mRNA_H-elongata_contig132444.2321.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig132444.2321.1 vs. uniprot
Match: D7FPY6_ECTSI (V-type proton ATPase subunit a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPY6_ECTSI) HSP 1 Score: 310 bits (794), Expect = 2.160e-96 Identity = 163/225 (72.44%), Postives = 183/225 (81.33%), Query Frame = 1
Query: 4 HQLLFFNSMKMKTSVIIGVAQMTFGVCLKAMNAVYFKEGLDFFFEFIPMIIFVLALFGYMVVLIFMKWSINWEYRMFTATCFDGFTPLDIVCNDSSTTAEMCPLDYGGTGDGCQPPNLITSLINIALSPGSVDEPMYAQQAT--TILLLLAFVSVPFLLLGKPLMIRSRMKKHA-REDSFSSQSQLMGGEHKA---------------HAHEESHDFSEIVIHQV 624
++LLFFNSMKMKTSVI+GV QMTFGV LKAMNA+YFKE LDFF+EFIPMIIFVL+LFGYM+VLIFMKWSI+W+YRM+TATCFDG TP ++ C+ STTA+MCPLDYGG+GDGCQPPNLITSLINIALSPG+VDEPMYA Q + TILLLLA S+P LLL KPL IRSRMKK A R DSFSS+SQLM GEH + H E HDFSEIVIHQ
Sbjct: 638 NELLFFNSMKMKTSVILGVTQMTFGVVLKAMNALYFKESLDFFYEFIPMIIFVLSLFGYMIVLIFMKWSIDWDYRMYTATCFDGLTPQNVTCDSDSTTADMCPLDYGGSGDGCQPPNLITSLINIALSPGTVDEPMYAGQTSVQTILLLLALGSIPVLLLAKPLTIRSRMKKAAARHDSFSSESQLMAGEHNSSDKVDNGGHGAAGGDHGGHEEHDFSEIVIHQA 862
BLAST of mRNA_H-elongata_contig132444.2321.1 vs. uniprot
Match: A0A7S2BXY4_9STRA (V-type proton ATPase subunit a (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BXY4_9STRA) HSP 1 Score: 226 bits (576), Expect = 1.100e-71 Identity = 127/227 (55.95%), Postives = 154/227 (67.84%), Query Frame = 1
Query: 16 FFNSMKMKTSVIIGVAQMTFGVCLKAMNAVYFKEGLDFFFEFIPMIIFVLALFGYMVVLIFMKWSINWEYRMFTATCFDGFTPLDIVCNDSSTTAEMCPLDYGGTGDGCQPPNLITSLINIALSPGSVDEPMYAQQA--TTILLLLAFVSVPFLLLGKPLMIRSRMK-KHAREDSFSSQSQLM----------------GGEH-------KAHAHEESHDFSEIVIH 618
FFNSMKMK SVIIG+ QMT G+CLK +NA+YF+E LDFFFEFIPM+IF +A FGYMVVLIFMKW I+W+ RM++ATC + + TTA+MCPLDYGG+GDGCQPPNLIT+L+N+AL PG+VDEP+Y QA +LLLLA VP +LL KPLMIRSRM +H + S++ L+ GG H EE HDFSEIVIH
Sbjct: 1 FFNSMKMKLSVIIGIIQMTVGICLKGLNALYFEEQLDFFFEFIPMLIFDMAFFGYMVVLIFMKWMIDWDARMYSATCNSDHDLYPKCLDGTYTTADMCPLDYGGSGDGCQPPNLITTLMNMALMPGTVDEPLYPGQAGIQVVLLLLAVACVPVILLAKPLMIRSRMNAEHGNANGSFSENPLIDEKDGYGVVVDHGNQGGGGHGEXXXXXXXXXXEEEHDFSEIVIH 227
BLAST of mRNA_H-elongata_contig132444.2321.1 vs. uniprot
Match: A0A835ZAQ4_9STRA (V-type proton ATPase subunit a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ4_9STRA) HSP 1 Score: 243 bits (619), Expect = 1.950e-71 Identity = 133/234 (56.84%), Postives = 165/234 (70.51%), Query Frame = 1
Query: 4 HQLLFFNSMKMKTSVIIGVAQMTFGVCLKAMNAVYFKEGLDFFFEFIPMIIFVLALFGYMVVLIFMKWSINWEYRMFTATCFD-GFTPLDIVC---------NDSSTT----AEMCPLDYGGTGDGCQPPNLITSLINIALSPGSVDEPMYAQQA--TTILLLLAFVSVPFLLLGKPLMIRS-RMKKHAREDSFSSQSQLM----------GGEHKAHAHEESHDFSEIVIHQV 624
++LLF+NSMKMK SVI+G+ QMT G+ LKAMNA YFK+ LDF+ EF+PMIIF ALFGYMV+LIFMKW INW+ RM+ ATC D GFTP C N SS + AEMCPL+YGGTGDGCQPPNLIT+LINIAL+PG+VD+PMY Q T LLL+AF +P LL GKP M++ ++H R+DSF+S S+L+ G H A H++SH F E++IHQ
Sbjct: 587 NELLFYNSMKMKMSVILGILQMTMGIILKAMNAKYFKQPLDFYLEFVPMIIFDGALFGYMVLLIFMKWGINWQERMYMATCLDTGFTPQGDACVLGVSTTGENLSSASKYVAAEMCPLNYGGTGDGCQPPNLITTLINIALAPGTVDDPMYKGQGGVQTFLLLVAFFCIPVLLFGKPYMLKKMETQRHTRQDSFASDSELVPGAGAHANNAGDAHAAGGHDDSHSFGEVIIHQA 820
BLAST of mRNA_H-elongata_contig132444.2321.1 vs. uniprot
Match: A0A7S2FQ72_9STRA (V-type proton ATPase subunit a n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FQ72_9STRA) HSP 1 Score: 230 bits (586), Expect = 6.620e-71 Identity = 132/226 (58.41%), Postives = 159/226 (70.35%), Query Frame = 1
Query: 4 HQLLFFNSMKMKTSVIIGVAQMTFGVCLKAMNAVYFKEGLDFFFEFIPMIIFVLALFGYMVVLIFMKWSINWEYRMFTATCF-DGFTPLDIVCN-DSSTTAEMCPLDYGGTGDGCQPPNLITSLINIALSPGSVDEPMYAQQAT--TILLLLAFVSVPFLLLGKPLMIRSRMKKHAREDSFSSQSQLMGGE-----HKAHAHE----------ESHDFSEIVIHQV 624
++LLFFNSMKMK+SVIIGV QM G+CL+ MNAVYF E LDF+FEF+PM +F LFGYM+V+IF+KWSI+W++RM+ TC D D N D A++CPLDYGGTGDGCQPPNLIT+LINIAL+PGSVDEP+YA QAT T++LL AF SVP LLLGKP I +MK+ + +S S + GGE HK E E HDFSEIVIHQ
Sbjct: 69 NELLFFNSMKMKSSVIIGVMQMCVGICLRGMNAVYFGEWLDFYFEFLPMCVFAFGLFGYMIVVIFVKWSIDWQHRMYQGTCNEDNAHWPDCFDNPDDYELADLCPLDYGGTGDGCQPPNLITTLINIALAPGSVDEPLYAGQATVQTVILLAAFGSVPVLLLGKPYFISRQMKQ--KHESDSRVALTSGGEFGDEYHKGLEEEGGHGEGGDDHEEHDFSEIVIHQA 292
BLAST of mRNA_H-elongata_contig132444.2321.1 vs. uniprot
Match: A0A6H5L5K7_9PHAE (V-type proton ATPase subunit a n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K7_9PHAE) HSP 1 Score: 216 bits (550), Expect = 3.180e-67 Identity = 116/168 (69.05%), Postives = 129/168 (76.79%), Query Frame = 1
Query: 178 YMVVLIFMKWSINWEYRMFTATCFDGFTPLDIVCNDSSTTAEMCPLDYGGTGDGCQPPNLITSLINIALSPGSVDEPMYAQQAT--TILLLLAFVSVPFLLLGKPLMIRSRMKKHA-REDSFSSQSQLMGGEHKAH----------------AHEESHDFSEIVIHQV 624
YM++LIFMKWSI+W+YRMFTATCFDG TP ++ C+ STTA+MCPLDYGG+GDGCQPPNLITSLINIALSPG VDEPMYA Q + TILLLLA S+P LLL KPL IRSRMKK A R DSFSS+SQLM GEHK+ HEE HDFSEIVIHQ
Sbjct: 4 YMILLIFMKWSIDWDYRMFTATCFDGLTPQNVTCDSDSTTADMCPLDYGGSGDGCQPPNLITSLINIALSPGVVDEPMYAGQTSVQTILLLLALGSIPVLLLAKPLTIRSRMKKAAARHDSFSSESQLMAGEHKSSDKVENGGHGAAGGDSGGHEE-HDFSEIVIHQA 170
BLAST of mRNA_H-elongata_contig132444.2321.1 vs. uniprot
Match: A0A7S2G7U3_9STRA (V-type proton ATPase subunit a n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G7U3_9STRA) HSP 1 Score: 229 bits (585), Expect = 8.000e-67 Identity = 119/211 (56.40%), Postives = 156/211 (73.93%), Query Frame = 1
Query: 1 SHQLLFFNSMKMKTSVIIGVAQMTFGVCLKAMNAVYFKEGLDFFFEFIPMIIFVLALFGYMVVLIFMKWSINWEYRMFTATCFDGFTPLDIVCNDSSTTAEMCPLDYGGTGDGCQPPNLITSLINIALSPGSVDEPMYAQQA--TTILLLLAFVSVPFLLLGKPLMIRSRMKKHAREDSFSSQSQLMGGEH-KAHAHEESHDFSEIVIHQV 624
+++L+FFNSMKMK SVI+G+ QMT G+ LK +NA++F E LDFFFEFIPM+IF +A FGYMV+LIFMKW+INW+ RM++ATC + + + + TTA++CPLDYGG+GDGCQPPNLIT+L+N+AL PG+VDEP+Y QA LLL+A VP +L+ KPL +R+ SFS Q + +H KA HEE HDF+EIVIHQ
Sbjct: 564 TNELIFFNSMKMKISVILGITQMTLGIILKGINALFFSESLDFFFEFIPMLIFDIAFFGYMVLLIFMKWTINWDERMYSATCTEDHSLYPDCLDGTYTTADLCPLDYGGSGDGCQPPNLITTLMNMALQPGTVDEPLYEGQAGIQVALLLIAVACVPVILVAKPLFLRNAHSDQGGPGSFSEQQLIDEDKHDKAGGHEE-HDFTEIVIHQA 773
BLAST of mRNA_H-elongata_contig132444.2321.1 vs. uniprot
Match: A0A7S3DTC9_9STRA (V-type proton ATPase subunit a n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DTC9_9STRA) HSP 1 Score: 215 bits (547), Expect = 1.480e-65 Identity = 118/233 (50.64%), Postives = 145/233 (62.23%), Query Frame = 1
Query: 1 SHQLLFFNSMKMKTSVIIGVAQMTFGVCLKAMNAVYFKEGLDFFFEFIPMIIFVLALFGYMVVLIFMKWSINWEYRMFTATCFD-----------------------GFTPLDIVCNDSSTTAEMCPLDYGGTGDGCQPPNLITSLINIALSPGSVDEPMYAQQAT--TILLLLAFVSVPFLLLGKPLMIRSRMKKHAREDSFSSQSQLMGGEHKAHAHEESHDFSEIVIHQV 624
S++LLFFNS KMK SV+ G+ QM G CLK +NA+YFKE LDF +EFIPM++F ++F YMV LIF KW+INW RM +ATC + G TP +VC+ S TA+ CPLD+GG GDGCQPPNLIT+LINIAL+PG VDEPMY Q ILLL AFVSVP LLL KP + + + S ++ G+ H+E H F EIVIHQ
Sbjct: 21 SNELLFFNSFKMKLSVVFGIIQMFSGTCLKGLNAIYFKEPLDFLYEFIPMVVFAASMFIYMVFLIFYKWAINWHSRMLSATCVNPYSDTWGSSAYDGEWVQCNDNGYGCTPWGLVCDGSENTADKCPLDFGGDGDGCQPPNLITTLINIALNPGVVDEPMYGGQGQIQNILLLCAFVSVPVLLLAKPYFLSKQQHAPIQHHSDDAEDGQAAGDD----HDEEHGFGEIVIHQA 249
BLAST of mRNA_H-elongata_contig132444.2321.1 vs. uniprot
Match: A0A1E7EP61_9STRA (V-type proton ATPase subunit a n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EP61_9STRA) HSP 1 Score: 216 bits (551), Expect = 5.220e-62 Identity = 125/236 (52.97%), Postives = 146/236 (61.86%), Query Frame = 1
Query: 1 SHQLLFFNSMKMKTSVIIGVAQMTFGVCLKAMNAVYFKEGLDFFFEFIPMIIFVLALFGYMVVLIFMKWSINWEYRMFTATCFDGF-----------------------TPLDIVCNDSS-TTAEMCPLDYGGTGDGCQPPNLITSLINIALSPGSVDEPMYAQQAT--TILLLLAFVSVPFLLLGKPLMIRSRMKK--HAREDSFSSQSQLMGGEHKAHAHEESHDFSEIVIHQV 624
S+QLLFFNS KMK SV+ G++QM G CLK +NA+YF E LD FFE IPM+IF +LF YMV+LIFMKWSI+W YRM ATC+D TP C S TTA+ CP DYGG+GDGCQPPNLITSLINIALSPG+VDEPMY QA ILL A SVP LL+ KP I ++ + H+ S+ G+H H E HDF EIVIHQ
Sbjct: 537 SNQLLFFNSFKMKLSVVFGISQMFMGTCLKGINAIYFNEKLDLFFEVIPMMIFSSSLFLYMVLLIFMKWSIDWNYRMSLATCYDPTGDEWLSDWTMCDTSTSDDSNGMCTPWGYACTSSGDTTADKCPFDYGGSGDGCQPPNLITSLINIALSPGTVDEPMYKGQAPIQNILLFAAVASVPVLLIAKPYFISQQVHEAPHSVVVIASTDDDEXEGQHGEHEEVEEHDFGEIVIHQA 772
BLAST of mRNA_H-elongata_contig132444.2321.1 vs. uniprot
Match: A0A6V1TGH2_HETAK (V-type proton ATPase subunit a n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TGH2_HETAK) HSP 1 Score: 214 bits (545), Expect = 1.490e-61 Identity = 116/213 (54.46%), Postives = 149/213 (69.95%), Query Frame = 1
Query: 1 SHQLLFFNSMKMKTSVIIGVAQMTFGVCLKAMNAVYFKEGLDFFFEFIPMIIFVLALFGYMVVLIFMKWSINWEYRMFTATCFDGFT---PLDIVCNDSSTTAEMCPLDYGGTGDGCQPPNLITSLINIALSPGSVDEPMYAQQATT--ILLLLAFVSVPFLLLGKPLMIRSRMKKHA----REDSFSSQSQLMGGE-HKAHAHEESHDFSEI 609
+++LLFFNSMKMKTSVIIG+ MTFG+CL+ +N +YFK+ + F+ EF+PM+IF L++FGYMV+LIF+KWSINWE RM TC D T C+ A +C LDYGGTGDGCQPPNLIT+LI I LSPGSV+EPM+A QA+ I+LL+ F++VP LLLG+PL + K H R DSF+S S L E +K H + H S +
Sbjct: 541 NNELLFFNSMKMKTSVIIGIIHMTFGICLRGLNCIYFKDKIGFWLEFVPMLIFDLSMFGYMVLLIFIKWSINWEDRMLMGTCNDDGTNAYDASYSCDPDGDVASVCFLDYGGTGDGCQPPNLITTLIGIVLSPGSVEEPMFAGQASVQVIVLLIIFITVPVLLLGRPLAEKFAAKSHGHGAPRADSFASDSPLADPEANKGHGGHDEHGESPV 753
BLAST of mRNA_H-elongata_contig132444.2321.1 vs. uniprot
Match: A0A7S2IBP9_9STRA (V-type proton ATPase subunit a n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IBP9_9STRA) HSP 1 Score: 211 bits (538), Expect = 3.280e-61 Identity = 118/231 (51.08%), Postives = 146/231 (63.20%), Query Frame = 1
Query: 1 SHQLLFFNSMKMKTSVIIGVAQMTFGVCLKAMNAVYFKEGLDFFFEFIPMIIFVLALFGYMVVLIFMKWSINWEYRMFTATCFD---------------------GFTPLDIVCNDSSTTAEMCPLDYGGTGDGCQPPNLITSLINIALSPGSVDEPMYAQQATT--ILLLLAFVSVPFLLLGKPLMIRSRMKKHAREDSFSSQSQLMGGEHKAHAHEESHDFSEIVIHQV 624
S++LLFFNS KMK SVI G+ QM G CLK +NAVYF + LDFFFEF+PM+ F +LF YM+VLI+MKWSINW RM +ATC D TP VC + +TA+ CPL++GG+GDGCQPPNLIT+LINIAL PG VDEPMY Q +T +LL +A +SVP LLL KP + +M+ +S Q + EH+ E H F EIVIHQ
Sbjct: 343 SNELLFFNSFKMKLSVIFGIVQMFAGTCLKGINAVYFGQKLDFFFEFLPMVAFAASLFLYMIVLIYMKWSINWNSRMLSATCLDPNGEGWESPDYEGEWKPCEGDACTPWGHVCESNDSTADKCPLNFGGSGDGCQPPNLITTLINIALQPGVVDEPMYDNQGSTQNVLLFIALISVPVLLLAKPYFLSKQMEHDHVVESAVEQEE--DDEHEG----EDHGFGEIVIHQA 567 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132444.2321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig132444.2321.1 >prot_H-elongata_contig132444.2321.1 ID=prot_H-elongata_contig132444.2321.1|Name=mRNA_H-elongata_contig132444.2321.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=203bp MKMKTSVIIGVAQMTFGVCLKAMNAVYFKEGLDFFFEFIPMIIFVLALFGback to top mRNA from alignment at H-elongata_contig132444:191..1570+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig132444.2321.1 ID=mRNA_H-elongata_contig132444.2321.1|Name=mRNA_H-elongata_contig132444.2321.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1380bp|location=Sequence derived from alignment at H-elongata_contig132444:191..1570+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig132444:191..1570+ >mRNA_H-elongata_contig132444.2321.1 ID=mRNA_H-elongata_contig132444.2321.1|Name=mRNA_H-elongata_contig132444.2321.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1218bp|location=Sequence derived from alignment at H-elongata_contig132444:191..1570+ (Himanthalia elongata Himel1 dioecious)back to top |