mRNA_H-elongata_contig132590.2330.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132590.2330.1
Unique NamemRNA_H-elongata_contig132590.2330.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig132590.2330.1 vs. uniprot
Match: D7FKR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKR3_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 3.390e-32
Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 1 
Query:    1 NILVCEAGDIGHVLRTMGSRRRHPQHTINFYLWEGQIEVLARQLLLLHVMKDWQLPVRQRANVFLEIFGNAFVQ 222
            NIL+C+ GDIGHVLRT+G+RR HPQHTI+ Y+WE QIEVLAR LLLL V +DW+LP+RQRANVFLEIFGN  VQ
Sbjct:   33 NILICQPGDIGHVLRTIGTRRGHPQHTIHLYIWERQIEVLARHLLLLQVAQDWELPIRQRANVFLEIFGNCLVQ 106
[Close]
BLAST of mRNA_H-elongata_contig132590.2330.1 vs. uniprot
Match: A0A5D6Y646_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y646_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 5.760e-18
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:    4 ILVCEAGDIGHVLRTMGSRRRHPQHT--INFYLWEGQIEVLARQLLLLHVMKDWQLPVRQRANVFLEIFGNAFVQ 222
            +L+   GDI H+L T+  RRRH  HT  ++ Y++E   EVLAR LLLL + +DW+LP+RQR N+FLE+FGNA VQ
Sbjct:   47 VLLVGPGDIRHILATLAHRRRHAAHTRALHIYVFERASEVLARHLLLLQLAQDWELPLRQRCNLFLEVFGNARVQ 121
[Close]
BLAST of mRNA_H-elongata_contig132590.2330.1 vs. uniprot
Match: A0A7S3MGV5_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGV5_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.490e-17
Identity = 40/80 (50.00%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    1 NILVCEAGDIGHVLRTMGSRRRHPQH------TINFYLWEGQIEVLARQLLLLHVMKDWQLPVRQRANVFLEIFGNAFVQ 222
            NIL+ + GDI H+L T+  RRRH +        INFYL+E  +E +AR LLLL ++ D+++P+RQRAN++LE+FGN  VQ
Sbjct:   44 NILLIQPGDIRHILYTVSQRRRHVKKFGGSLPKINFYLFETPVETIARDLLLLQILTDYEVPIRQRANIYLEVFGNNKVQ 123
[Close]
BLAST of mRNA_H-elongata_contig132590.2330.1 vs. uniprot
Match: A0A024GAP1_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GAP1_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.950e-17
Identity = 44/75 (58.67%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:    1 NILVCEAGDIGHVLRTMGSRRRH-PQHTINFYLWEGQIEVLARQLLLLHVMKDWQLPVRQRANVFLEIFGNAFVQ 222
            NIL+    DI HVL T+ ++R   P   +N YL+E  IEVLARQLLLL V  D +LP RQR N FLEIFGNAF+Q
Sbjct:   47 NILLVGPSDIRHVLHTIANKRHTAPNRPVNIYLYEKSIEVLARQLLLLQVFFDSELPFRQRCNAFLEIFGNAFIQ 121
[Close]
BLAST of mRNA_H-elongata_contig132590.2330.1 vs. uniprot
Match: A0A397AQF6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AQF6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.160e-17
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    4 ILVCEAGDIGHVLRTMGSRRRHPQHTINFYLWEGQIEVLARQLLLLHVMKDWQLPVRQRANVFLEIFGNAFVQ 222
            +LV   GDI HVL T+   RR  +  ++ YL+E   E LAR LLLL ++ DW++P+RQR N FLE+FGNA VQ
Sbjct:   36 VLVLSPGDIRHVLTTIARSRRWKKRPLHIYLYEKSPECLARALLLLQIVNDWEVPLRQRCNTFLEVFGNALVQ 108
[Close]
BLAST of mRNA_H-elongata_contig132590.2330.1 vs. uniprot
Match: A0A7S2BEA7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BEA7_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.630e-17
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:    1 NILVCEAGDIGHVLRTMGSRRRHPQ-HTINFYLWEGQIEVLARQLLLLHVMKDWQLPVRQRANVFLEIFGNAFVQ 222
            +ILV + GDI H+L ++  RRR P    ++FYL E  +EVLAR LLLL +  DW+LP+RQRAN+FLE FGN+ +Q
Sbjct:   40 SILVAQPGDIRHLLCSISRRRRRPGVGALHFYLIEQPVEVLARHLLLLQIATDWELPIRQRANLFLEAFGNSLLQ 114
[Close]
BLAST of mRNA_H-elongata_contig132590.2330.1 vs. uniprot
Match: A0A2D4CK38_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CK38_PYTIN)

HSP 1 Score: 83.6 bits (205), Expect = 2.660e-17
Identity = 40/79 (50.63%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:    1 NILVCEAGDIGHVLRTMGSRRRH-----PQHTINFYLWEGQIEVLARQLLLLHVMKDWQLPVRQRANVFLEIFGNAFVQ 222
            N+L+   GDI HVL T+  RRRH     P   ++ Y++E  +E LAR LLL  + +DW LP+RQR N FLE+FGNA VQ
Sbjct:   43 NLLLIGPGDIRHVLHTVARRRRHASKDAPLRPLHIYVYERSVETLARHLLLWAIAQDWDLPLRQRCNTFLEVFGNALVQ 121
[Close]
BLAST of mRNA_H-elongata_contig132590.2330.1 vs. uniprot
Match: A0A6A5AKG1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AKG1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.950e-17
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    4 ILVCEAGDIGHVLRTMGSRRRHPQHTINFYLWEGQIEVLARQLLLLHVMKDWQLPVRQRANVFLEIFGNAFVQ 222
            +LV   GDI HVL T+   RR  +  ++ YL+E   E LAR LLLL ++ DW++P+RQR N FLE+FGNA VQ
Sbjct:   53 VLVLSPGDIRHVLATIARSRRWKKRPLHIYLYEKSPECLARALLLLQIVNDWEVPLRQRCNTFLEVFGNALVQ 125
[Close]
BLAST of mRNA_H-elongata_contig132590.2330.1 vs. uniprot
Match: A0A425DN38_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DN38_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 8.590e-17
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    4 ILVCEAGDIGHVLRTMGSRRRHPQHTINFYLWEGQIEVLARQLLLLHVMKDWQLPVRQRANVFLEIFGNAFVQ 222
            +LV   GDI HVL T+   RR  +  ++ YL+E   E LAR LLLL ++ DW++P+RQR N FLE+FGNA VQ
Sbjct:   36 VLVLSPGDIRHVLATIARSRRWKKRPLHIYLYEKSPECLARALLLLQIVNDWEVPLRQRCNTFLEVFGNALVQ 108
[Close]
BLAST of mRNA_H-elongata_contig132590.2330.1 vs. uniprot
Match: A0A418EP78_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418EP78_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.110e-16
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    4 ILVCEAGDIGHVLRTMGSRRRHPQHTINFYLWEGQIEVLARQLLLLHVMKDWQLPVRQRANVFLEIFGNAFVQ 222
            +LV   GDI HVL T+   RR  +  ++ YL+E   E LAR LLLL ++ DW++P+RQR N FLE+FGNA VQ
Sbjct:   36 VLVLSPGDIRHVLATIARSRRWKKRPLHIYLYEKSPECLARALLLLQIVNDWEVPLRQRCNTFLEVFGNALVQ 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132590.2330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKR3_ECTSI3.390e-3275.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5D6Y646_9STRA5.760e-1854.67Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S3MGV5_9STRA1.490e-1750.00Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A024GAP1_9STRA1.950e-1758.67Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A397AQF6_9STRA2.160e-1752.05Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A7S2BEA7_9STRA2.630e-1754.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2D4CK38_PYTIN2.660e-1750.63Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A6A5AKG1_9STRA3.950e-1752.05Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A425DN38_9STRA8.590e-1752.05Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A418EP78_9STRA1.110e-1652.05Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132590contigH-elongata_contig132590:985..1458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue6.1e-27
Seed eggNOG ortholog2880.D7FKR3
Preferred nameDNAAF3
KEGG koko:K19752
GOsGO:0000226,GO:0001578,GO:0003341,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008150,GO:0009799,GO:0009855,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032501,GO:0032502,GO:0034622,GO:0035082,GO:0043933,GO:0044085,GO:0044458,GO:0044782,GO:0048513,GO:0048731,GO:0048856,GO:0060271,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0072359,GO:0120031,GO:0120036
EggNOG free text desc.motile cilium assembly
EggNOG OGs28KT2@1,2QT97@2759
Ec32 ortholog descriptionDynein assembly factor 3, C-terminal domain
Ec32 orthologEc-21_001820.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929787.3806689-CDS-H-elongata_contig132590:984..10711622929787.3806689-CDS-H-elongata_contig132590:984..1071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132590 985..1071 +
1691679157.4938602-CDS-H-elongata_contig132590:984..10711691679157.4938602-CDS-H-elongata_contig132590:984..1071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132590 985..1071 +
1622929787.4082282-CDS-H-elongata_contig132590:1311..14581622929787.4082282-CDS-H-elongata_contig132590:1311..1458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132590 1312..1458 +
1691679157.5069418-CDS-H-elongata_contig132590:1311..14581691679157.5069418-CDS-H-elongata_contig132590:1311..1458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132590 1312..1458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132590.2330.1prot_H-elongata_contig132590.2330.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132590 985..1458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132590.2330.1

>prot_H-elongata_contig132590.2330.1 ID=prot_H-elongata_contig132590.2330.1|Name=mRNA_H-elongata_contig132590.2330.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
NILVCEAGDIGHVLRTMGSRRRHPQHTINFYLWEGQIEVLARQLLLLHVM
KDWQLPVRQRANVFLEIFGNAFVQVLL*
back to top

mRNA from alignment at H-elongata_contig132590:985..1458+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132590.2330.1 ID=mRNA_H-elongata_contig132590.2330.1|Name=mRNA_H-elongata_contig132590.2330.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=474bp|location=Sequence derived from alignment at H-elongata_contig132590:985..1458+ (Himanthalia elongata Himel1 dioecious)
AACATCTTGGTCTGTGAGGCGGGAGACATTGGCCATGTGCTTAGAACCAT
GGGTTCGCGACGGCGGCACCCTCAGCACACCATAAATGTGCGCAAATACG
CTAGCAGTTGAAATATATATATAGTGGGTCCTACGAGCCTTCTCCAGATT
CCAAAATATTGTCAAGAAATCGTTGTAGCTTTAGCTGGTTATGGAAATGA
TTTCTGAAAGCATAACATTGTCCCTCTCTTATTATTATTATAACGTTACC
TTATAAGGGCGTGTAGAGCTAAGATTTTCACCGGTTGATGGCGTTTTGGC
TTGCTCGCCATCGAAACTTGCTCTCAGTTCTACTTATGGGAGGGCCAGAT
CGAGGTACTTGCGCGTCAGCTTCTTCTTCTACATGTTATGAAGGATTGGC
AGCTCCCTGTCCGCCAGAGGGCGAACGTGTTCCTCGAAATCTTTGGGAAT
GCATTCGTTCAGGTATTATTGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig132590:985..1458+

>mRNA_H-elongata_contig132590.2330.1 ID=mRNA_H-elongata_contig132590.2330.1|Name=mRNA_H-elongata_contig132590.2330.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig132590:985..1458+ (Himanthalia elongata Himel1 dioecious)
AACATCTTGGTCTGTGAGGCGGGAGACATTGGCCATGTGCTTAGAACCAT
GGGTTCGCGACGGCGGCACCCTCAGCACACCATAAATAACATCTTGGTCT
GTGAGGCGGGAGACATTGGCCATGTGCTTAGAACCATGGGTTCGCGACGG
CGGCACCCTCAGCACACCATAAATTTCTACTTATGGGAGGGCCAGATCGA
GGTACTTGCGCGTCAGCTTCTTCTTCTACATGTTATGAAGGATTGGCAGC
TCCCTGTCCGCCAGAGGGCGAACGTGTTCCTCGAAATCTTTGGGAATGCA
TTCGTTCAGGTATTATTGTAATTCTACTTATGGGAGGGCCAGATCGAGGT
ACTTGCGCGTCAGCTTCTTCTTCTACATGTTATGAAGGATTGGCAGCTCC
CTGTCCGCCAGAGGGCGAACGTGTTCCTCGAAATCTTTGGGAATGCATTC
GTTCAGGTATTATTGTAA
back to top