mRNA_H-elongata_contig13228.2315.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13228.2315.1 vs. uniprot
Match: A0A6H5JMM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM5_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 1.590e-18 Identity = 57/136 (41.91%), Postives = 78/136 (57.35%), Query Frame = 1
Query: 4 CNVIGLQEAKREGVSELMTSRYRVYCSGDYSGVKEEKGQHGVGLAIKEEIVNKVSKDGIAIEGISARLLKAGVSI-KSNFVTFVVAYAPTE--ETTEG----QKAKFLHPLTAPDHQCPLGD-VFILTDANDKTGK 387
C+VIGLQE +REG + Y + SG +G K+++G HGVG AIKE + V ++G +E IS RL+K + I ++ VTFVV YAPTE TT G K F L A + D + +L DAN +TG+
Sbjct: 12 CDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGRAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 147
BLAST of mRNA_H-elongata_contig13228.2315.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 2.590e-18 Identity = 57/136 (41.91%), Postives = 79/136 (58.09%), Query Frame = 1
Query: 4 CNVIGLQEAKREGVSELMTSRYRVYCSGDYSGVKEEKGQHGVGLAIKEEIVNKVSKDGIAIEGISARLLKAGVSI-KSNFVTFVVAYAPTE--ETTEG----QKAKFLHPLTAPDHQCPLGD-VFILTDANDKTGK 387
C+VIGLQE +REG + Y + SG +G K+++G HGVG+AIKE + V ++G +E IS RL+K + I ++ VTFVV YAPTE TT G K F L A + D + +L DAN +TG+
Sbjct: 12 CDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 147
BLAST of mRNA_H-elongata_contig13228.2315.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 6.530e-18 Identity = 57/136 (41.91%), Postives = 79/136 (58.09%), Query Frame = 1
Query: 4 CNVIGLQEAKREGVSELMTSRYRVYCSGDYSGVKEEKGQHGVGLAIKEEIVNKVSKDGIAIEGISARLLKAGVSI-KSNFVTFVVAYAPTE--ETTEG----QKAKFLHPLTAPDHQCPLGD-VFILTDANDKTGK 387
C+VIGLQE +REG + Y + SG +G K+++G HGVG+AIKE + V ++G +E IS RL+K + I ++ VTFVV YAPTE TT G K F L A + D + +L DAN +TG+
Sbjct: 12 CDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 147
BLAST of mRNA_H-elongata_contig13228.2315.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 9.050e-18 Identity = 57/136 (41.91%), Postives = 79/136 (58.09%), Query Frame = 1
Query: 4 CNVIGLQEAKREGVSELMTSRYRVYCSGDYSGVKEEKGQHGVGLAIKEEIVNKVSKDGIAIEGISARLLKAGVSI-KSNFVTFVVAYAPTE--ETTEG----QKAKFLHPLTAPDHQCPLGD-VFILTDANDKTGK 387
C+VIGLQE +REG + Y + SG +G K+++G HGVG+AIKE + V ++G +E IS RL+K + I ++ VTFVV YAPTE TT G K F L A + D + +L DAN +TG+
Sbjct: 691 CDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 826
BLAST of mRNA_H-elongata_contig13228.2315.1 vs. uniprot
Match: A0A6H5KBF3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF3_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 1.230e-17 Identity = 56/136 (41.18%), Postives = 77/136 (56.62%), Query Frame = 1
Query: 4 CNVIGLQEAKREGVSELMTSRYRVYCSGDYSGVKEEKGQHGVGLAIKEEIVNKVSKDGIAIEGISARLLKAGVSI-KSNFVTFVVAYAPTE--ETTEG----QKAKFLHPLTAPDHQCPLGD-VFILTDANDKTGK 387
C+VI LQE +REG + Y + SG +G K++KG H VG+AIKE + V ++G +E IS RL+K + I ++ VTFVV YAPTE TT G K F L A + D + +L DAN +TG+
Sbjct: 12 CDVIRLQETRREGQGSIAHDGYVIIWSGARAGTKDKKGVHRVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFSTALDAAIREVHSRDHLVVLMDANARTGR 147
BLAST of mRNA_H-elongata_contig13228.2315.1 vs. uniprot
Match: A0A6H5JM04_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM04_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 1.420e-17 Identity = 56/136 (41.18%), Postives = 77/136 (56.62%), Query Frame = 1
Query: 4 CNVIGLQEAKREGVSELMTSRYRVYCSGDYSGVKEEKGQHGVGLAIKEEIVNKVSKDGIAIEGISARLLKAGVSI-KSNFVTFVVAYAPTE--ETTEGQKAKFLHPL-TAPDHQC----PLGDVFILTDANDKTGK 387
C+VIGLQE +REG + Y + SG +G K+++G HGVG+AIKE + V ++G +E IS RL+K + I ++ VTFVV YAPTE TT G TAPD + +L DAN +TG+
Sbjct: 12 CDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTAPDAAIREVHSRDHLVVLMDANARTGR 147
BLAST of mRNA_H-elongata_contig13228.2315.1 vs. uniprot
Match: A0A6H5JUT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT2_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 1.830e-17 Identity = 57/136 (41.91%), Postives = 79/136 (58.09%), Query Frame = 1
Query: 4 CNVIGLQEAKREGVSELMTSRYRVYCSGDYSGVKEEKGQHGVGLAIKEEIVNKVSKDGIAIEGISARLLKAGVSI-KSNFVTFVVAYAPTE--ETTEG----QKAKFLHPLTAPDHQCPLGD-VFILTDANDKTGK 387
C+VI LQE +REG + Y + SG +G K+++G HGVG+AIKE + V ++G +E IS RL+KA + I ++ VTFVV YAPTE TT G K F L A + D + +L DAN +TG+
Sbjct: 12 CDVIELQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKARLQIGRTCRVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVYSRDHLVVLMDANARTGR 147
BLAST of mRNA_H-elongata_contig13228.2315.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 2.290e-17 Identity = 56/136 (41.18%), Postives = 78/136 (57.35%), Query Frame = 1
Query: 4 CNVIGLQEAKREGVSELMTSRYRVYCSGDYSGVKEEKGQHGVGLAIKEEIVNKVSKDGIAIEGISARLLKAGVSI-KSNFVTFVVAYAPTE--ETTEG----QKAKFLHPLTAPDHQCPLGD-VFILTDANDKTGK 387
C+VIGLQE +REG + Y + SG +G K+++G HGVG+AIKE I V ++G +E IS RL+K + I ++ VTFVV YAPTE +T G K F L A + D + +L AN +TG+
Sbjct: 43 CDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMGANARTGR 178
BLAST of mRNA_H-elongata_contig13228.2315.1 vs. uniprot
Match: A0A6H5K6P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P8_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 3.440e-17 Identity = 55/136 (40.44%), Postives = 79/136 (58.09%), Query Frame = 1
Query: 4 CNVIGLQEAKREGVSELMTSRYRVYCSGDYSGVKEEKGQHGVGLAIKEEIVNKVSKDGIAIEGISARLLKAGVSI-KSNFVTFVVAYAPTE--ETTEG----QKAKFLHPLTAPDHQCPLGD-VFILTDANDKTGK 387
C+V+GLQE +R+G + Y + SG +G K+++G HGVG+AIKE + V ++G +E IS RL+K + I ++ VTFVV YAPTE TT G K F L A + D + +L DAN +TG+
Sbjct: 59 CDVVGLQENRRDGQGSIPHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLLVLMDANARTGR 194
BLAST of mRNA_H-elongata_contig13228.2315.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 4.010e-17 Identity = 56/136 (41.18%), Postives = 77/136 (56.62%), Query Frame = 1
Query: 4 CNVIGLQEAKREGVSELMTSRYRVYCSGDYSGVKEEKGQHGVGLAIKEEIVNKVSKDGIAIEGISARLLKAGVSI-KSNFVTFVVAYAPTE--ETTEG----QKAKFLHPLTAPDHQCPLGD-VFILTDANDKTGK 387
C+VIGLQE +REG L Y + SG +G K+++G HGVG+AIKE + V + G +E I+ RL+K + I ++ VTFVV YAPTE TT G K F L + D + +L DAN +TG+
Sbjct: 12 CDVIGLQETRREGQGSLAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEKGRTVECINPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDGEIREVHSRDHLVVLMDANARTGR 147 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13228.2315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13228.2315.1 >prot_H-elongata_contig13228.2315.1 ID=prot_H-elongata_contig13228.2315.1|Name=mRNA_H-elongata_contig13228.2315.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp DCNVIGLQEAKREGVSELMTSRYRVYCSGDYSGVKEEKGQHGVGLAIKEEback to top mRNA from alignment at H-elongata_contig13228:4758..5144+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13228.2315.1 ID=mRNA_H-elongata_contig13228.2315.1|Name=mRNA_H-elongata_contig13228.2315.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=387bp|location=Sequence derived from alignment at H-elongata_contig13228:4758..5144+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13228:4758..5144+ >mRNA_H-elongata_contig13228.2315.1 ID=mRNA_H-elongata_contig13228.2315.1|Name=mRNA_H-elongata_contig13228.2315.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig13228:4758..5144+ (Himanthalia elongata Himel1 dioecious)back to top |