mRNA_H-elongata_contig132280.2316.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132280.2316.1
Unique NamemRNA_H-elongata_contig132280.2316.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig132280.2316.1 vs. uniprot
Match: D8LRG1_ECTSI (HNH endonuclease family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG1_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 7.200e-22
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    4 KKFNLNGGLDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFMGKVVVVA 153
            +  N NGG+DSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVF  KVVV+A
Sbjct:  127 RTVNFNGGIDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFSEKVVVLA 176
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BLAST of mRNA_H-elongata_contig132280.2316.1 vs. uniprot
Match: A0A2S6RF48_9PROT (HNHc domain-containing protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2S6RF48_9PROT)

HSP 1 Score: 76.6 bits (187), Expect = 4.070e-16
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:   16 LNGGLDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFMGKVVVVA 153
            ++G L+S PCLVLNADYQPLSY PLSLWGWQ+ IKAVF+ +V +VA
Sbjct:    1 MSGSLNSSPCLVLNADYQPLSYFPLSLWGWQETIKAVFLERVNIVA 46
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BLAST of mRNA_H-elongata_contig132280.2316.1 vs. uniprot
Match: A0A1Z8VVK9_9PROT (HNH endonuclease n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1Z8VVK9_9PROT)

HSP 1 Score: 75.5 bits (184), Expect = 1.120e-15
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   28 LDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFMGKVVVVA 153
            LD+ PCLVLNADYQPLSY PLSLWGWQD IKAVF+ +V +VA
Sbjct:    4 LDNSPCLVLNADYQPLSYFPLSLWGWQDTIKAVFLERVNIVA 45
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BLAST of mRNA_H-elongata_contig132280.2316.1 vs. uniprot
Match: A0A6I7P8K3_9PROT (HNH endonuclease n=1 Tax=Geminicoccaceae bacterium TaxID=2448052 RepID=A0A6I7P8K3_9PROT)

HSP 1 Score: 75.1 bits (183), Expect = 1.810e-15
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   28 LDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFMGKVVVVA 153
            LD+CP LVLNADYQPLSY PLSLWGWQD +KA+F+ +V VV+
Sbjct:   12 LDACPALVLNADYQPLSYFPLSLWGWQDAVKAMFLDRVAVVS 53
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BLAST of mRNA_H-elongata_contig132280.2316.1 vs. uniprot
Match: A0A1Z9FHU5_9RICK (HNH endonuclease n=1 Tax=Rickettsiales bacterium TMED131 TaxID=1986867 RepID=A0A1Z9FHU5_9RICK)

HSP 1 Score: 74.3 bits (181), Expect = 3.140e-15
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   28 LDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFMGKVVVVA 153
            L++ PCLVLNADYQPLSY PLSLWGWQD IKAVF+ +V +VA
Sbjct:    4 LENSPCLVLNADYQPLSYFPLSLWGWQDTIKAVFLDRVNIVA 45
[Close]
BLAST of mRNA_H-elongata_contig132280.2316.1 vs. uniprot
Match: A0A2D6G2E5_9PROT (HNH endonuclease n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6G2E5_9PROT)

HSP 1 Score: 74.3 bits (181), Expect = 3.200e-15
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:   16 LNGGLDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFMGKVVVVA 153
            +   LD+CP LVLNAD++PL+Y PLSLWGWQD +KAVF+G+V VV+
Sbjct:    1 MTAALDNCPALVLNADFRPLNYFPLSLWGWQDAVKAVFLGRVNVVS 46
[Close]
BLAST of mRNA_H-elongata_contig132280.2316.1 vs. uniprot
Match: A0A2E4X6Q5_9PROT (HNH endonuclease (Fragment) n=1 Tax=Pelagibacterales bacterium TaxID=2026776 RepID=A0A2E4X6Q5_9PROT)

HSP 1 Score: 70.5 bits (171), Expect = 3.710e-15
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   16 LNGGLDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFMGKVVVVA 153
            ++G L+S PCLVLNADYQPLSY PLS W W+D +KAVF+ +V VV+
Sbjct:    1 MSGSLNSSPCLVLNADYQPLSYFPLSTWVWKDALKAVFLNRVNVVS 46
[Close]
BLAST of mRNA_H-elongata_contig132280.2316.1 vs. uniprot
Match: A0A7C1YT19_9SPHN (HNH endonuclease (Fragment) n=1 Tax=Sphingomonadales bacterium TaxID=1978525 RepID=A0A7C1YT19_9SPHN)

HSP 1 Score: 71.6 bits (174), Expect = 4.050e-15
Identity = 29/41 (70.73%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:   28 LDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFMGKVVVV 150
            LD+CP LVLNAD++PLSY PLSLW WQDVIKAV++ +V+V+
Sbjct:   13 LDACPALVLNADFKPLSYFPLSLWSWQDVIKAVYLERVIVI 53
[Close]
BLAST of mRNA_H-elongata_contig132280.2316.1 vs. uniprot
Match: A0A849EEI8_9HYPH (HNH endonuclease n=1 Tax=Anderseniella sp. TaxID=1872568 RepID=A0A849EEI8_9HYPH)

HSP 1 Score: 73.6 bits (179), Expect = 6.110e-15
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:   31 DSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFMGKVVVVA 153
            DSCP LVLNADY+PLSY PLSLWGWQDV+KAVF+ +V +V+
Sbjct:    8 DSCPALVLNADYRPLSYYPLSLWGWQDVVKAVFLERVHIVS 48
[Close]
BLAST of mRNA_H-elongata_contig132280.2316.1 vs. uniprot
Match: A0A2F0AJA0_9PROT (HNH endonuclease n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2F0AJA0_9PROT)

HSP 1 Score: 73.6 bits (179), Expect = 6.350e-15
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   16 LNGGLDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFMGKVVVVA 153
            +   L S PCLVLNADYQPLSY PLSLWGWQ+ IKAVF+ +V +VA
Sbjct:    1 MRANLQSSPCLVLNADYQPLSYFPLSLWGWQETIKAVFLERVNIVA 46
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132280.2316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRG1_ECTSI7.200e-2284.00HNH endonuclease family protein n=1 Tax=Ectocarpus... [more]
A0A2S6RF48_9PROT4.070e-1671.74HNHc domain-containing protein n=2 Tax=Alphaproteo... [more]
A0A1Z8VVK9_9PROT1.120e-1578.57HNH endonuclease n=2 Tax=Alphaproteobacteria TaxID... [more]
A0A6I7P8K3_9PROT1.810e-1573.81HNH endonuclease n=1 Tax=Geminicoccaceae bacterium... [more]
A0A1Z9FHU5_9RICK3.140e-1576.19HNH endonuclease n=1 Tax=Rickettsiales bacterium T... [more]
A0A2D6G2E5_9PROT3.200e-1565.22HNH endonuclease n=1 Tax=Rhodospirillaceae bacteri... [more]
A0A2E4X6Q5_9PROT3.710e-1565.22HNH endonuclease (Fragment) n=1 Tax=Pelagibacteral... [more]
A0A7C1YT19_9SPHN4.050e-1570.73HNH endonuclease (Fragment) n=1 Tax=Sphingomonadal... [more]
A0A849EEI8_9HYPH6.110e-1575.61HNH endonuclease n=1 Tax=Anderseniella sp. TaxID=1... [more]
A0A2F0AJA0_9PROT6.350e-1569.57HNH endonuclease n=2 Tax=Alphaproteobacteria TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132280contigH-elongata_contig132280:599..1351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue1.7e-17
Seed eggNOG ortholog2880.D8LRG1
EggNOG free text desc.HNH endonuclease
EggNOG OGs2QQI3@2759,COG1403@1
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHNH endonuclease family protein
Ec32 orthologEc-18_004400.1
Exons2
Model size153
Cds size153
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929785.4834607-CDS-H-elongata_contig132280:598..6901622929785.4834607-CDS-H-elongata_contig132280:598..690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132280 599..690 +
1691679156.7705824-CDS-H-elongata_contig132280:598..6901691679156.7705824-CDS-H-elongata_contig132280:598..690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132280 599..690 +
1622929785.4974322-CDS-H-elongata_contig132280:1290..13511622929785.4974322-CDS-H-elongata_contig132280:1290..1351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132280 1291..1351 +
1691679156.7827902-CDS-H-elongata_contig132280:1290..13511691679156.7827902-CDS-H-elongata_contig132280:1290..1351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132280 1291..1351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132280.2316.1prot_H-elongata_contig132280.2316.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132280 599..1351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132280.2316.1

>prot_H-elongata_contig132280.2316.1 ID=prot_H-elongata_contig132280.2316.1|Name=mRNA_H-elongata_contig132280.2316.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
MKKFNLNGGLDSCPCLVLNADYQPLSYLPLSLWGWQDVIKAVFMGKVVVV
A
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mRNA from alignment at H-elongata_contig132280:599..1351+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132280.2316.1 ID=mRNA_H-elongata_contig132280.2316.1|Name=mRNA_H-elongata_contig132280.2316.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=753bp|location=Sequence derived from alignment at H-elongata_contig132280:599..1351+ (Himanthalia elongata Himel1 dioecious)
ATGAAGAAGTTTAACTTGAACGGGGGGCTGGATTCTTGTCCCTGTCTGGT
GCTGAACGCCGACTATCAGCCTTTGTCTTACCTTCCACTCAGGTTAGTTT
ATAATAGTAATAAAAATACTAATACTATTCTATGACACTACTAATTCTAG
TCTAACCCTAACCCTAAGTAATAATAATGCTGATTCTGTACCAGGTGCTA
TTAGTAGTATAATCTATCGAATTCCGTACTATTAGTAATATTACTAGTAT
GCAGTATGCAGGAACTCCAGCATTTACGATGTCCTCTTGAAAAGGATACA
GTACAGAAATGTCTCTAGCTCTCGAGATGCATTAGAATAAATGACGGACG
TGCTTGTGGCGCCATGGAACGATGTTGCTTCGGTTCCGCAGGGTTCGCTT
TCGGTGTACTGTACTGTACTATATACTCTCAAGCGTTGCAACTTTTTTAA
TCTGCAATTGTACTTGACTTGAGGGTTGCAACTTTTAAGGAGGCTCTTTT
CTGGTCCACGAGTATTTCATACATAGATCACATGTCCATGAAGATGTTGG
ACTGTTGGACTCTACATGGTTCAGCTTCCCTGCTAGCGCCCCATCGCTTC
TATCGCTTCTCCCATCGCTTCTCTGGTCTCCTGCAATATCTGATGTCTCC
TGGAATATCTGATATGGTTCTTCACTTTGGTGTCCTGTCCAGTTTGTGGG
GGTGGCAGGACGTGATCAAGGCCGTATTCATGGGTAAGGTAGTGGTGGTG
GCC
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Coding sequence (CDS) from alignment at H-elongata_contig132280:599..1351+

>mRNA_H-elongata_contig132280.2316.1 ID=mRNA_H-elongata_contig132280.2316.1|Name=mRNA_H-elongata_contig132280.2316.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig132280:599..1351+ (Himanthalia elongata Himel1 dioecious)
ATGAAGAAGTTTAACTTGAACGGGGGGCTGGATTCTTGTCCCTGTCTGGT
GCTGAACGCCGACTATCAGCCTTTGTCTTACCTTCCACTCAGATGAAGAA
GTTTAACTTGAACGGGGGGCTGGATTCTTGTCCCTGTCTGGTGCTGAACG
CCGACTATCAGCCTTTGTCTTACCTTCCACTCAGTTTGTGGGGGTGGCAG
GACGTGATCAAGGCCGTATTCATGGGTAAGGTAGTGGTGGTGGCCTTTGT
GGGGGTGGCAGGACGTGATCAAGGCCGTATTCATGGGTAAGGTAGTGGTG
GTGGCC
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