mRNA_H-elongata_contig132711.2337.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig132711.2337.1 vs. uniprot
Match: D7G358_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G358_ECTSI) HSP 1 Score: 142 bits (359), Expect = 6.290e-40 Identity = 70/79 (88.61%), Postives = 72/79 (91.14%), Query Frame = 2
Query: 2 PQDLFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKKKYSLKEYLCVGLITTGIVIFNLS-KEH 235
P LFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKK+YSL+EYLCV LIT GIV FNLS K H
Sbjct: 92 PHHLFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKKQYSLQEYLCVALITVGIVTFNLSGKPH 170
BLAST of mRNA_H-elongata_contig132711.2337.1 vs. uniprot
Match: D7G364_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G364_ECTSI) HSP 1 Score: 134 bits (337), Expect = 1.580e-36 Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 2
Query: 2 PQDLFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKKKYSLKEYLCVGLITTGIVIFNLSKE 232
PQ LFG G AYIGAM+ SIEAL+YVNFPTKELGKSCKMIPVMLFGVLFAKK+YS++EYLCV LITTGIVIFNL++
Sbjct: 74 PQQLFGLTGSAYIGAMILSIEALQYVNFPTKELGKSCKMIPVMLFGVLFAKKQYSVREYLCVALITTGIVIFNLAER 150
BLAST of mRNA_H-elongata_contig132711.2337.1 vs. uniprot
Match: A0A835ZCP5_9STRA (UAA transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCP5_9STRA) HSP 1 Score: 117 bits (292), Expect = 7.810e-30 Identity = 52/78 (66.67%), Postives = 64/78 (82.05%), Query Frame = 2
Query: 2 PQDLFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKKKYSLKEYLCVGLITTGIVIFNLSKEH 235
P LF AG YI AM+CS+E+L Y+NFPTKELGKSCKMIPVMLFGV+FA K+YS+++Y+ V LIT GIV FNL+ +H
Sbjct: 105 PHKLFSMAGAGYISAMICSLESLNYINFPTKELGKSCKMIPVMLFGVVFAGKRYSVRDYVGVALITAGIVTFNLAGKH 182
BLAST of mRNA_H-elongata_contig132711.2337.1 vs. uniprot
Match: A0A6V2XTI4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2XTI4_HETAK) HSP 1 Score: 112 bits (279), Expect = 9.470e-28 Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 2
Query: 2 PQDLFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKKKYSLKEYLCVGLITTGIVIFNLSKE 232
PQ++F G YIGAM+ S E+LK+VN+PT+ LGKSCKMIPVMLFGVLFA KKYS+KEYLCV LIT GI +F +S +
Sbjct: 121 PQNMFAAVGATYIGAMLTSNESLKHVNYPTQALGKSCKMIPVMLFGVLFAGKKYSMKEYLCVLLITAGIAMFQMSGK 197
BLAST of mRNA_H-elongata_contig132711.2337.1 vs. uniprot
Match: T0RGF4_SAPDV (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0RGF4_SAPDV) HSP 1 Score: 109 bits (272), Expect = 4.240e-27 Identity = 51/76 (67.11%), Postives = 61/76 (80.26%), Query Frame = 2
Query: 2 PQDLFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKKKYSLKEYLCVGLITTGIVIFNLSK 229
P F + FAY+GAM+CS EALK+V++PT+ LGKSCKMIPVML GVL +KKY+LKEYL VGLIT GIV+F L K
Sbjct: 85 PLQPFAFSAFAYLGAMLCSNEALKHVSYPTQALGKSCKMIPVMLMGVLIGRKKYALKEYLSVGLITLGIVVFQLGK 160
BLAST of mRNA_H-elongata_contig132711.2337.1 vs. uniprot
Match: A0A3R6XUE9_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XUE9_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.060e-26 Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 2
Query: 2 PQDLFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKKKYSLKEYLCVGLITTGIVIFNLSKE 232
P F + F+Y+GAM+CS EALKYVN+PT+ LGKSCKMIPVML GV+ +KKYS KEY+ V LIT GIVIF L K+
Sbjct: 23 PLSPFAFSAFSYLGAMLCSNEALKYVNYPTQALGKSCKMIPVMLMGVVLGRKKYSWKEYVSVILITAGIVIFQLGKD 99
BLAST of mRNA_H-elongata_contig132711.2337.1 vs. uniprot
Match: A0A6A4ZTG8_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZTG8_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.110e-26 Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 2
Query: 2 PQDLFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKKKYSLKEYLCVGLITTGIVIFNLSKE 232
P F + F+Y+GAM+CS EALKYVN+PT+ LGKSCKMIPVML GV+ +KKYS KEY+ V LIT GIVIF L K+
Sbjct: 93 PLSPFAFSAFSYLGAMLCSNEALKYVNYPTQALGKSCKMIPVMLMGVVLGRKKYSWKEYVSVILITAGIVIFQLGKD 169
BLAST of mRNA_H-elongata_contig132711.2337.1 vs. uniprot
Match: A0A024UTX6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UTX6_9STRA) HSP 1 Score: 107 bits (266), Expect = 3.430e-26 Identity = 51/77 (66.23%), Postives = 60/77 (77.92%), Query Frame = 2
Query: 2 PQDLFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKKKYSLKEYLCVGLITTGIVIFNLSKE 232
P F + F+Y+GAM+CS EALKYVN+PT+ LGKSCKMIPVML GVL +KKYS KEY+ V LIT GIVIF L K+
Sbjct: 83 PLSPFAFSAFSYLGAMLCSNEALKYVNYPTQALGKSCKMIPVMLTGVLLGRKKYSWKEYVSVILITAGIVIFQLGKD 159
BLAST of mRNA_H-elongata_contig132711.2337.1 vs. uniprot
Match: W4GLJ2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GLJ2_9STRA) HSP 1 Score: 106 bits (264), Expect = 7.380e-26 Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 2
Query: 2 PQDLFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKKKYSLKEYLCVGLITTGIVIFNLSKE 232
P F + F+Y+GAM+CS EALKYVN+PT+ LGKSCKMIPVML GV+ +KKYS KEY+ V LIT GIVIF L K+
Sbjct: 84 PLGPFAFSAFSYLGAMLCSNEALKYVNYPTQALGKSCKMIPVMLMGVVLGRKKYSWKEYVSVILITAGIVIFQLGKD 160
BLAST of mRNA_H-elongata_contig132711.2337.1 vs. uniprot
Match: A0A485LFH9_9STRA (Aste57867_20361 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LFH9_9STRA) HSP 1 Score: 105 bits (263), Expect = 9.420e-26 Identity = 50/77 (64.94%), Postives = 59/77 (76.62%), Query Frame = 2
Query: 2 PQDLFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKKKYSLKEYLCVGLITTGIVIFNLSKE 232
P F F+Y+GAM+CS EALKYVN+PT+ LGKSCKMIPVML GV+ +KKYS KEY+ V LIT GIV+F L KE
Sbjct: 83 PLSPFAFPAFSYLGAMLCSNEALKYVNYPTQALGKSCKMIPVMLTGVVLGRKKYSWKEYVSVILITAGIVVFQLGKE 159 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132711.2337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig132711.2337.1 >prot_H-elongata_contig132711.2337.1 ID=prot_H-elongata_contig132711.2337.1|Name=mRNA_H-elongata_contig132711.2337.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp TPGPLRDRGVRLHRSHGVLHRGPQVCQLSYQRAGEVLQDDPGDAVWSSLRback to top mRNA from alignment at H-elongata_contig132711:1121..1620+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig132711.2337.1 ID=mRNA_H-elongata_contig132711.2337.1|Name=mRNA_H-elongata_contig132711.2337.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=500bp|location=Sequence derived from alignment at H-elongata_contig132711:1121..1620+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig132711:1121..1620+ >mRNA_H-elongata_contig132711.2337.1 ID=mRNA_H-elongata_contig132711.2337.1|Name=mRNA_H-elongata_contig132711.2337.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig132711:1121..1620+ (Himanthalia elongata Himel1 dioecious)back to top |