mRNA_H-elongata_contig13261.2331.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13261.2331.1
Unique NamemRNA_H-elongata_contig13261.2331.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13261.2331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13261contigH-elongata_contig13261:1763..2926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size591
Cds size591
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929787.4635134-CDS-H-elongata_contig13261:1762..18391622929787.4635134-CDS-H-elongata_contig13261:1762..1839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13261 1763..1839 -
1691679157.5157015-CDS-H-elongata_contig13261:1762..18391691679157.5157015-CDS-H-elongata_contig13261:1762..1839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13261 1763..1839 -
1622929787.4795947-CDS-H-elongata_contig13261:2412..29261622929787.4795947-CDS-H-elongata_contig13261:2412..2926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13261 2413..2926 -
1691679157.5242085-CDS-H-elongata_contig13261:2412..29261691679157.5242085-CDS-H-elongata_contig13261:2412..2926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13261 2413..2926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13261.2331.1prot_H-elongata_contig13261.2331.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13261 1763..2926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13261.2331.1

>prot_H-elongata_contig13261.2331.1 ID=prot_H-elongata_contig13261.2331.1|Name=mRNA_H-elongata_contig13261.2331.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=197bp
MVNLTSKLCAHDGCSTHPNFGLPGSGKLEFCFIHKGADMKNLRRKSCAHD
GCLTWPSYGLPGTRKANFCAKHKETGMIYIKKQLCTQDGFSSRPSYGLPG
ASTVIFSSQNEREAMKGLISKSCVDNGRSMQPNYGVPFSKRVEISVGIRD
IKKESCLGDGCSANKKTIGVTEAGAVAAKYFTKEENCKRVTVGSVKR
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mRNA from alignment at H-elongata_contig13261:1763..2926-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13261.2331.1 ID=mRNA_H-elongata_contig13261.2331.1|Name=mRNA_H-elongata_contig13261.2331.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1164bp|location=Sequence derived from alignment at H-elongata_contig13261:1763..2926- (Himanthalia elongata Himel1 dioecious)
ATGGTAAATCTTACAAGCAAGTTGTGTGCACACGATGGGTGCTCCACTCA
TCCCAATTTTGGCCTACCAGGATCCGGAAAATTGGAATTCTGCTTCATAC
ACAAGGGAGCCGATATGAAAAATCTCAGAAGGAAGTCGTGTGCACACGAT
GGGTGCTTGACATGGCCCAGCTATGGCCTGCCAGGCACCAGGAAGGCGAA
CTTTTGCGCCAAGCACAAGGAGACGGGTATGATATATATAAAAAAGCAGC
TATGCACGCAAGACGGGTTTTCTTCTCGTCCCAGCTACGGCCTACCGGGA
GCTAGCACGGTAATATTTTCCTCTCAGAACGAGAGGGAAGCAATGAAAGG
CCTCATAAGTAAGTCGTGCGTGGATAACGGGCGCTCTATGCAGCCCAACT
ACGGTGTGCCATTCAGCAAGAGGGTCGAGATCTCGGTGGGAATCAGAGAC
ATCAAAAAAGAATCGTGCTTGGGTGATGGCTGCTCCGCAAATAAGAAGAC
GATCGGAGTAACAGGCAAGGCGATTGTAACATATTGATTCGAGGATTAAT
ATAGTGAGACGAGTTTTCAGGCAGGTTGTTACCATAATATGGAAGTCTGG
CGGGGGAAAACACACAGAATTGGTTGAAAACCGACATGAAGGGGTGCGGG
CGCGCCTTGCACAATGTTGTTATAACTACATCGTCGTTTATTTAATATTA
AATCTGTAGAATCGCCCTAAACAGATCATAGGGGAATCAGTTTTGGAATT
GTAGAGCGTTGTAGAGCGCTTTGCCTTCTCCCCCTAGAAGACACAATGGT
ATGTGCTCAATCGCGTATAATTCGTAGGGAATTGATCGTGCCAGACGCAC
ACCACGAATTCACATTGCTCAGGTAATAACGTAAACACTACGGTTTCCAA
GACTTATGATACCGATGTTACAAGTAGTTATCCTAACGGTTTTTTTTTAA
TATTTCATGTTCATTTCAGAATAAGAACGGTACGGGGAATCGTGGGTGTG
AAATGGTGAAGTCTTGTGTAAAGTTTATTTTTATTGCCTTTGCGTAACTA
TGAGAAGATCTCTATCCCCTCGCGATTTTGCACGCAGAGGCCGGAGCGGT
GGCAGCGAAATATTTTACTAAGGAGGAAAACTGTAAAAGGGTGACCGTTG
GCTCGGTGAAGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig13261:1763..2926-

>mRNA_H-elongata_contig13261.2331.1 ID=mRNA_H-elongata_contig13261.2331.1|Name=mRNA_H-elongata_contig13261.2331.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1182bp|location=Sequence derived from alignment at H-elongata_contig13261:1763..2926- (Himanthalia elongata Himel1 dioecious)
ATGGTAAATCTTACAAGCAAGTTGTGTGCACACGATGGGTGCTCCACTCA
TCCCAATTTTGGCCTACCAGGATCCGGAAAATTGGAATTCTGCTTCATAC
ACAAGGGAGCCGATATGAAAAATCTCAGAAGGAAGTCGTGTGCACACGAT
GGGTGCTTGACATGGCCCAGCTATGGCCTGCCAGGCACCAGGAAGGCGAA
CTTTTGCGCCAAGCACAAGGAGACGGGTATGATATATATAAAAAAGCAGC
TATGCACGCAAGACGGGTTTTCTTCTCGTCCCAGCTACGGCCTACCGGGA
GCTAGCACGGTAATATTTTCCTCTCAGAACGAGAGGGAAGCAATGAAAGG
CCTCATAAGTAAGTCGTGCGTGGATAACGGGCGCTCTATGCAGCCCAACT
ACGGTGTGCCATTCAGCAAGAGGGTCGAGATCTCGGTGGGAATCAGAGAC
ATCAAAAAAGAATCGTGCTTGGGTGATGGCTGCTCCGCAAATAAGAAGAC
GATCGGAGTAACAGATGGTAAATCTTACAAGCAAGTTGTGTGCACACGAT
GGGTGCTCCACTCATCCCAATTTTGGCCTACCAGGATCCGGAAAATTGGA
ATTCTGCTTCATACACAAGGGAGCCGATATGAAAAATCTCAGAAGGAAGT
CGTGTGCACACGATGGGTGCTTGACATGGCCCAGCTATGGCCTGCCAGGC
ACCAGGAAGGCGAACTTTTGCGCCAAGCACAAGGAGACGGGTATGATATA
TATAAAAAAGCAGCTATGCACGCAAGACGGGTTTTCTTCTCGTCCCAGCT
ACGGCCTACCGGGAGCTAGCACGGTAATATTTTCCTCTCAGAACGAGAGG
GAAGCAATGAAAGGCCTCATAAGTAAGTCGTGCGTGGATAACGGGCGCTC
TATGCAGCCCAACTACGGTGTGCCATTCAGCAAGAGGGTCGAGATCTCGG
TGGGAATCAGAGACATCAAAAAAGAATCGTGCTTGGGTGATGGCTGCTCC
GCAAATAAGAAGACGATCGGAGTAACAGAGGCCGGAGCGGTGGCAGCGAA
ATATTTTACTAAGGAGGAAAACTGTAAAAGGGTGACCGTTGGCTCGGTGA
AGCGGAGGCCGGAGCGGTGGCAGCGAAATATTTTACTAAGGAGGAAAACT
GTAAAAGGGTGACCGTTGGCTCGGTGAAGCGG
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