mRNA_H-elongata_contig13257.2327.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13257.2327.1
Unique NamemRNA_H-elongata_contig13257.2327.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13257.2327.1 vs. uniprot
Match: D7FH74_ECTSI (Cyclin N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH74_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 1.030e-60
Identity = 101/181 (55.80%), Postives = 133/181 (73.48%), Query Frame = 2
Query:   68 EVTQFSADQADVFDDKYFA---FRYTFMQPPIMAIPGQLCVVKDT---PVPATVEEVYEFIKGLFVKTYLSSECSVICLIYIERLMQMARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKIKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGVIPFRRRYQAIL 592
            EV  F+A  A+ FD++ F     RY FM  P MA+PG +  +++    P   TV+E+YEFIK LF K  LSSECS++CLIY+ERLM+ ARVPLL  TW+P++ C LLLASK+WQDL SWN EFS  YP+Y +K+I++LE+ FL A++WD+++SSSLYAKYYFALRS +    FRRRY  +L
Sbjct:  120 EVHGFNAKMAEAFDEQQFVSPTLRYNFMHAPTMALPGVMFTLREVRSPPKAPTVDEIYEFIKTLFNKAQLSSECSLVCLIYVERLMETARVPLLPGTWKPVLLCGLLLASKVWQDLSSWNVEFSTVYPEYSLKNINRLELLFLGAMKWDMSISSSLYAKYYFALRSLTEKEDFRRRYNRVL 300          
BLAST of mRNA_H-elongata_contig13257.2327.1 vs. uniprot
Match: A0A6H5JJI4_9PHAE (Cyclin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJI4_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 3.020e-59
Identity = 103/181 (56.91%), Postives = 134/181 (74.03%), Query Frame = 2
Query:   68 EVTQFSADQADVFDDKYFA---FRYTFMQPPIMAIPGQLCVVKDT---PVPATVEEVYEFIKGLFVKTYLSSECSVICLIYIERLMQMARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKIKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGVIPFRRRYQAIL 592
            EV  F+A  A+VFD++ F     RY FM  P MA+PG +  +++    P   TV+E+YEFIK LF K  LSSECS++CLIY+ERLM+ ARVPLL  TW+P++ C LLLASK+WQDL SWN EFS  YP+Y +KSI++LE+ FL A++WD+++SSSLYAKYYFALRS +    FRRRY  +L
Sbjct:  368 EVHGFNAKMAEVFDEQQFVSPTLRYNFMHAPTMALPGVMFTLREVRSPPKAPTVDEIYEFIKTLFNKAQLSSECSLVCLIYVERLMETARVPLLPGTWKPVLLCGLLLASKVWQDLSSWNVEFSTVYPEYSLKSINRLELLFLGAMKWDMSISSSLYAKYYFALRSLTEKEDFRRRYNRVL 548          
BLAST of mRNA_H-elongata_contig13257.2327.1 vs. uniprot
Match: A0A835YNR4_9STRA (Cyclin N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR4_9STRA)

HSP 1 Score: 174 bits (442), Expect = 8.220e-48
Identity = 107/261 (41.00%), Postives = 151/261 (57.85%), Query Frame = 2
Query:    2 VAVVVYEHVQTCERQ----------------------------------AKLEMAPEVTQ--FSADQADVFDDKYFA---FRYTFMQPPIMAIPGQL-------CVVKDTPVPATVEEVYEFIKGLFVKTYLSSECSVICLIYIERLMQMARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKIKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGVIPFRRRYQAILLQVERDALLCDGVAKDKL 646
            VAVVV++HVQ CER+                                  A L + P   +  F   +AD+F ++++    +R TF++   +   G L         V+  P   +VE +YEFI+ LF +  LSSECS++CLIYIERLM++A VPLL +TW+P++ C LLLASK+WQDL SWN EFS  YP++ ++SI++LE  +L  ++WDL +S+SLYAKYYFALRS +    FRRRY  +   V+ DA   D V +  L
Sbjct:  245 VAVVVFQHVQNCERRLARVKRAAEHPPRPPPTRAPPHAPFGGGQPGGVSAPLPVTPGAVREAFDPAKADLFHERHYVSPRYRCTFVR--ALGAAGALPCSAFAMAKVETEPTAPSVEAIYEFIRTLFNRACLSSECSLVCLIYIERLMEVAAVPLLATTWKPVVLCGLLLASKVWQDLSSWNVEFSTVYPEFSLRSINRLEHVYLAQVQWDLYISASLYAKYYFALRSLAEGRDFRRRYNCV---VQIDAPRADRVQERSL 500          
BLAST of mRNA_H-elongata_contig13257.2327.1 vs. uniprot
Match: A0A7S1G1W2_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G1W2_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.320e-45
Identity = 75/135 (55.56%), Postives = 100/135 (74.07%), Query Frame = 2
Query:  188 DTPVPATVEEVYEFIKGLFVKTYLSSECSVICLIYIERLMQMARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKIKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGVIPFRRRYQAIL 592
            D P P T EE+Y F + LF K  LS+ECS++CL+Y+ERLM++A + LL + WRPI+ C +L+ASK+WQDL SWN EFS  YP Y + S+++LE  FL+ L WDL +S S+YAKYYFALRS S    FRRRY +++
Sbjct:    5 DYPAP-TAEEIYNFARHLFTKAQLSAECSIVCLVYVERLMEVAGLLLLGTNWRPILLCGMLMASKVWQDLSSWNVEFSTVYPQYSLASVNRLERAFLQTLRWDLYISGSVYAKYYFALRSMSEKKNFRRRYISMM 138          
BLAST of mRNA_H-elongata_contig13257.2327.1 vs. uniprot
Match: A0A7S4J8M4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J8M4_9STRA)

HSP 1 Score: 172 bits (435), Expect = 3.520e-45
Identity = 97/205 (47.32%), Postives = 134/205 (65.37%), Query Frame = 2
Query:    2 VAVVVYEHVQTCERQAK--LEMAPEVTQFSADQADVFDDKYFA---FRYTFMQPPIMAIPGQ---LCVVKDTPVPATVEEVYEFIKGLFVKTYLSSECSVICLIYIERLMQMARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKIKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGVIPFRRRYQAIL 592
            VA++++EHV   ER+ +  +    +   F  D  D+F +  F    ++ + ++ P MA PG    L  +KD     T  E+YEF   LF    LSSECS++CLIYIERLM++ARVPL+ STWRP+  C LLLASK+WQDL SWN EF++ YP + +++I++LE  FL  ++WDL +SSSLYAKYYFALRS      FRRRY  ++
Sbjct:  871 VAMILHEHVTKIERRFEGGVRGVDDTGLFLPDMRDLFAESNFVTPRYKCSLVRLP-MARPGAVYGLRRIKDDCSAPTTNEIYEFGHRLFKSVQLSSECSIVCLIYIERLMEVARVPLVSSTWRPVFMCGLLLASKVWQDLSSWNIEFASVYPQFSLEAINRLEATFLRTVKWDLYISSSLYAKYYFALRSLLEKQDFRRRYNRMV 1074          
BLAST of mRNA_H-elongata_contig13257.2327.1 vs. uniprot
Match: A0A1E7FWS6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWS6_9STRA)

HSP 1 Score: 162 bits (409), Expect = 6.810e-45
Identity = 89/176 (50.57%), Postives = 117/176 (66.48%), Query Frame = 2
Query:   80 FSADQADVF-DDKYFAFRYTFMQPPI-MAIPGQLCVVKDTPVPATVE---EVYEFIKGLFVKTYLSSECSVICLIYIERLMQMARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKIKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGVIPFRRRYQAIL 592
            F A   D+F +D Y    Y      I MA PG +  ++   V   +    E+Y+F + LF    LSSECS++CLIY+ERLM++A+VPLL  TWRPI  CALLLASK+WQDL SWN EFS+ YP + ++SI+KLE+ FL  ++WDL +SSS YAKYYFALRS      FR+RY  ++
Sbjct:   98 FHASMRDIFNEDCYRTPTYKCHMARIPMARPGMVYGLRKVQVMYRIPSETEIYDFAQQLFQSVQLSSECSIVCLIYVERLMEIAKVPLLACTWRPIFMCALLLASKVWQDLSSWNIEFSSVYPQFSLESINKLELNFLRNVKWDLYISSSSYAKYYFALRSLVEKQDFRQRYNRMV 273          
BLAST of mRNA_H-elongata_contig13257.2327.1 vs. uniprot
Match: B8BQF5_THAPS (Cyclin N-terminal domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQF5_THAPS)

HSP 1 Score: 169 bits (428), Expect = 2.360e-44
Identity = 92/208 (44.23%), Postives = 139/208 (66.83%), Query Frame = 2
Query:    2 VAVVVYEHVQTCERQAKLEM--APEVTQFSADQADVFDDKYFA---FRYTFMQPPIMAIPG------QLCVVKDTPVPATVEEVYEFIKGLFVKTYLSSECSVICLIYIERLMQMARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKIKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGVIPFRRRYQAIL 592
            VA+++++H+   E + +  +    +   F +   D+F +  FA   ++ + ++ P MA PG      ++ VV +TP   + +E+YEF   LF K  LSSECS++CLIY+E+LM++A+VPL+ STWRPI  C LLLASK+WQDL SWN EF+  YP + + +I++LE++FL+ ++WDL +SSSLYAKYYFALRS      FR RY  ++
Sbjct:  641 VAIILHQHIVKIEHRFETGVRGVDDTGLFKSSMRDLFSEDNFATPRYKCSMVRVP-MARPGVVYSMRKIRVVYNTP---STDEIYEFAHQLFKKVQLSSECSIVCLIYVEKLMEVAKVPLVRSTWRPIFMCGLLLASKVWQDLSSWNIEFAGVYPQFSLDAINRLEVQFLKCIKWDLYISSSLYAKYYFALRSLLEKSGFRDRYNQMV 844          
BLAST of mRNA_H-elongata_contig13257.2327.1 vs. uniprot
Match: A0A7S2A727_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A727_9STRA)

HSP 1 Score: 168 bits (426), Expect = 2.680e-44
Identity = 95/203 (46.80%), Postives = 127/203 (62.56%), Query Frame = 2
Query:    2 VAVVVYEHVQTCE-RQAKLEMAPEVTQFSADQADVFDDKYFAF-RYTFMQPPI-MAIPGQLCVVKDTPVPATV---EEVYEFIKGLFVKTYLSSECSVICLIYIERLMQMARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKIKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGVIPFRRRYQAIL 592
            VA+++ +H+   E R  +++   E   F +   D F +  FA  RY    P + MA PG +C  +   V  T+    E+YEF   LF    LSSECS++CLIY+ERLM+M +VPLL  TWRPI  C LLLASK+WQDL SWN EF+  YP Y + +I++LE  FL  ++W+L +SSSLYAKYYFALRS      FR RY  ++
Sbjct:  525 VAMILQQHIVKIEDRFERMKGHDEKGLFLSSMKDAFSEDRFATPRYKCSMPRVPMARPGLICAQRQIRVKHTIPTSNEIYEFAHQLFKAVQLSSECSIVCLIYVERLMEMGKVPLLACTWRPIFMCGLLLASKVWQDLSSWNIEFALVYPQYSVDAINRLEKLFLSKVKWELYISSSLYAKYYFALRSLLEKQDFRNRYNRMV 727          
BLAST of mRNA_H-elongata_contig13257.2327.1 vs. uniprot
Match: A0A7S3K4U9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4U9_9STRA)

HSP 1 Score: 162 bits (411), Expect = 3.140e-44
Identity = 93/209 (44.50%), Postives = 139/209 (66.51%), Query Frame = 2
Query:    5 AVVVYEHVQTCERQA---KLEMAPEVTQ---FSADQADVFDD-KYFAFRYT--FMQPPIMAIPGQLCVVKDTPV----PATVEEVYEFIKGLFVKTYLSSECSVICLIYIERLMQMARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKIKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGVIPFRRRYQAIL 592
            A+VV++H+ TCE++     L+   E+++   F  +   +FD+ KY   +YT    + PI++ PG   + +  P+    P+  + +Y+F+  LF + +LSSECS++CLIYIERLM   +V LL++ WRPI+ C++LLASK+WQD  SWN EF+A YP+Y + +I+ LE +F+ AL WDL +S SLYAKYYFALRS S    FRR+Y   +
Sbjct:  161 ALVVHKHLTTCEQRELRRSLQAPNEISESRRFRKEANAMFDEAKYLEPKYTTTLYRLPILS-PGFHFISQRIPLEYLNPSNTD-IYDFLVELFERAHLSSECSIVCLIYIERLMDKGKVALLKNNWRPIVLCSMLLASKVWQDCASWNIEFAAIYPEYSLPAINLLERKFVSALGWDLYISQSLYAKYYFALRSLSEKSDFRRKYNIFI 367          
BLAST of mRNA_H-elongata_contig13257.2327.1 vs. uniprot
Match: A0A812XPB8_SYMMI (CCNY protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XPB8_SYMMI)

HSP 1 Score: 161 bits (407), Expect = 3.220e-44
Identity = 95/236 (40.25%), Postives = 147/236 (62.29%), Query Frame = 2
Query:    2 VAVVVYEHVQTCERQAKLEMAPEVTQ---FSADQADVFDDKYF---AFRYTFMQPPIMAIPGQLCV----VKDTPVPATVEEVYEFIKGLFVKTYLSSECSVICLIYIERLMQMARVPLLESTWRPIIFCALLLASKMWQDLGSWNGEFSAAYPDYKIKSIDKLEMRFLEALEWDLNVSSSLYAKYYFALRSKSGVIPFRRRYQAILLQV---ERDALLCDGVAKDKLLPSRIFPS 670
            V+VV+++H+ TCE+  K E  P++++   F   + + F +  F    + Y F +   +   G LC     ++ T    ++ EV+ F++ LF +  LS+ECS++CLIY+ERLM+ A VPL   TWRP++ C LLLASK+WQDL SWN E +  YP + +++I++LE  F   ++WDL +SSSLYAKYYFALRS +    FRR Y  ++LQ    E+ A+  + V K+ +L + +  S
Sbjct:  108 VSVVLHKHITTCEKSYK-EAPPDMSESGTFHTSKMETFSEDNFISPVYVYHFARSVPLTRVG-LCYGLRKLQSTYNHPSLGEVHIFLRTLFGEAQLSAECSIVCLIYVERLMEQANVPLTSKTWRPVVMCGLLLASKVWQDLSSWNIEIAQIYPQFTLQNINRLERTFCHHIKWDLYISSSLYAKYYFALRSLTEKSDFRRNYNTMVLQAPGAEQVAIRSENV-KETMLHTTLSKS 340          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13257.2327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH74_ECTSI1.030e-6055.80Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A6H5JJI4_9PHAE3.020e-5956.91Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A835YNR4_9STRA8.220e-4841.00Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A7S1G1W2_9STRA1.320e-4555.56Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S4J8M4_9STRA3.520e-4547.32Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1E7FWS6_9STRA6.810e-4550.57Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
B8BQF5_THAPS2.360e-4444.23Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A7S2A727_9STRA2.680e-4446.80Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S3K4U9_9STRA3.140e-4444.50Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A812XPB8_SYMMI3.220e-4440.25CCNY protein n=1 Tax=Symbiodinium microadriaticum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13257contigH-elongata_contig13257:6163..8335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score207.6
Seed ortholog evalue6.2e-51
Seed eggNOG ortholog2880.D7FH74
EggNOG free text desc.regulation of cyclin-dependent protein serine/threonine kinase activity
EggNOG OGsKOG1675@1,KOG1675@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size760
Cds size690
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13257.2327.1prot_H-elongata_contig13257.2327.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13257 6175..8277 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929786.9824853-UTR-H-elongata_contig13257:6162..61741622929786.9824853-UTR-H-elongata_contig13257:6162..6174Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13257 6163..6174 -
1691679157.3742478-UTR-H-elongata_contig13257:6162..61741691679157.3742478-UTR-H-elongata_contig13257:6162..6174Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13257 6163..6174 -
1622929787.1107597-UTR-H-elongata_contig13257:8277..83351622929787.1107597-UTR-H-elongata_contig13257:8277..8335Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13257 8278..8335 -
1691679157.435852-UTR-H-elongata_contig13257:8277..83351691679157.435852-UTR-H-elongata_contig13257:8277..8335Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13257 8278..8335 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929786.999339-CDS-H-elongata_contig13257:6174..62401622929786.999339-CDS-H-elongata_contig13257:6174..6240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13257 6175..6240 -
1691679157.3846989-CDS-H-elongata_contig13257:6174..62401691679157.3846989-CDS-H-elongata_contig13257:6174..6240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13257 6175..6240 -
1622929787.0152986-CDS-H-elongata_contig13257:6546..67691622929787.0152986-CDS-H-elongata_contig13257:6546..6769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13257 6547..6769 -
1691679157.3933756-CDS-H-elongata_contig13257:6546..67691691679157.3933756-CDS-H-elongata_contig13257:6546..6769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13257 6547..6769 -
1622929787.03002-CDS-H-elongata_contig13257:6901..69781622929787.03002-CDS-H-elongata_contig13257:6901..6978Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13257 6902..6978 -
1691679157.4042757-CDS-H-elongata_contig13257:6901..69781691679157.4042757-CDS-H-elongata_contig13257:6901..6978Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13257 6902..6978 -
1622929787.0437346-CDS-H-elongata_contig13257:7179..72841622929787.0437346-CDS-H-elongata_contig13257:7179..7284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13257 7180..7284 -
1691679157.412787-CDS-H-elongata_contig13257:7179..72841691679157.412787-CDS-H-elongata_contig13257:7179..7284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13257 7180..7284 -
1622929787.0572448-CDS-H-elongata_contig13257:7601..77491622929787.0572448-CDS-H-elongata_contig13257:7601..7749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13257 7602..7749 -
1691679157.4211636-CDS-H-elongata_contig13257:7601..77491691679157.4211636-CDS-H-elongata_contig13257:7601..7749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13257 7602..7749 -
1622929787.0931551-CDS-H-elongata_contig13257:8206..82771622929787.0931551-CDS-H-elongata_contig13257:8206..8277Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13257 8207..8277 -
1691679157.4282942-CDS-H-elongata_contig13257:8206..82771691679157.4282942-CDS-H-elongata_contig13257:8206..8277Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13257 8207..8277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13257.2327.1

>prot_H-elongata_contig13257.2327.1 ID=prot_H-elongata_contig13257.2327.1|Name=mRNA_H-elongata_contig13257.2327.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=230bp
MAPEVTQFSADQADVFDDKYFAFRYTFMQPPIMAIPGQLCVVKDTPVPAT
VEEVYEFIKGLFVKTYLSSECSVICLIYIERLMQMARVPLLESTWRPIIF
CALLLASKMWQDLGSWNGEFSAAYPDYKIKSIDKLEMRFLEALEWDLNVS
SSLYAKYYFALRSKSGVIPFRRRYQAILLQVERDALLCDGVAKDKLLPSR
IFPSTHSENDHPWSSRAQDGNAAMLSRSL*
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mRNA from alignment at H-elongata_contig13257:6163..8335-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13257.2327.1 ID=mRNA_H-elongata_contig13257.2327.1|Name=mRNA_H-elongata_contig13257.2327.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2173bp|location=Sequence derived from alignment at H-elongata_contig13257:6163..8335- (Himanthalia elongata Himel1 dioecious)
AGTCGCGGTAGTCGTTTATGAGCATGTACAGACATGCGAGAGACAGGCAA AACTCGAGATGGCGCCGGAAGTCACTCAGTTTAGCGCTGATCAGGCGGAC GTGTTCGACGACAAATATTTCGCCTTTAGGTGAAGAAACAAAGTGGCACA AGGATCCCCGAAGTACCATTTTATACCGTACCGTTCACTTGTTTTTTCGT TCAAGACGTATTACAGTATCTCAATTAGCACTGCGATACTGCAGTAATCT CTACTGTCGTCATGAGTGCGGCATATATGCGCGCAAAATCGCATACGGAA GCAGATGCGTTCACGTTAGTTAATTGTTTCAGTAAGGATCGCTCAAAGAG AGTGTAGGGAGAGAAGTCGTATGTAGGAGATACTGATTGAGGTTTGTGTG CTTCTCCGACAGCTCTAGAGGCTCGAGCCGTGTATGACCCACATACCCTG CAGGTTTCTCGTCTTTTTTGTTATCCGGCGCAAATGTGAGCTTGCCCCCC CCCTCAATAGAGCGAGTGGCAGCACGATCTGTGTCGACGAGGACAAACCG TGTTCCAACCCGACTTTGCATGACACGTGCGAGCAGGTATACGTTTATGC AGCCTCCGATAATGGCCATTCCCGGTCAATTATGCGTGGTGAAGGATACG CCGGTACCTGCTACAGTCGAGGAGGTGTACGAGTTCATAAAGGGTCTCTT CGTGAAGACTTACCTCAGCAGCGAGTGCTCCGTGGTACGTTATACTATAT ACACTATAATATATATTTTCTTCGTTTACTACTAAATGAGGGCAGGCAGC GAAGGGGTTCTCCCCGGGTGAATTTAGTAAATATACCCTTGCTTGGATTG CTATGATCTGTAATACGTCGTGTCAAGGCACAGGGCAAATATGCTTATCA TACACCTTGTACATCTGTAGCATTTTCGTTGTGTTTCCTTCATTTTAATA CTCGATGGAGGACGAGTGACAAAGGAGACATACCTTTAACCTAAATGACT GCGTTCTCCATAACCCGATTGGCGTCCCGCTTCCCTTGGCTGGTCATTCA GATCTGCCTAATTTATATCGAGCGGCTCATGCAAATGGCGCGCGTGCCGC TGCTCGAAAGCACGTGGAGGCCAATCATTTTCTGCGCCCTTCTCCTAGCT TCAAAGGTGCGAACCCTACTACTAAACACATCAAGGCAAGGGGAAACGTA TAAAGTGATTTTCCGGTTAAAATGTGAAACAAGGGGTCATATTATCGTCG TGCGTATGAGCCTGACGTTTTGTTACACCAATGAAAGGTGGTGTTTCCCG ATAGTTCACAGAGAGAGACTCTAACCAACAGCTGCGCGCGTTGGTTTGTT CCTCCAGATGTGGCAGGACCTCGGCTCTTGGAACGGGGAGTTCTCCGCCG CTTACCCCGACTACAAAATCAAGAGTATCGACAAGTGAGCTGTTGTCTGG AGTCAGTCATGGGTTGGATAGGGGCTACAATGTGTTTGATTACTCTCTCT CTGTCGTGTTTCCTGCGCTGATTTTCATAGTTATTCCCATCCCCTAAATC ATCGCGCTGGTATCAGGCTGGAGATGCGATTCCTCGAAGCGCTAGAGTGG GACTTAAATGTCTCAAGTAGCCTCTATGCGAAGTACTATTTTGCTCTGAG GTCCAAGTCTGGGGTAATCCCTTTTCGAAGGAGATACCAAGCAATATTAT TGCAGGTGGAGCGCGACGCTTTGCTATGCGACGGCGTGGCCAAGGACAAG TTGCTTCCCTCTCGGATCTTCCCAAGCACCCACTCAGAGGTGTAGTGGTA ACGAGAGCAGTTCAAGGAATTGGTACGGTAAAGGGGGGGATAAACACCGA GTGCACCCCGCCGGCTACGCGAATGCACCGTACACCTGAAGCATACCATG TATACGTGCGGCTGCCAGGTACATCCGCCGGCGATTTACCTCCCTAGAAT TTTGGAACATTGACGGTTTTCCCCTTCCACCTTGTCGCATGACCTCTTTA TTTAATCTCGTTTGGGTCCGTCCCATCCTGTTCTGGTCTGCTGCCTATCG TCCTATTCCACCGCATGCAACTTCGTCGTACGATGGGGGGGATAGAACGA TCATCCCTGGTCCAGCAGAGCTCAAGATGGGAATGCTGCGATGCTCTCCA GAAGTCTCTGAGAGTTTTCCCCA
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Coding sequence (CDS) from alignment at H-elongata_contig13257:6163..8335-

>mRNA_H-elongata_contig13257.2327.1 ID=mRNA_H-elongata_contig13257.2327.1|Name=mRNA_H-elongata_contig13257.2327.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1380bp|location=Sequence derived from alignment at H-elongata_contig13257:6163..8335- (Himanthalia elongata Himel1 dioecious)
ATGGCGCCGGAAGTCACTCAGTTTAGCGCTGATCAGGCGGACGTGTTCGA
CGACAAATATTTCGCCTTTAGATGGCGCCGGAAGTCACTCAGTTTAGCGC
TGATCAGGCGGACGTGTTCGACGACAAATATTTCGCCTTTAGGTATACGT
TTATGCAGCCTCCGATAATGGCCATTCCCGGTCAATTATGCGTGGTGAAG
GATACGCCGGTACCTGCTACAGTCGAGGAGGTGTACGAGTTCATAAAGGG
TCTCTTCGTGAAGACTTACCTCAGCAGCGAGTGCTCCGTGGTATACGTTT
ATGCAGCCTCCGATAATGGCCATTCCCGGTCAATTATGCGTGGTGAAGGA
TACGCCGGTACCTGCTACAGTCGAGGAGGTGTACGAGTTCATAAAGGGTC
TCTTCGTGAAGACTTACCTCAGCAGCGAGTGCTCCGTGATCTGCCTAATT
TATATCGAGCGGCTCATGCAAATGGCGCGCGTGCCGCTGCTCGAAAGCAC
GTGGAGGCCAATCATTTTCTGCGCCCTTCTCCTAGCTTCAAAGATCTGCC
TAATTTATATCGAGCGGCTCATGCAAATGGCGCGCGTGCCGCTGCTCGAA
AGCACGTGGAGGCCAATCATTTTCTGCGCCCTTCTCCTAGCTTCAAAGAT
GTGGCAGGACCTCGGCTCTTGGAACGGGGAGTTCTCCGCCGCTTACCCCG
ACTACAAAATCAAGAGTATCGACAAATGTGGCAGGACCTCGGCTCTTGGA
ACGGGGAGTTCTCCGCCGCTTACCCCGACTACAAAATCAAGAGTATCGAC
AAGCTGGAGATGCGATTCCTCGAAGCGCTAGAGTGGGACTTAAATGTCTC
AAGTAGCCTCTATGCGAAGTACTATTTTGCTCTGAGGTCCAAGTCTGGGG
TAATCCCTTTTCGAAGGAGATACCAAGCAATATTATTGCAGGTGGAGCGC
GACGCTTTGCTATGCGACGGCGTGGCCAAGGACAAGTTGCTTCCCTCTCG
GATCTTCCCAAGCACCCACTCAGAGGCTGGAGATGCGATTCCTCGAAGCG
CTAGAGTGGGACTTAAATGTCTCAAGTAGCCTCTATGCGAAGTACTATTT
TGCTCTGAGGTCCAAGTCTGGGGTAATCCCTTTTCGAAGGAGATACCAAG
CAATATTATTGCAGGTGGAGCGCGACGCTTTGCTATGCGACGGCGTGGCC
AAGGACAAGTTGCTTCCCTCTCGGATCTTCCCAAGCACCCACTCAGAGAA
CGATCATCCCTGGTCCAGCAGAGCTCAAGATGGGAATGCTGCGATGCTCT
CCAGAAGTCTCTGAAACGATCATCCCTGGTCCAGCAGAGCTCAAGATGGG
AATGCTGCGATGCTCTCCAGAAGTCTCTGA
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