mRNA_H-elongata_contig13248.2323.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13248.2323.1
Unique NamemRNA_H-elongata_contig13248.2323.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13248.2323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13248contigH-elongata_contig13248:387..928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size542
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13248.2323.1prot_H-elongata_contig13248.2323.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13248 461..769 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929786.3283803-UTR-H-elongata_contig13248:386..4601622929786.3283803-UTR-H-elongata_contig13248:386..460Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13248 387..460 +
1691679157.1427453-UTR-H-elongata_contig13248:386..4601691679157.1427453-UTR-H-elongata_contig13248:386..460Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13248 387..460 +
1622929786.359283-UTR-H-elongata_contig13248:769..9281622929786.359283-UTR-H-elongata_contig13248:769..928Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13248 770..928 +
1691679157.162472-UTR-H-elongata_contig13248:769..9281691679157.162472-UTR-H-elongata_contig13248:769..928Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13248 770..928 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929786.3397954-CDS-H-elongata_contig13248:460..7691622929786.3397954-CDS-H-elongata_contig13248:460..769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13248 461..769 +
1691679157.1528025-CDS-H-elongata_contig13248:460..7691691679157.1528025-CDS-H-elongata_contig13248:460..769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13248 461..769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13248.2323.1

>prot_H-elongata_contig13248.2323.1 ID=prot_H-elongata_contig13248.2323.1|Name=mRNA_H-elongata_contig13248.2323.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MGVVLGSSGRGISRVAHPSVAAACMEGVYLGGLGGGGINQVGATVCMKFS
RCRFDRHPISDSAVVYQRIVWDGHVCVCVCVCVLSSHFIQDIRLVDAPAG
VG*
back to top

mRNA from alignment at H-elongata_contig13248:387..928+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13248.2323.1 ID=mRNA_H-elongata_contig13248.2323.1|Name=mRNA_H-elongata_contig13248.2323.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=542bp|location=Sequence derived from alignment at H-elongata_contig13248:387..928+ (Himanthalia elongata Himel1 dioecious)
TGAGTACGTAGGAAGGAGATGATTTTGATCGAGAAGCATTTTGCAGTGTC
GTTCCATTGTTTATGTCGTGACTGATGGGCGTAGTACTAGGAAGCAGTGG
AAGAGGTATATCGCGTGTGGCGCATCCGAGCGTTGCTGCTGCGTGCATGG
AGGGTGTGTATCTCGGGGGGTTGGGGGGGGGCGGCATTAACCAAGTTGGT
GCTACGGTCTGCATGAAGTTCTCTAGATGCCGATTCGACAGACATCCCAT
AAGTGACAGTGCCGTAGTGTACCAGAGGATCGTCTGGGATGGGCATGTGT
GTGTGTGTGTGTGTGTGTGTGTATTGTCATCCCATTTTATTCAGGATATT
AGACTTGTGGATGCACCAGCCGGGGTAGGGTAGGGTCACACAGGAGGAAA
GGTTCAGCCGTCATAGTCCCTTTCCCTCGTCGACCGTGAAGTATACTGTA
TACAGTATGTCGAATTTTGTGTGCCCACGAAATAATCGTTCTCCTCTTGT
TGGGCATGATGTCAAAGGAAAAATCCGAGTTCAAGTGACTGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig13248:387..928+

>mRNA_H-elongata_contig13248.2323.1 ID=mRNA_H-elongata_contig13248.2323.1|Name=mRNA_H-elongata_contig13248.2323.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig13248:387..928+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGTAGTACTAGGAAGCAGTGGAAGAGGTATATCGCGTGTGGCGCA
TCCGAGCGTTGCTGCTGCGTGCATGGAGGGTGTGTATCTCGGGGGGTTGG
GGGGGGGCGGCATTAACCAAGTTGGTGCTACGGTCTGCATGAAGTTCTCT
AGATGCCGATTCGACAGACATCCCATAAGTGACAGTGCCGTAGTGTACCA
GAGGATCGTCTGGGATGGGCATGTGTGTGTGTGTGTGTGTGTGTGTGTAT
TGTCATCCCATTTTATTCAGGATATTAGACTTGTGGATGCACCAGCCGGG
GTAGGGTAGATGGGCGTAGTACTAGGAAGCAGTGGAAGAGGTATATCGCG
TGTGGCGCATCCGAGCGTTGCTGCTGCGTGCATGGAGGGTGTGTATCTCG
GGGGGTTGGGGGGGGGCGGCATTAACCAAGTTGGTGCTACGGTCTGCATG
AAGTTCTCTAGATGCCGATTCGACAGACATCCCATAAGTGACAGTGCCGT
AGTGTACCAGAGGATCGTCTGGGATGGGCATGTGTGTGTGTGTGTGTGTG
TGTGTGTATTGTCATCCCATTTTATTCAGGATATTAGACTTGTGGATGCA
CCAGCCGGGGTAGGGTAG
back to top