLAVMKTFASEYRALPTLGFTHYQPAQLTTVGKRAILWMQ 231
             AMPIIH GATSCFVGDN D+IQ+R+AL+LLRRKLV+LL VM+TFA +Y+ +PTLGFTHYQPAQLTTVGKR  LWMQ
Sbjct:  102 SAMPIIHAGATSCFVGDNTDLIQMREALMLLRRKLVQLLDVMRTFARQYKDMPTLGFTHYQPAQLTTVGKRCCLWMQ 178
[Close]
BLAST of mRNA_H-elongata_contig132731.2340.1 vs. uniprot
Match: A0A7S2UPT1_9STRA (Adenylosuccinate lyase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UPT1_9STRA)

HSP 1 Score: 127 bits (320), Expect = 6.720e-33
Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:    4 AMPIIHLGATSCFVGDNADIIQIRDALLLLRRKLVKLLAVMKTFASEYRALPTLGFTHYQPAQLTTVGKRAILWMQ 231
            AMPIIHLGATSC+VGDN D+IQIRDAL L++RKLVK + ++K FA +YR LPTLGFTHYQPAQLTTVGKRA LWMQ
Sbjct:  105 AMPIIHLGATSCYVGDNTDLIQIRDALKLIQRKLVKAIGILKKFAVQYRDLPTLGFTHYQPAQLTTVGKRATLWMQ 180
[Close]
BLAST of mRNA_H-elongata_contig132731.2340.1 vs. uniprot
Match: A0A7S0C5S7_9STRA (Adenylosuccinate lyase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C5S7_9STRA)

HSP 1 Score: 127 bits (319), Expect = 6.810e-33
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 1 
Query:    4 AMPIIHLGATSCFVGDNADIIQIRDALLLLRRKLVKLLAVMKTFASEYRALPTLGFTHYQPAQLTTVGKRAILWMQ 231
            AMPIIHLGATSC+VGDN D+IQIRDAL LL+RKLV +L VMK FA +YR +PTLGFTHYQPAQLTTVGKR  LWMQ
Sbjct:   77 AMPIIHLGATSCYVGDNTDLIQIRDALELLKRKLVNVLNVMKNFAEKYRDMPTLGFTHYQPAQLTTVGKRCTLWMQ 152
[Close]
BLAST of mRNA_H-elongata_contig132731.2340.1 vs. uniprot
Match: A0A7S2WP13_9STRA (Adenylosuccinate lyase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WP13_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.120e-32
Identity = 60/77 (77.92%), Postives = 69/77 (89.61%), Query Frame = 1 
Query:    1 QAMPIIHLGATSCFVGDNADIIQIRDALLLLRRKLVKLLAVMKTFASEYRALPTLGFTHYQPAQLTTVGKRAILWMQ 231
             AMPIIHLGATSC+VGDN DIIQ+R+++ LLRRKLVKLLAVMK FA E++ +PTLGFTHYQPAQLTT+GKR  LWMQ
Sbjct:  122 SAMPIIHLGATSCYVGDNTDIIQLRESMQLLRRKLVKLLAVMKGFALEHKDVPTLGFTHYQPAQLTTIGKRCTLWMQ 198
[Close]
BLAST of mRNA_H-elongata_contig132731.2340.1 vs. uniprot
Match: A0A7S3LFQ6_9STRA (Adenylosuccinate lyase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LFQ6_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.420e-32
Identity = 58/77 (75.32%), Postives = 70/77 (90.91%), Query Frame = 1 
Query:    1 QAMPIIHLGATSCFVGDNADIIQIRDALLLLRRKLVKLLAVMKTFASEYRALPTLGFTHYQPAQLTTVGKRAILWMQ 231
            +AMP+IHLGATSC+VGDN D++QIR+AL L++RKLVK+LA +K FA +YR LPTLGFTHYQPAQLTTVGKR+ LWMQ
Sbjct:  113 KAMPVIHLGATSCYVGDNTDLVQIREALKLIKRKLVKVLATLKEFAVKYRDLPTLGFTHYQPAQLTTVGKRSTLWMQ 189
[Close]
BLAST of mRNA_H-elongata_contig132731.2340.1 vs. uniprot
Match: A0A7S2VE40_9STRA (Adenylosuccinate lyase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VE40_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.870e-32
Identity = 57/76 (75.00%), Postives = 69/76 (90.79%), Query Frame = 1 
Query:    4 AMPIIHLGATSCFVGDNADIIQIRDALLLLRRKLVKLLAVMKTFASEYRALPTLGFTHYQPAQLTTVGKRAILWMQ 231
            AMP+IHLGATSC+VGDN D++QIRDAL L++RKLVK+LA +K FA +++ LPTLGFTHYQPAQLTTVGKR+ LWMQ
Sbjct:  114 AMPVIHLGATSCYVGDNTDLVQIRDALKLVKRKLVKVLATLKEFAMKHKDLPTLGFTHYQPAQLTTVGKRSTLWMQ 189
[Close]
BLAST of mRNA_H-elongata_contig132731.2340.1 vs. uniprot
Match: A0A7S2EK02_TRICV (Adenylosuccinate lyase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EK02_TRICV)

HSP 1 Score: 125 bits (314), Expect = 5.340e-32
Identity = 56/76 (73.68%), Postives = 70/76 (92.11%), Query Frame = 1 
Query:    4 AMPIIHLGATSCFVGDNADIIQIRDALLLLRRKLVKLLAVMKTFASEYRALPTLGFTHYQPAQLTTVGKRAILWMQ 231
            AMPIIHLGATSC+VGDN D++QIR+AL+L++RKLVK ++++K FA ++R +PTLGFTHYQPAQLTTVGKRA LWMQ
Sbjct:  115 AMPIIHLGATSCYVGDNTDLVQIREALMLVKRKLVKTISILKAFAEKHRDVPTLGFTHYQPAQLTTVGKRATLWMQ 190
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132731.2340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J671_9PHAE2.910e-3788.31Adenylosuccinate lyase n=2 Tax=Ectocarpus TaxID=28... [more]
B7FS29_PHATC3.850e-3479.22Adenylosuccinate lyase n=2 Tax=Phaeodactylum trico... [more]
A0A835YZX3_9STRA1.880e-3380.52Adenylosuccinate lyase n=1 Tax=Tribonema minus Tax... [more]
A0A7S1TUH3_9STRA3.400e-3377.92Adenylosuccinate lyase n=1 Tax=Phaeomonas parva Ta... [more]
A0A7S2UPT1_9STRA6.720e-3378.95Adenylosuccinate lyase n=1 Tax=Attheya septentrion... [more]
A0A7S0C5S7_9STRA6.810e-3380.26Adenylosuccinate lyase n=1 Tax=Proboscia inermis T... [more]
A0A7S2WP13_9STRA1.120e-3277.92Adenylosuccinate lyase n=1 Tax=Rhizochromulina mar... [more]
A0A7S3LFQ6_9STRA1.420e-3275.32Adenylosuccinate lyase n=1 Tax=Amphora coffeiformi... [more]
A0A7S2VE40_9STRA1.870e-3275.00Adenylosuccinate lyase (Fragment) n=1 Tax=Amphipro... [more]
A0A7S2EK02_TRICV5.340e-3273.68Adenylosuccinate lyase n=1 Tax=Trieres chinensis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132731contigH-elongata_contig132731:1192..1461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.7
Seed ortholog evalue1.3e-30
Seed eggNOG ortholog2880.D8LG38
Preferred nameADSL
KEGG rclassRC00379,RC00444,RC00445
KEGG koko:K01756
KEGG ReactionR01083,R04559
KEGG Pathwayko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130
KEGG ModuleM00048,M00049
GOsGO:0003674,GO:0003824,GO:0004018,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006106,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007584,GO:0008150,GO:0008152,GO:0009058,GO:0009060,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009605,GO:0009987,GO:0009991,GO:0015980,GO:0016043,GO:0016829,GO:0016840,GO:0016842,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0022607,GO:0031667,GO:0034641,GO:0034654,GO:0042221,GO:0043436,GO:0043648,GO:0043933,GO:0044085,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0050896,GO:0051259,GO:0051262,GO:0055086,GO:0055114,GO:0065003,GO:0070626,GO:0071704,GO:0071840,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity
EggNOG OGsCOG0015@1,KOG2700@2759
EC4.3.2.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAdenylosuccinate lyase
Ec32 orthologEc-11_002070.1
Exons1
Model size270
Cds size264
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929788.317195-CDS-H-elongata_contig132731:1191..14551622929788.317195-CDS-H-elongata_contig132731:1191..1455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132731 1192..1455 -
1691679157.840831-CDS-H-elongata_contig132731:1191..14551691679157.840831-CDS-H-elongata_contig132731:1191..1455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132731 1192..1455 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929788.333618-UTR-H-elongata_contig132731:1455..14611622929788.333618-UTR-H-elongata_contig132731:1455..1461Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132731 1456..1461 -
1691679157.8554-UTR-H-elongata_contig132731:1455..14611691679157.8554-UTR-H-elongata_contig132731:1455..1461Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132731 1456..1461 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132731.2340.1prot_H-elongata_contig132731.2340.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132731 1192..1455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132731.2340.1

>prot_H-elongata_contig132731.2340.1 ID=prot_H-elongata_contig132731.2340.1|Name=mRNA_H-elongata_contig132731.2340.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MPIIHLGATSCFVGDNADIIQIRDALLLLRRKLVKLLAVMKTFASEYRAL
PTLGFTHYQPAQLTTVGKRAILWMQVGLSFFFALTFE*
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mRNA from alignment at H-elongata_contig132731:1192..1461-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132731.2340.1 ID=mRNA_H-elongata_contig132731.2340.1|Name=mRNA_H-elongata_contig132731.2340.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=270bp|location=Sequence derived from alignment at H-elongata_contig132731:1192..1461- (Himanthalia elongata Himel1 dioecious)
CAGGCCATGCCGATCATCCACCTCGGAGCAACGTCGTGCTTCGTCGGAGA
CAACGCGGACATAATCCAGATCCGCGACGCCCTCCTGCTGCTGCGCCGGA
AGCTCGTGAAACTCCTCGCGGTGATGAAGACCTTCGCATCCGAGTACCGT
GCCCTGCCTACCCTAGGCTTCACGCACTACCAGCCCGCGCAGCTCACCAC
AGTGGGCAAGCGCGCCATCCTCTGGATGCAGGTTGGCTTGTCGTTTTTCT
TTGCTCTTACGTTCGAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig132731:1192..1461-

>mRNA_H-elongata_contig132731.2340.1 ID=mRNA_H-elongata_contig132731.2340.1|Name=mRNA_H-elongata_contig132731.2340.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig132731:1192..1461- (Himanthalia elongata Himel1 dioecious)
ATGCCGATCATCCACCTCGGAGCAACGTCGTGCTTCGTCGGAGACAACGC
GGACATAATCCAGATCCGCGACGCCCTCCTGCTGCTGCGCCGGAAGCTCG
TGAAACTCCTCGCGGTGATGAAGACCTTCGCATCCGAGTACCGTGCCCTG
CCTACCCTAGGCTTCACGCACTACCAGCCCGCGCAGCTCACCACAGTGGG
CAAGCGCGCCATCCTCTGGATGCAGGTTGGCTTGTCGTTTTTCTTTGCTC
TTACGTTCGAATAAATGCCGATCATCCACCTCGGAGCAACGTCGTGCTTC
GTCGGAGACAACGCGGACATAATCCAGATCCGCGACGCCCTCCTGCTGCT
GCGCCGGAAGCTCGTGAAACTCCTCGCGGTGATGAAGACCTTCGCATCCG
AGTACCGTGCCCTGCCTACCCTAGGCTTCACGCACTACCAGCCCGCGCAG
CTCACCACAGTGGGCAAGCGCGCCATCCTCTGGATGCAGGTTGGCTTGTC
GTTTTTCTTTGCTCTTACGTTCGAATAA
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