mRNA_H-elongata_contig13257.2327.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13257.2327.1 vs. uniprot
Match: D7FH74_ECTSI (Cyclin N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH74_ECTSI) HSP 1 Score: 203 bits (517), Expect = 1.030e-60 Identity = 101/181 (55.80%), Postives = 133/181 (73.48%), Query Frame = 2
Query: 68 EVTQFSADQADVFDDKYFA---FRYTFMQPPIMAIPGQLCVVKDT---PVPATVEEVYEFIKGLFVKTYLSSECSVICLIYIERLMQMARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKIKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGVIPFRRRYQAIL 592
EV F+A A+ FD++ F RY FM P MA+PG + +++ P TV+E+YEFIK LF K LSSECS++CLIY+ERLM+ ARVPLL TW+P++ C LLLASK+WQDL SWN EFS YP+Y +K+I++LE+ FL A++WD+++SSSLYAKYYFALRS + FRRRY +L
Sbjct: 120 EVHGFNAKMAEAFDEQQFVSPTLRYNFMHAPTMALPGVMFTLREVRSPPKAPTVDEIYEFIKTLFNKAQLSSECSLVCLIYVERLMETARVPLLPGTWKPVLLCGLLLASKVWQDLSSWNVEFSTVYPEYSLKNINRLELLFLGAMKWDMSISSSLYAKYYFALRSLTEKEDFRRRYNRVL 300
BLAST of mRNA_H-elongata_contig13257.2327.1 vs. uniprot
Match: A0A6H5JJI4_9PHAE (Cyclin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJI4_9PHAE) HSP 1 Score: 206 bits (524), Expect = 3.020e-59 Identity = 103/181 (56.91%), Postives = 134/181 (74.03%), Query Frame = 2
Query: 68 EVTQFSADQADVFDDKYFA---FRYTFMQPPIMAIPGQLCVVKDT---PVPATVEEVYEFIKGLFVKTYLSSECSVICLIYIERLMQMARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKIKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGVIPFRRRYQAIL 592
EV F+A A+VFD++ F RY FM P MA+PG + +++ P TV+E+YEFIK LF K LSSECS++CLIY+ERLM+ ARVPLL TW+P++ C LLLASK+WQDL SWN EFS YP+Y +KSI++LE+ FL A++WD+++SSSLYAKYYFALRS + FRRRY +L
Sbjct: 368 EVHGFNAKMAEVFDEQQFVSPTLRYNFMHAPTMALPGVMFTLREVRSPPKAPTVDEIYEFIKTLFNKAQLSSECSLVCLIYVERLMETARVPLLPGTWKPVLLCGLLLASKVWQDLSSWNVEFSTVYPEYSLKSINRLELLFLGAMKWDMSISSSLYAKYYFALRSLTEKEDFRRRYNRVL 548
BLAST of mRNA_H-elongata_contig13257.2327.1 vs. uniprot
Match: A0A835YNR4_9STRA (Cyclin N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR4_9STRA) HSP 1 Score: 174 bits (442), Expect = 8.220e-48 Identity = 107/261 (41.00%), Postives = 151/261 (57.85%), Query Frame = 2
Query: 2 VAVVVYEHVQTCERQ----------------------------------AKLEMAPEVTQ--FSADQADVFDDKYFA---FRYTFMQPPIMAIPGQL-------CVVKDTPVPATVEEVYEFIKGLFVKTYLSSECSVICLIYIERLMQMARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKIKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGVIPFRRRYQAILLQVERDALLCDGVAKDKL 646
VAVVV++HVQ CER+ A L + P + F +AD+F ++++ +R TF++ + G L V+ P +VE +YEFI+ LF + LSSECS++CLIYIERLM++A VPLL +TW+P++ C LLLASK+WQDL SWN EFS YP++ ++SI++LE +L ++WDL +S+SLYAKYYFALRS + FRRRY + V+ DA D V + L
Sbjct: 245 VAVVVFQHVQNCERRLARVKRAAEHPPRPPPTRAPPHAPFGGGQPGGVSAPLPVTPGAVREAFDPAKADLFHERHYVSPRYRCTFVR--ALGAAGALPCSAFAMAKVETEPTAPSVEAIYEFIRTLFNRACLSSECSLVCLIYIERLMEVAAVPLLATTWKPVVLCGLLLASKVWQDLSSWNVEFSTVYPEFSLRSINRLEHVYLAQVQWDLYISASLYAKYYFALRSLAEGRDFRRRYNCV---VQIDAPRADRVQERSL 500
BLAST of mRNA_H-elongata_contig13257.2327.1 vs. uniprot
Match: A0A7S1G1W2_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G1W2_9STRA) HSP 1 Score: 159 bits (402), Expect = 1.320e-45 Identity = 75/135 (55.56%), Postives = 100/135 (74.07%), Query Frame = 2
Query: 188 DTPVPATVEEVYEFIKGLFVKTYLSSECSVICLIYIERLMQMARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKIKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGVIPFRRRYQAIL 592
D P P T EE+Y F + LF K LS+ECS++CL+Y+ERLM++A + LL + WRPI+ C +L+ASK+WQDL SWN EFS YP Y + S+++LE FL+ L WDL +S S+YAKYYFALRS S FRRRY +++
Sbjct: 5 DYPAP-TAEEIYNFARHLFTKAQLSAECSIVCLVYVERLMEVAGLLLLGTNWRPILLCGMLMASKVWQDLSSWNVEFSTVYPQYSLASVNRLERAFLQTLRWDLYISGSVYAKYYFALRSMSEKKNFRRRYISMM 138
BLAST of mRNA_H-elongata_contig13257.2327.1 vs. uniprot
Match: A0A7S4J8M4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J8M4_9STRA) HSP 1 Score: 172 bits (435), Expect = 3.520e-45 Identity = 97/205 (47.32%), Postives = 134/205 (65.37%), Query Frame = 2
Query: 2 VAVVVYEHVQTCERQAK--LEMAPEVTQFSADQADVFDDKYFA---FRYTFMQPPIMAIPGQ---LCVVKDTPVPATVEEVYEFIKGLFVKTYLSSECSVICLIYIERLMQMARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKIKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGVIPFRRRYQAIL 592
VA++++EHV ER+ + + + F D D+F + F ++ + ++ P MA PG L +KD T E+YEF LF LSSECS++CLIYIERLM++ARVPL+ STWRP+ C LLLASK+WQDL SWN EF++ YP + +++I++LE FL ++WDL +SSSLYAKYYFALRS FRRRY ++
Sbjct: 871 VAMILHEHVTKIERRFEGGVRGVDDTGLFLPDMRDLFAESNFVTPRYKCSLVRLP-MARPGAVYGLRRIKDDCSAPTTNEIYEFGHRLFKSVQLSSECSIVCLIYIERLMEVARVPLVSSTWRPVFMCGLLLASKVWQDLSSWNIEFASVYPQFSLEAINRLEATFLRTVKWDLYISSSLYAKYYFALRSLLEKQDFRRRYNRMV 1074
BLAST of mRNA_H-elongata_contig13257.2327.1 vs. uniprot
Match: A0A1E7FWS6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWS6_9STRA) HSP 1 Score: 162 bits (409), Expect = 6.810e-45 Identity = 89/176 (50.57%), Postives = 117/176 (66.48%), Query Frame = 2
Query: 80 FSADQADVF-DDKYFAFRYTFMQPPI-MAIPGQLCVVKDTPVPATVE---EVYEFIKGLFVKTYLSSECSVICLIYIERLMQMARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKIKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGVIPFRRRYQAIL 592
F A D+F +D Y Y I MA PG + ++ V + E+Y+F + LF LSSECS++CLIY+ERLM++A+VPLL TWRPI CALLLASK+WQDL SWN EFS+ YP + ++SI+KLE+ FL ++WDL +SSS YAKYYFALRS FR+RY ++
Sbjct: 98 FHASMRDIFNEDCYRTPTYKCHMARIPMARPGMVYGLRKVQVMYRIPSETEIYDFAQQLFQSVQLSSECSIVCLIYVERLMEIAKVPLLACTWRPIFMCALLLASKVWQDLSSWNIEFSSVYPQFSLESINKLELNFLRNVKWDLYISSSSYAKYYFALRSLVEKQDFRQRYNRMV 273
BLAST of mRNA_H-elongata_contig13257.2327.1 vs. uniprot
Match: B8BQF5_THAPS (Cyclin N-terminal domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQF5_THAPS) HSP 1 Score: 169 bits (428), Expect = 2.360e-44 Identity = 92/208 (44.23%), Postives = 139/208 (66.83%), Query Frame = 2
Query: 2 VAVVVYEHVQTCERQAKLEM--APEVTQFSADQADVFDDKYFA---FRYTFMQPPIMAIPG------QLCVVKDTPVPATVEEVYEFIKGLFVKTYLSSECSVICLIYIERLMQMARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKIKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGVIPFRRRYQAIL 592
VA+++++H+ E + + + + F + D+F + FA ++ + ++ P MA PG ++ VV +TP + +E+YEF LF K LSSECS++CLIY+E+LM++A+VPL+ STWRPI C LLLASK+WQDL SWN EF+ YP + + +I++LE++FL+ ++WDL +SSSLYAKYYFALRS FR RY ++
Sbjct: 641 VAIILHQHIVKIEHRFETGVRGVDDTGLFKSSMRDLFSEDNFATPRYKCSMVRVP-MARPGVVYSMRKIRVVYNTP---STDEIYEFAHQLFKKVQLSSECSIVCLIYVEKLMEVAKVPLVRSTWRPIFMCGLLLASKVWQDLSSWNIEFAGVYPQFSLDAINRLEVQFLKCIKWDLYISSSLYAKYYFALRSLLEKSGFRDRYNQMV 844
BLAST of mRNA_H-elongata_contig13257.2327.1 vs. uniprot
Match: A0A7S2A727_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A727_9STRA) HSP 1 Score: 168 bits (426), Expect = 2.680e-44 Identity = 95/203 (46.80%), Postives = 127/203 (62.56%), Query Frame = 2
Query: 2 VAVVVYEHVQTCE-RQAKLEMAPEVTQFSADQADVFDDKYFAF-RYTFMQPPI-MAIPGQLCVVKDTPVPATV---EEVYEFIKGLFVKTYLSSECSVICLIYIERLMQMARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKIKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGVIPFRRRYQAIL 592
VA+++ +H+ E R +++ E F + D F + FA RY P + MA PG +C + V T+ E+YEF LF LSSECS++CLIY+ERLM+M +VPLL TWRPI C LLLASK+WQDL SWN EF+ YP Y + +I++LE FL ++W+L +SSSLYAKYYFALRS FR RY ++
Sbjct: 525 VAMILQQHIVKIEDRFERMKGHDEKGLFLSSMKDAFSEDRFATPRYKCSMPRVPMARPGLICAQRQIRVKHTIPTSNEIYEFAHQLFKAVQLSSECSIVCLIYVERLMEMGKVPLLACTWRPIFMCGLLLASKVWQDLSSWNIEFALVYPQYSVDAINRLEKLFLSKVKWELYISSSLYAKYYFALRSLLEKQDFRNRYNRMV 727
BLAST of mRNA_H-elongata_contig13257.2327.1 vs. uniprot
Match: A0A7S3K4U9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4U9_9STRA) HSP 1 Score: 162 bits (411), Expect = 3.140e-44 Identity = 93/209 (44.50%), Postives = 139/209 (66.51%), Query Frame = 2
Query: 5 AVVVYEHVQTCERQA---KLEMAPEVTQ---FSADQADVFDD-KYFAFRYT--FMQPPIMAIPGQLCVVKDTPV----PATVEEVYEFIKGLFVKTYLSSECSVICLIYIERLMQMARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKIKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGVIPFRRRYQAIL 592
A+VV++H+ TCE++ L+ E+++ F + +FD+ KY +YT + PI++ PG + + P+ P+ + +Y+F+ LF + +LSSECS++CLIYIERLM +V LL++ WRPI+ C++LLASK+WQD SWN EF+A YP+Y + +I+ LE +F+ AL WDL +S SLYAKYYFALRS S FRR+Y +
Sbjct: 161 ALVVHKHLTTCEQRELRRSLQAPNEISESRRFRKEANAMFDEAKYLEPKYTTTLYRLPILS-PGFHFISQRIPLEYLNPSNTD-IYDFLVELFERAHLSSECSIVCLIYIERLMDKGKVALLKNNWRPIVLCSMLLASKVWQDCASWNIEFAAIYPEYSLPAINLLERKFVSALGWDLYISQSLYAKYYFALRSLSEKSDFRRKYNIFI 367
BLAST of mRNA_H-elongata_contig13257.2327.1 vs. uniprot
Match: A0A812XPB8_SYMMI (CCNY protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XPB8_SYMMI) HSP 1 Score: 161 bits (407), Expect = 3.220e-44 Identity = 95/236 (40.25%), Postives = 147/236 (62.29%), Query Frame = 2
Query: 2 VAVVVYEHVQTCERQAKLEMAPEVTQ---FSADQADVFDDKYF---AFRYTFMQPPIMAIPGQLCV----VKDTPVPATVEEVYEFIKGLFVKTYLSSECSVICLIYIERLMQMARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKIKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGVIPFRRRYQAILLQV---ERDALLCDGVAKDKLLPSRIFPS 670
V+VV+++H+ TCE+ K E P++++ F + + F + F + Y F + + G LC ++ T ++ EV+ F++ LF + LS+ECS++CLIY+ERLM+ A VPL TWRP++ C LLLASK+WQDL SWN E + YP + +++I++LE F ++WDL +SSSLYAKYYFALRS + FRR Y ++LQ E+ A+ + V K+ +L + + S
Sbjct: 108 VSVVLHKHITTCEKSYK-EAPPDMSESGTFHTSKMETFSEDNFISPVYVYHFARSVPLTRVG-LCYGLRKLQSTYNHPSLGEVHIFLRTLFGEAQLSAECSIVCLIYVERLMEQANVPLTSKTWRPVVMCGLLLASKVWQDLSSWNIEIAQIYPQFTLQNINRLERTFCHHIKWDLYISSSLYAKYYFALRSLTEKSDFRRNYNTMVLQAPGAEQVAIRSENV-KETMLHTTLSKS 340 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13257.2327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13257.2327.1 >prot_H-elongata_contig13257.2327.1 ID=prot_H-elongata_contig13257.2327.1|Name=mRNA_H-elongata_contig13257.2327.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=230bp MAPEVTQFSADQADVFDDKYFAFRYTFMQPPIMAIPGQLCVVKDTPVPATback to top mRNA from alignment at H-elongata_contig13257:6163..8335- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13257.2327.1 ID=mRNA_H-elongata_contig13257.2327.1|Name=mRNA_H-elongata_contig13257.2327.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2173bp|location=Sequence derived from alignment at H-elongata_contig13257:6163..8335- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13257:6163..8335- >mRNA_H-elongata_contig13257.2327.1 ID=mRNA_H-elongata_contig13257.2327.1|Name=mRNA_H-elongata_contig13257.2327.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1380bp|location=Sequence derived from alignment at H-elongata_contig13257:6163..8335- (Himanthalia elongata Himel1 dioecious)back to top |