mRNA_H-elongata_contig132636.2334.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132636.2334.1
Unique NamemRNA_H-elongata_contig132636.2334.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig132636.2334.1 vs. uniprot
Match: D7FNY3_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY3_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 9.410e-64
Identity = 104/121 (85.95%), Postives = 110/121 (90.91%), Query Frame = 1 
Query:    1 LTSNDVWAMCQTYGVEAARASIVAEIAGVFGVYGISVDPRHLGLVADHMTFYGGYRAMNRIGMADFSSPCQQMSFETTTAFLTKAAVAGHSDKLKSPSARIVMGRVGTFGTGMFDLRQPAE 363
            LTSND+WA+CQTYGVEAARASIVAEI GVFG YGI+VDPRHLGLVADHMTF GGYR +NR GMADFSSPC QMSFETTT F+ KAAVA  SD+LKSPSARIVMGRVG FGTGMFDLRQPAE
Sbjct:  520 LTSNDIWAVCQTYGVEAARASIVAEITGVFGAYGIAVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGNFGTGMFDLRQPAE 640
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BLAST of mRNA_H-elongata_contig132636.2334.1 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 1.290e-61
Identity = 103/121 (85.12%), Postives = 111/121 (91.74%), Query Frame = 1 
Query:    1 LTSNDVWAMCQTYGVEAARASIVAEIAGVFGVYGISVDPRHLGLVADHMTFYGGYRAMNRIGMADFSSPCQQMSFETTTAFLTKAAVAGHSDKLKSPSARIVMGRVGTFGTGMFDLRQPAE 363
            LTSND+WA+CQTYGVEAARASIV+EI GVFG YGI+VDPRHLGLVADHMTF GGYR +NR GMADFSSPC QMSFETTT F+ KAAVA  SD+LKSPSARIVMGRVG+FGTGMFDLRQPAE
Sbjct: 1749 LTSNDIWAVCQTYGVEAARASIVSEITGVFGAYGIAVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGSFGTGMFDLRQPAE 1869
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BLAST of mRNA_H-elongata_contig132636.2334.1 vs. uniprot
Match: A0A836C8M0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M0_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.010e-45
Identity = 82/122 (67.21%), Postives = 95/122 (77.87%), Query Frame = 1 
Query:    1 LTSNDVWAMCQTYGVEAARASIVAEIAGVFGVYGISVDPRHLGLVADHMTFYGGYRAMNRIGMADFSSPCQQMSFETTTAFLTKAAVAGHSDKLKSPSARIVMGRVGTFGTGMFDLRQPAEI 366
            L SN ++ M  +YGVEA RA+I  EIA VF VYGI VD RHLGL+AD+MTFYGGYRAMNRIGM D +SP  QMSFETT +FL +AA+    +KLKSPSARIVMG+VG FGTG FDL  P E+
Sbjct: 1540 LASNHIYGMLMSYGVEACRAAITKEIAAVFAVYGIGVDARHLGLIADYMTFYGGYRAMNRIGMKDIASPFLQMSFETTASFLVQAALDSKVEKLKSPSARIVMGQVGDFGTGQFDLMVPVEV 1661
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BLAST of mRNA_H-elongata_contig132636.2334.1 vs. uniprot
Match: W7TZA0_9STRA (DNA-directed RNA polymerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZA0_9STRA)

HSP 1 Score: 164 bits (414), Expect = 2.220e-44
Identity = 79/122 (64.75%), Postives = 98/122 (80.33%), Query Frame = 1 
Query:    1 LTSNDVWAMCQTYGVEAARASIVAEIAGVFGVYGISVDPRHLGLVADHMTFYGGYRAMNRIGMADFSSPCQQMSFETTTAFLTKAAVAGHSDKLKSPSARIVMGRVGTFGTGMFDLRQPAEI 366
            +TSND+WAM QTYGVEAARA+IV EI GVFG YGI+VDPRHLGLVAD MT+ GG+RA+NRIGM++ SSP  QMSFETT  FLT+AA+    D L++PSA++VMG+    GTG FD+  P ++
Sbjct: 1138 ITSNDIWAMHQTYGVEAARATIVKEIKGVFGAYGIAVDPRHLGLVADFMTYQGGFRALNRIGMSEVSSPFLQMSFETTATFLTEAALNSEKDDLQTPSAKLVMGQPTGNGTGSFDIMIPVDM 1259
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BLAST of mRNA_H-elongata_contig132636.2334.1 vs. uniprot
Match: K8YRY5_NANGC (DNA-directed RNA polymerase subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRY5_NANGC)

HSP 1 Score: 164 bits (414), Expect = 2.260e-44
Identity = 79/122 (64.75%), Postives = 98/122 (80.33%), Query Frame = 1 
Query:    1 LTSNDVWAMCQTYGVEAARASIVAEIAGVFGVYGISVDPRHLGLVADHMTFYGGYRAMNRIGMADFSSPCQQMSFETTTAFLTKAAVAGHSDKLKSPSARIVMGRVGTFGTGMFDLRQPAEI 366
            +TSND+WAM QTYGVEAARA+IV EI GVFG YGI+VDPRHLGLVAD MT+ GG+RA+NRIGM++ SSP  QMSFETT  FLT+AA+    D L++PSA++VMG+    GTG FD+  P ++
Sbjct: 1728 ITSNDIWAMHQTYGVEAARATIVKEIKGVFGAYGIAVDPRHLGLVADFMTYQGGFRALNRIGMSEVSSPFLQMSFETTATFLTEAALNSEKDDLQTPSAKLVMGQPTGNGTGSFDIMIPVDM 1849
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BLAST of mRNA_H-elongata_contig132636.2334.1 vs. uniprot
Match: A0A7R9ZT77_9STRA (DNA-directed RNA polymerase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZT77_9STRA)

HSP 1 Score: 150 bits (378), Expect = 3.680e-44
Identity = 76/116 (65.52%), Postives = 88/116 (75.86%), Query Frame = 1 
Query:    1 LTSNDVWAMCQTYGVEAARASIVAEIAGVFGVYGISVDPRHLGLVADHMTFYGGYRAMNRIGMADFSSPCQQMSFETTTAFLTKAAVAGHSDKLKSPSARIVMGRVGTFGTGMFDL 348
            L SNDVWA+   YGVEAAR +IV ++  VFG YGI VDPRHL L+AD+MT+ GGY AMNRIGM D SSP  QMSFETT  FLT+AA++G  D+LKSPSA IV+GR    GTG F L
Sbjct:   29 LMSNDVWAVRTAYGVEAARNNIVDQVRSVFGAYGIEVDPRHLTLIADYMTYSGGYTAMNRIGMKDTSSPFLQMSFETTATFLTQAALSGTCDQLKSPSANIVVGRPIRHGTGAFSL 144
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BLAST of mRNA_H-elongata_contig132636.2334.1 vs. uniprot
Match: A0A7S2G4R6_9STRA (DNA-directed RNA polymerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4R6_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.980e-43
Identity = 76/117 (64.96%), Postives = 92/117 (78.63%), Query Frame = 1 
Query:    1 LTSNDVWAMCQTYGVEAARASIVAEIAGVFGVYGISVDPRHLGLVADHMTFYGGYRAMNRIGMAD-FSSPCQQMSFETTTAFLTKAAVAGHSDKLKSPSARIVMGRVGTFGTGMFDL 348
            L +ND++A   TYGVEAAR +IVAE+ GVF VYGIS+D RHL L+AD MTF GGYRA NR+G+A+  SSP  QMSFETT  FLT+AAV G  D+L+SPSARIVMG++   GTG F+L
Sbjct:   66 LVANDIYATLMTYGVEAARGAIVAEVRGVFDVYGISIDARHLSLIADTMTFSGGYRAFNRLGIAEGSSSPYLQMSFETTATFLTEAAVRGDPDRLQSPSARIVMGQLAKQGTGAFEL 182
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BLAST of mRNA_H-elongata_contig132636.2334.1 vs. uniprot
Match: A0A7S1GNJ0_CYCTE (DNA-directed RNA polymerase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GNJ0_CYCTE)

HSP 1 Score: 145 bits (367), Expect = 2.210e-42
Identity = 73/121 (60.33%), Postives = 89/121 (73.55%), Query Frame = 1 
Query:    1 LTSNDVWAMCQTYGVEAARASIVAEIAGVFGVYGISVDPRHLGLVADHMTFYGGYRAMNRIGMADFSSPCQQMSFETTTAFLTKAAVAGHSDKLKSPSARIVMGRVGTFGTGMFDLRQPAE 363
            L SND+WA+   YGVEAAR +IV +I  VFG YGISVDPRHL L+AD+MTF GG++AMNR GM D SSP  QMSFETT  F+T+AA+   ++ L+SPSA IV+GR    GTG FD+   A 
Sbjct:   35 LASNDIWAVRCAYGVEAARNNIVEQIRSVFGAYGISVDPRHLSLIADYMTFDGGFKAMNRNGMNDISSPFLQMSFETTANFMTEAAMKASTEPLRSPSANIVVGRPVRHGTGSFDVLSTAS 155
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BLAST of mRNA_H-elongata_contig132636.2334.1 vs. uniprot
Match: A0A7S0PVI6_9STRA (DNA-directed RNA polymerase n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PVI6_9STRA)

HSP 1 Score: 147 bits (372), Expect = 5.820e-42
Identity = 73/116 (62.93%), Postives = 88/116 (75.86%), Query Frame = 1 
Query:    1 LTSNDVWAMCQTYGVEAARASIVAEIAGVFGVYGISVDPRHLGLVADHMTFYGGYRAMNRIGMADFSSPCQQMSFETTTAFLTKAAVAGHSDKLKSPSARIVMGRVGTFGTGMFDL 348
            L SND+WA+ Q YGVEAAR +IV +I  VFG YGI VDPRHL L+AD+MT+ GG++AMNR GM + SS   QMSFETT AF+T AA+AG  + LKSPSA IV+G+    GTG FDL
Sbjct:  130 LMSNDIWAIHQAYGVEAARNNIVEQIRSVFGAYGIEVDPRHLSLIADYMTYEGGFKAMNRGGMEEISSAFLQMSFETTAAFMTNAALAGRKEYLKSPSANIVLGQPMKHGTGAFDL 245
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BLAST of mRNA_H-elongata_contig132636.2334.1 vs. uniprot
Match: A0A507C9Q6_9FUNG (DNA-directed RNA polymerase subunit n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C9Q6_9FUNG)

HSP 1 Score: 152 bits (383), Expect = 3.390e-40
Identity = 75/122 (61.48%), Postives = 92/122 (75.41%), Query Frame = 1 
Query:    7 SNDVWAMCQTYGVEAARASIVAEIAGVFGVYGISVDPRHLGLVADHMTFYGGYRAMNRIGMADFSSPCQQMSFETTTAFLTKAAVAGHSDKLKSPSARIVMGRVGTFGTGMFDLRQPAEITV 372
            +ND++A+  TYGVEAARA+IV EIA VFGVYGISVD RHL L+AD+MTF GGY+A NR+GM    SP  QMSFETTT+FLT A ++G  D L+SPSAR+VMG+    GTG F +R P    +
Sbjct: 1706 TNDIYAVLTTYGVEAARAAIVGEIASVFGVYGISVDKRHLSLIADYMTFEGGYKAFNRMGMNSNPSPFAQMSFETTTSFLTAATLSGDFDSLQSPSARLVMGQPTRGGTGAFQIRHPINTPI 1827
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132636.2334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNY3_ECTSI9.410e-6485.95DNA-directed RNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5KJ16_9PHAE1.290e-6185.12DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A836C8M0_9STRA1.010e-4567.21DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
W7TZA0_9STRA2.220e-4464.75DNA-directed RNA polymerase n=1 Tax=Nannochloropsi... [more]
K8YRY5_NANGC2.260e-4464.75DNA-directed RNA polymerase subunit n=2 Tax=Monodo... [more]
A0A7R9ZT77_9STRA3.680e-4465.52DNA-directed RNA polymerase n=1 Tax=Craspedostauro... [more]
A0A7S2G4R6_9STRA1.980e-4364.96DNA-directed RNA polymerase n=1 Tax=Florenciella p... [more]
A0A7S1GNJ0_CYCTE2.210e-4260.33DNA-directed RNA polymerase n=1 Tax=Cyclophora ten... [more]
A0A7S0PVI6_9STRA5.820e-4262.93DNA-directed RNA polymerase n=1 Tax=Asterionellops... [more]
A0A507C9Q6_9FUNG3.390e-4061.48DNA-directed RNA polymerase subunit n=1 Tax=Synchy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132636contigH-elongata_contig132636:1212..1586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.9
Seed ortholog evalue6.5e-49
Seed eggNOG ortholog2880.D7FNY3
Preferred nameRPA1
KEGG rclassRC02795
KEGG koko:K02999
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00182
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005736,GO:0005911,GO:0006139,GO:0006351,GO:0006360,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0030054,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0055029,GO:0055044,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.negative regulation of protein localization to nucleolus
EggNOG OGsCOG0086@1,KOG0262@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA polymerase 1-4 RNA polymerase I large subunit
Ec32 orthologEc-10_004770.1
Exons1
Model size375
Cds size351
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929787.8611228-CDS-H-elongata_contig132636:1211..15621622929787.8611228-CDS-H-elongata_contig132636:1211..1562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132636 1212..1562 -
1691679157.6874287-CDS-H-elongata_contig132636:1211..15621691679157.6874287-CDS-H-elongata_contig132636:1211..1562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132636 1212..1562 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929787.8740363-UTR-H-elongata_contig132636:1562..15861622929787.8740363-UTR-H-elongata_contig132636:1562..1586Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132636 1563..1586 -
1691679157.7015557-UTR-H-elongata_contig132636:1562..15861691679157.7015557-UTR-H-elongata_contig132636:1562..1586Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132636 1563..1586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132636.2334.1prot_H-elongata_contig132636.2334.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132636 1212..1562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132636.2334.1

>prot_H-elongata_contig132636.2334.1 ID=prot_H-elongata_contig132636.2334.1|Name=mRNA_H-elongata_contig132636.2334.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
MCQTYGVEAARASIVAEIAGVFGVYGISVDPRHLGLVADHMTFYGGYRAM
NRIGMADFSSPCQQMSFETTTAFLTKAAVAGHSDKLKSPSARIVMGRVGT
FGTGMFDLRQPAEITV*
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mRNA from alignment at H-elongata_contig132636:1212..1586-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132636.2334.1 ID=mRNA_H-elongata_contig132636.2334.1|Name=mRNA_H-elongata_contig132636.2334.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=375bp|location=Sequence derived from alignment at H-elongata_contig132636:1212..1586- (Himanthalia elongata Himel1 dioecious)
CTGACCAGCAACGATGTGTGGGCGATGTGCCAAACATACGGCGTCGAGGC
TGCAAGAGCGTCGATCGTAGCGGAAATAGCCGGCGTGTTTGGGGTCTACG
GTATCTCCGTAGATCCTCGACATCTTGGACTCGTGGCCGATCACATGACC
TTTTACGGGGGTTATCGCGCCATGAACCGTATAGGAATGGCCGATTTTTC
ATCGCCTTGTCAGCAGATGAGCTTCGAAACGACGACTGCTTTCCTCACCA
AGGCTGCCGTGGCAGGCCATAGCGACAAGCTTAAATCGCCTTCGGCTAGG
ATCGTGATGGGTCGCGTTGGGACGTTTGGGACAGGGATGTTCGACTTGCG
CCAGCCGGCTGAGATTACCGTATAG
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Coding sequence (CDS) from alignment at H-elongata_contig132636:1212..1586-

>mRNA_H-elongata_contig132636.2334.1 ID=mRNA_H-elongata_contig132636.2334.1|Name=mRNA_H-elongata_contig132636.2334.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig132636:1212..1586- (Himanthalia elongata Himel1 dioecious)
ATGTGCCAAACATACGGCGTCGAGGCTGCAAGAGCGTCGATCGTAGCGGA
AATAGCCGGCGTGTTTGGGGTCTACGGTATCTCCGTAGATCCTCGACATC
TTGGACTCGTGGCCGATCACATGACCTTTTACGGGGGTTATCGCGCCATG
AACCGTATAGGAATGGCCGATTTTTCATCGCCTTGTCAGCAGATGAGCTT
CGAAACGACGACTGCTTTCCTCACCAAGGCTGCCGTGGCAGGCCATAGCG
ACAAGCTTAAATCGCCTTCGGCTAGGATCGTGATGGGTCGCGTTGGGACG
TTTGGGACAGGGATGTTCGACTTGCGCCAGCCGGCTGAGATTACCGTATA
GATGTGCCAAACATACGGCGTCGAGGCTGCAAGAGCGTCGATCGTAGCGG
AAATAGCCGGCGTGTTTGGGGTCTACGGTATCTCCGTAGATCCTCGACAT
CTTGGACTCGTGGCCGATCACATGACCTTTTACGGGGGTTATCGCGCCAT
GAACCGTATAGGAATGGCCGATTTTTCATCGCCTTGTCAGCAGATGAGCT
TCGAAACGACGACTGCTTTCCTCACCAAGGCTGCCGTGGCAGGCCATAGC
GACAAGCTTAAATCGCCTTCGGCTAGGATCGTGATGGGTCGCGTTGGGAC
GTTTGGGACAGGGATGTTCGACTTGCGCCAGCCGGCTGAGATTACCGTAT
AG
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