mRNA_H-elongata_contig132711.2337.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132711.2337.1
Unique NamemRNA_H-elongata_contig132711.2337.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig132711.2337.1 vs. uniprot
Match: D7G358_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G358_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 6.290e-40
Identity = 70/79 (88.61%), Postives = 72/79 (91.14%), Query Frame = 2
Query:    2 PQDLFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKKKYSLKEYLCVGLITTGIVIFNLS-KEH 235
            P  LFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKK+YSL+EYLCV LIT GIV FNLS K H
Sbjct:   92 PHHLFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKKQYSLQEYLCVALITVGIVTFNLSGKPH 170          
BLAST of mRNA_H-elongata_contig132711.2337.1 vs. uniprot
Match: D7G364_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G364_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 1.580e-36
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 2
Query:    2 PQDLFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKKKYSLKEYLCVGLITTGIVIFNLSKE 232
            PQ LFG  G AYIGAM+ SIEAL+YVNFPTKELGKSCKMIPVMLFGVLFAKK+YS++EYLCV LITTGIVIFNL++ 
Sbjct:   74 PQQLFGLTGSAYIGAMILSIEALQYVNFPTKELGKSCKMIPVMLFGVLFAKKQYSVREYLCVALITTGIVIFNLAER 150          
BLAST of mRNA_H-elongata_contig132711.2337.1 vs. uniprot
Match: A0A835ZCP5_9STRA (UAA transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCP5_9STRA)

HSP 1 Score: 117 bits (292), Expect = 7.810e-30
Identity = 52/78 (66.67%), Postives = 64/78 (82.05%), Query Frame = 2
Query:    2 PQDLFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKKKYSLKEYLCVGLITTGIVIFNLSKEH 235
            P  LF  AG  YI AM+CS+E+L Y+NFPTKELGKSCKMIPVMLFGV+FA K+YS+++Y+ V LIT GIV FNL+ +H
Sbjct:  105 PHKLFSMAGAGYISAMICSLESLNYINFPTKELGKSCKMIPVMLFGVVFAGKRYSVRDYVGVALITAGIVTFNLAGKH 182          
BLAST of mRNA_H-elongata_contig132711.2337.1 vs. uniprot
Match: A0A6V2XTI4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2XTI4_HETAK)

HSP 1 Score: 112 bits (279), Expect = 9.470e-28
Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 2
Query:    2 PQDLFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKKKYSLKEYLCVGLITTGIVIFNLSKE 232
            PQ++F   G  YIGAM+ S E+LK+VN+PT+ LGKSCKMIPVMLFGVLFA KKYS+KEYLCV LIT GI +F +S +
Sbjct:  121 PQNMFAAVGATYIGAMLTSNESLKHVNYPTQALGKSCKMIPVMLFGVLFAGKKYSMKEYLCVLLITAGIAMFQMSGK 197          
BLAST of mRNA_H-elongata_contig132711.2337.1 vs. uniprot
Match: T0RGF4_SAPDV (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0RGF4_SAPDV)

HSP 1 Score: 109 bits (272), Expect = 4.240e-27
Identity = 51/76 (67.11%), Postives = 61/76 (80.26%), Query Frame = 2
Query:    2 PQDLFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKKKYSLKEYLCVGLITTGIVIFNLSK 229
            P   F  + FAY+GAM+CS EALK+V++PT+ LGKSCKMIPVML GVL  +KKY+LKEYL VGLIT GIV+F L K
Sbjct:   85 PLQPFAFSAFAYLGAMLCSNEALKHVSYPTQALGKSCKMIPVMLMGVLIGRKKYALKEYLSVGLITLGIVVFQLGK 160          
BLAST of mRNA_H-elongata_contig132711.2337.1 vs. uniprot
Match: A0A3R6XUE9_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XUE9_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.060e-26
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 2
Query:    2 PQDLFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKKKYSLKEYLCVGLITTGIVIFNLSKE 232
            P   F  + F+Y+GAM+CS EALKYVN+PT+ LGKSCKMIPVML GV+  +KKYS KEY+ V LIT GIVIF L K+
Sbjct:   23 PLSPFAFSAFSYLGAMLCSNEALKYVNYPTQALGKSCKMIPVMLMGVVLGRKKYSWKEYVSVILITAGIVIFQLGKD 99          
BLAST of mRNA_H-elongata_contig132711.2337.1 vs. uniprot
Match: A0A6A4ZTG8_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZTG8_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.110e-26
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 2
Query:    2 PQDLFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKKKYSLKEYLCVGLITTGIVIFNLSKE 232
            P   F  + F+Y+GAM+CS EALKYVN+PT+ LGKSCKMIPVML GV+  +KKYS KEY+ V LIT GIVIF L K+
Sbjct:   93 PLSPFAFSAFSYLGAMLCSNEALKYVNYPTQALGKSCKMIPVMLMGVVLGRKKYSWKEYVSVILITAGIVIFQLGKD 169          
BLAST of mRNA_H-elongata_contig132711.2337.1 vs. uniprot
Match: A0A024UTX6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UTX6_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.430e-26
Identity = 51/77 (66.23%), Postives = 60/77 (77.92%), Query Frame = 2
Query:    2 PQDLFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKKKYSLKEYLCVGLITTGIVIFNLSKE 232
            P   F  + F+Y+GAM+CS EALKYVN+PT+ LGKSCKMIPVML GVL  +KKYS KEY+ V LIT GIVIF L K+
Sbjct:   83 PLSPFAFSAFSYLGAMLCSNEALKYVNYPTQALGKSCKMIPVMLTGVLLGRKKYSWKEYVSVILITAGIVIFQLGKD 159          
BLAST of mRNA_H-elongata_contig132711.2337.1 vs. uniprot
Match: W4GLJ2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GLJ2_9STRA)

HSP 1 Score: 106 bits (264), Expect = 7.380e-26
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 2
Query:    2 PQDLFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKKKYSLKEYLCVGLITTGIVIFNLSKE 232
            P   F  + F+Y+GAM+CS EALKYVN+PT+ LGKSCKMIPVML GV+  +KKYS KEY+ V LIT GIVIF L K+
Sbjct:   84 PLGPFAFSAFSYLGAMLCSNEALKYVNYPTQALGKSCKMIPVMLMGVVLGRKKYSWKEYVSVILITAGIVIFQLGKD 160          
BLAST of mRNA_H-elongata_contig132711.2337.1 vs. uniprot
Match: A0A485LFH9_9STRA (Aste57867_20361 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LFH9_9STRA)

HSP 1 Score: 105 bits (263), Expect = 9.420e-26
Identity = 50/77 (64.94%), Postives = 59/77 (76.62%), Query Frame = 2
Query:    2 PQDLFGTAGFAYIGAMVCSIEALKYVNFPTKELGKSCKMIPVMLFGVLFAKKKYSLKEYLCVGLITTGIVIFNLSKE 232
            P   F    F+Y+GAM+CS EALKYVN+PT+ LGKSCKMIPVML GV+  +KKYS KEY+ V LIT GIV+F L KE
Sbjct:   83 PLSPFAFPAFSYLGAMLCSNEALKYVNYPTQALGKSCKMIPVMLTGVVLGRKKYSWKEYVSVILITAGIVVFQLGKE 159          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132711.2337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G358_ECTSI6.290e-4088.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G364_ECTSI1.580e-3681.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZCP5_9STRA7.810e-3066.67UAA transporter n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A6V2XTI4_HETAK9.470e-2867.53Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
T0RGF4_SAPDV4.240e-2767.11Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A3R6XUE9_9STRA1.060e-2664.94Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A6A4ZTG8_9STRA1.110e-2664.94Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A024UTX6_9STRA3.430e-2666.23Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
W4GLJ2_9STRA7.380e-2664.94Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A485LFH9_9STRA9.420e-2664.94Aste57867_20361 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132711contigH-elongata_contig132711:1121..1620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size239
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929788.07988-CDS-H-elongata_contig132711:1120..12351622929788.07988-CDS-H-elongata_contig132711:1120..1235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132711 1121..1235 +
1691679157.7617593-CDS-H-elongata_contig132711:1120..12351691679157.7617593-CDS-H-elongata_contig132711:1120..1235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132711 1121..1235 +
1622929788.0979953-CDS-H-elongata_contig132711:1498..16201622929788.0979953-CDS-H-elongata_contig132711:1498..1620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132711 1499..1620 +
1691679157.769482-CDS-H-elongata_contig132711:1498..16201691679157.769482-CDS-H-elongata_contig132711:1498..1620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132711 1499..1620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132711.2337.1prot_H-elongata_contig132711.2337.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132711 1121..1620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132711.2337.1

>prot_H-elongata_contig132711.2337.1 ID=prot_H-elongata_contig132711.2337.1|Name=mRNA_H-elongata_contig132711.2337.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
TPGPLRDRGVRLHRSHGVLHRGPQVCQLSYQRAGEVLQDDPGDAVWSSLR
EEEVLSQGVFVRGAHHNGHRDLQPLQGA*
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mRNA from alignment at H-elongata_contig132711:1121..1620+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132711.2337.1 ID=mRNA_H-elongata_contig132711.2337.1|Name=mRNA_H-elongata_contig132711.2337.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=500bp|location=Sequence derived from alignment at H-elongata_contig132711:1121..1620+ (Himanthalia elongata Himel1 dioecious)
ACCCCAGGACCTCTTCGGGACCGCGGGGTTCGCCTACATCGGAGCCATGG TGTGCTCCATCGAGGCCCTCAAGTATGTCAACTTTCCTACCAAAGAGCTG GGGAAGTCCTGCAAGGTACGAATAGGGTAAAGATCTTGGGAAGCGAAGGA CATTCTTTATGACACGACGGCTTTTGTTGCTTTCTTGTAAGACAGCTTTT GTTGCTTTCTTGTAAATAATCTATAGTAAATAGTATATACTCTATAGTCT CTATAAATATACTGGATGTATGCATCATGCTATCTATCGCCTTAGAGCCA TTTTCATTTGAACCCGTCCGTCCGTCCGTCCCCCGTCCCCCGTCCCCCTC GGATGCATCGTCGGCGACGAGCGCTCAGATGATCCCGGTGATGCTGTTTG GAGTTCTCTTCGCGAAGAAGAAGTACTCTCTCAAGGAGTATTTGTGCGTG GGGCTCATCACAACGGGCATCGTGATCTTCAACCTCTCCAAGGAGCATAA
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Coding sequence (CDS) from alignment at H-elongata_contig132711:1121..1620+

>mRNA_H-elongata_contig132711.2337.1 ID=mRNA_H-elongata_contig132711.2337.1|Name=mRNA_H-elongata_contig132711.2337.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig132711:1121..1620+ (Himanthalia elongata Himel1 dioecious)
ACCCCAGGACCTCTTCGGGACCGCGGGGTTCGCCTACATCGGAGCCATGG
TGTGCTCCATCGAGGCCCTCAAGTATGTCAACTTTCCTACCAAAGAGCTG
GGGAAGTCCTGCAAGACCCCAGGACCTCTTCGGGACCGCGGGGTTCGCCT
ACATCGGAGCCATGGTGTGCTCCATCGAGGCCCTCAAGTATGTCAACTTT
CCTACCAAAGAGCTGGGGAAGTCCTGCAAGATGATCCCGGTGATGCTGTT
TGGAGTTCTCTTCGCGAAGAAGAAGTACTCTCTCAAGGAGTATTTGTGCG
TGGGGCTCATCACAACGGGCATCGTGATCTTCAACCTCTCCAAGGAGCAT
AAATGATCCCGGTGATGCTGTTTGGAGTTCTCTTCGCGAAGAAGAAGTAC
TCTCTCAAGGAGTATTTGTGCGTGGGGCTCATCACAACGGGCATCGTGAT
CTTCAACCTCTCCAAGGAGCATAA
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