mRNA_H-elongata_contig13219.2308.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig13219.2308.1 vs. uniprot
Match: B1N8E9_9PHAE (Glutathione S-transferase 4 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E9_9PHAE) HSP 1 Score: 189 bits (479), Expect = 7.820e-54 Identity = 94/199 (47.24%), Postives = 138/199 (69.35%), Query Frame = 1
Query: 43 PITLYYFNFPGRAEAIRISLVLGGIEFKDEHLTFQELRSSEFKYLPVLQINGINYSQSTSLLRYVGNLAGLLPKDPLGALKVDEVVMIAEDLFIAVGTTMAIKDPEKQLEARKAAAEGKIKDVLEALEVKKSASPSSKFFFGESITIADLLIHAIVMSLESGKFEGIPKTIVSDVAPSLKNIHIDVMDNPKVKEWYSSK 639
P YF P R EA R++L + G++++D+ ++F+E + EFK LPV Q++G +Y+QST+LLRY G L G P+ PL +LKVDE+VMIAED+FI + +TM KD K+LE + GKIKD+LE + K A+ S F G S+TIAD+ +HA++ ++++G GIP T+V D+ PSLK + VM++PKVK +Y+SK
Sbjct: 2 PAVFNYFGIPARGEATRVALAVAGVDYEDKRMSFEEFGACEFKTLPVYQMDGTDYTQSTALLRYAGKLGGQYPECPLASLKVDEIVMIAEDVFINLFSTMGEKDEAKKLEKCQTLMAGKIKDLLEDIARKVEANKCSTFCVGASLTIADIQVHAVIATVQAGFLTGIPTTMVEDICPSLKALDHAVMEHPKVKAYYASK 200
BLAST of mRNA_H-elongata_contig13219.2308.1 vs. uniprot
Match: D7G537_ECTSI (Glutathione S-transferase n=4 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G537_ECTSI) HSP 1 Score: 163 bits (412), Expect = 5.330e-44 Identity = 90/204 (44.12%), Postives = 128/204 (62.75%), Query Frame = 1
Query: 34 MTAPITLYYFNFPGRAEAIRISLVLGGIEFKDEHLTFQELRSSEF--KYLPVLQINGINYSQSTSLLRYVGNLAGLLPKDPLGALKVDEVVMIAEDLFIAVGTTMAIKDPEKQLEARKAAAEGKIKDVLEALEVKKSASPSSKFFFGESITIADLLIHAIVMSLESGKFEGIPKTIVSDVAPSLKNIHIDVMDNPKVKEWYSSK 639
M + TL YF PGR EA R++L G +F+D + F E + ++ K LPVL+++ Y+QST+LLRY G L GL P D L ALKVDE+VMIAED+ + M +D K EGKIK ++ L K +A+PSSKFF G S TIADL +HA++ + E+ G+P T ++D AP+L + ++++PKVK +Y+SK
Sbjct: 1 MPSTATLNYFGLPGRGEATRVALAYAGKDFEDNRMGFPEYGACKWAGKGLPVLEMDDAEYTQSTALLRYAGKLGGLYPDDALAALKVDEIVMIAEDVMANMFKCMGQEDDT----VAKEVLEGKIKTLVGMLVAKLAANPSSKFFVGNSPTIADLQVHAVIKNFEANFLTGLPTTHIADTAPTLMEMQAALLEDPKVKAYYASK 200
BLAST of mRNA_H-elongata_contig13219.2308.1 vs. uniprot
Match: D7G5G1_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G1_ECTSI) HSP 1 Score: 141 bits (356), Expect = 1.550e-35 Identity = 83/198 (41.92%), Postives = 122/198 (61.62%), Query Frame = 1
Query: 34 MTAPITLYYFNFPGRAEAIRISLVLGGIEFKDEHLTFQELRSSEFKY--LPVLQINGINYSQSTSLLRYVGNLAGLLPKDPLGALKVDEVVMIAEDLFIAVGTTMAIKDPEKQLEARKAAAEGKIKDVLEALEVKKSASPSSKFFFGESITIADLL--IHAIVMSLESGKFEGIPKTIVSDVAPSLKNIHIDVMDNPK 615
M + TL+YF+ PGRAEA R++L G +F+D + F E +S++ LPVL+++ Y+QST+LLRY G L GL P D L ALKVDE+VMIAED+ + + KD EGKIK ++E L + +A+ SSKFF G TIADL +HA++ + E+ G+P T ++D AP+L + ++++PK
Sbjct: 1 MPSTATLHYFDDPGRAEATRVALAYAGKDFEDNIMGFPEYGASKWAGIGLPVLEMDDAEYTQSTALLRYAGKLGGLYPDDALAALKVDEIVMIAEDVMANMFKCVDQKDDTMA----NGLLEGKIKTLVEMLTSRLAANASSKFFVGHPPTIADLQARVHAVIKNFEANFLTGLPTTHIADTAPTLMEMQAALLEDPK 194
BLAST of mRNA_H-elongata_contig13219.2308.1 vs. uniprot
Match: D7G5G0_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G0_ECTSI) HSP 1 Score: 134 bits (336), Expect = 2.260e-33 Identity = 78/155 (50.32%), Postives = 99/155 (63.87%), Query Frame = 1
Query: 34 MTAPITLYYFNFPGRAEAIRISLVLGGIEFKDEHLTFQELRSSEF--KYLPVLQINGINYSQSTSLLRYVGNLAGLLPKDPLGALKVDEVVMIAEDLFIAVGTTMAIKDPEKQLEARKAAAEGKIKDVLEALEVKKSASPSSKFFFGESITIADL 492
M++ TL YF PGRAEA R++L G EF D+ LTF E + ++ K LPVLQ++G Y+QST+LLRY G L GL P D L ALKVDE+VMI ED+ + M +D K EGK+K ++E L K +A+PSSKFF G S TIADL
Sbjct: 1 MSSTPTLNYFELPGRAEATRVALAYAGKEFDDKRLTFPEYGACKWAGKGLPVLQMDGAEYTQSTALLRYAGKLGGLYPDDALAALKVDEIVMIGEDILANMFKCMGAEDDT----VAKGVLEGKVKGLVELLVSKLAANPSSKFFVGTSPTIADL 151
BLAST of mRNA_H-elongata_contig13219.2308.1 vs. uniprot
Match: A0A6H5JNS9_9PHAE (GST C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS9_9PHAE) HSP 1 Score: 133 bits (334), Expect = 7.220e-32 Identity = 75/186 (40.32%), Postives = 112/186 (60.22%), Query Frame = 1
Query: 70 PGRAEAIRISLVLGGIEFKDEHLTFQELRSSEF--KYLPVLQINGINYSQSTSLLRYVGNLAGLLPKDPLGALKVDEVVMIAEDLFIAVGTTMAIKDPEKQLEARKAAAEGKIKDVLEALEVKKSASPSSKFFFGESITIADLLIHAIVMSLESGKFEGIPKTIVSDVAPSLKNIHIDVMDNPKVK 621
PGR EA ++L GG +F D + F E + ++ K LPVL+++ Y QST+LLRY G + GL P D L AL+VDE+VMIAED+ + M D K EGKIK ++E L K + + SSKFF G S TIA+L +HA++ + E+ +P T+++D AP++ + + ++ +PK K
Sbjct: 55 PGRGEATGVALAYGGKDFVDNTMGFSEHGACKWAGKGLPVLEMDDAEYFQSTALLRYAGKMGGLYPDDALAALEVDEIVMIAEDVLTNMFKCMGQTDDT----VAKGVLEGKIKTLVEMLVAKLATNQSSKFFVGNSPTIANLQVHAVIKNFEANFLTDLPTTLIADTAPTVMEMEVALLQDPKEK 236
BLAST of mRNA_H-elongata_contig13219.2308.1 vs. uniprot
Match: A0A2P4WXS9_9STRA (Glutathione S-transferase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WXS9_9STRA) HSP 1 Score: 129 bits (325), Expect = 1.980e-29 Identity = 81/204 (39.71%), Postives = 128/204 (62.75%), Query Frame = 1
Query: 46 ITLYYFNFPGRAEAIRISLVLGGIEFKDEHLTFQELRSSE----FKYLPVLQINGINYSQSTSLLRYVGNLAGLLPK-DPLGALKVDEVVMIAEDLFIAVG--TTMAIKDPEKQLEARKAAAEGKIKDVLEALEVKKSASPSSKFFFGESITIADLLIHAIVMSLESGKFEGIPKTIVSDVAPSLKNIHIDVMDNPKVKEWYSS 636
+ L YF PGRAE IR++ +GGIEF+DE L+F+E + F LP+L++NG SQS ++LRY G+LAGL P D L + VDE+ ++ ++++ T+ +DPEKQ + R+ ++ I LE LE K+ A+ + F G +T+ADL I+A+++SL++G+ GIP T ++D +L + V +PKV EWY++
Sbjct: 214 LKLTYFPIPGRAEPIRLAFFIGGIEFEDERLSFEEYEKVKSELPFNQLPILEVNGEPVSQSLAILRYAGSLAGLYPTTDMLESFHVDEIFVLIDEMYNKPEWRATVRERDPEKQKKMRENLSKEIIPKTLEFLE-KRVAAFNGSFATGTHLTVADLAIYALILSLKAGR-PGIP-TNITDPYKNLLCVFDQVKAHPKVVEWYAA 414
BLAST of mRNA_H-elongata_contig13219.2308.1 vs. uniprot
Match: A0A6A3RLV1_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3RLV1_9STRA) HSP 1 Score: 129 bits (324), Expect = 2.720e-29 Identity = 79/207 (38.16%), Postives = 131/207 (63.29%), Query Frame = 1
Query: 37 TAPITLYYFNFPGRAEAIRISLVLGGIEFKDEHLTFQELRSSE----FKYLPVLQINGINYSQSTSLLRYVGNLAGLLPK-DPLGALKVDEVVMIAEDLFIAVG--TTMAIKDPEKQLEARKAAAEGKIKDVLEALEVKKSASPSSKFFFGESITIADLLIHAIVMSLESGKFEGIPKTIVSDVAPSLKNIHIDVMDNPKVKEWYSS 636
T + L YF PGRAE IR++ +GGI+F+DE L+F E + F LP+L+++G SQS ++LR+ G++ GL P DPL A +VDE+ ++ +++F + T+ +D +K L+ R+ A+G I L+ LE K+ A+ ++ G+++T+ADL I+A+V+ L++G+ GIP TI +D +L+ + V +PKV EW S+
Sbjct: 211 TPKLKLTYFPLPGRAEPIRLAFYIGGIDFEDERLSFDEFAEVKSRLPFNQLPMLEVDGEAISQSLAILRFAGSITGLYPTTDPLAAFRVDEIFVLIDEMFNSPAWRETVTERDHDKLLKMREGLAKGIIPKTLDFLE-KRVAAFKGQYATGKALTVADLAIYAVVLLLKAGR-PGIPITI-ADPYENLQRVFGQVKAHPKVVEWNSA 414
BLAST of mRNA_H-elongata_contig13219.2308.1 vs. uniprot
Match: A0A662XXB3_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XXB3_9STRA) HSP 1 Score: 127 bits (319), Expect = 1.330e-28 Identity = 83/208 (39.90%), Postives = 125/208 (60.10%), Query Frame = 1
Query: 37 TAP-ITLYYFNFPGRAEAIRISLVLGGIEFKDEHLTFQELRSSE----FKYLPVLQINGINYSQSTSLLRYVGNLAGLLPK-DPLGALKVDEVVMIAEDL--FIAVGTTMAIKDPEKQLEARKAAAEGKIKDVLEALEVKKSASPSSKFFFGESITIADLLIHAIVMSLESGKFEGIPKTIVSDVAPSLKNIHIDVMDNPKVKEWYSS 636
TAP + L Y PGRAEAIR++ +GGIEF+DE + ++L S + F +P L+++G +QS +++RY G L+GL P D L A +VDE+ I +D+ F G ++ KDP KQLE RK A G + L LE K+ A + G ++T+ADL+I+ +V+SL+ G G+P TI +L+ I V+ +PKV EW ++
Sbjct: 210 TAPKLKLTYMPHPGRAEAIRLAFFIGGIEFEDERIPREDLASRKSSLPFNQVPALEVDGEVVAQSLAIIRYAGTLSGLYPTTDMLTAYRVDELFAIIDDMYNFPTWGASVREKDPAKQLELRKELASGMVPKTLGFLE-KRVAQFKGPYATGANLTVADLVIYGMVLSLKVGA-PGLPSTITGSYT-NLQRIFAQVVAHPKVAEWNAA 414
BLAST of mRNA_H-elongata_contig13219.2308.1 vs. uniprot
Match: A0A1V9YG44_9STRA (Glutathione S-transferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YG44_9STRA) HSP 1 Score: 121 bits (304), Expect = 2.050e-28 Identity = 71/199 (35.68%), Postives = 117/199 (58.79%), Query Frame = 1
Query: 46 ITLYYFNFPGRAEAIRISLVLGGIEFKDEHLTFQELRSSE----FKYLPVLQINGINYSQSTSLLRYVGNLAGLLPK-DPLGALKVDEVVMIAEDLFIAVGTTMAIKDPEKQLEARKAAAEGKIKDVLEALEVKKSASPSSKFFFGESITIADLLIHAIVMSLESGKFEGIPKTIVSDVAPSLKNIHIDVMDNPKVKEW 627
+ + YF+ PGRAE R++L + I F+DE LT ++ + + FK LP L +NG +QS + RY +L GL P DPL A ++DE++ +D+ A+ M +D +K+ E K E K+ +L +E + P++K+F G+ +++AD+ ++ +L SGK+EGIPKT+V D P K + V +P+V+ W
Sbjct: 6 LKITYFDMPGRAELTRLALFVSDIPFEDERLTGEQFGARKPSLPFKQLPTLTVNGEVLAQSHPMARYAASLGGLYPAADPLAAYRIDEILAANQDVLNAMIAAMFTRDLDKKPELIKELVETKLPQMLPCIEARL---PTTKYFLGDKLSLADIDLYLSYTNLSSGKWEGIPKTLV-DGYPRWKALSASVAAHPRVEAW 200
BLAST of mRNA_H-elongata_contig13219.2308.1 vs. uniprot
Match: A0A662Y425_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y425_9STRA) HSP 1 Score: 126 bits (317), Expect = 2.500e-28 Identity = 82/207 (39.61%), Postives = 124/207 (59.90%), Query Frame = 1
Query: 37 TAPITLYYFNFPGRAEAIRISLVLGGIEFKDEHLTFQELR----SSEFKYLPVLQINGINYSQSTSLLRYVGNLAGLLPK-DPLGALKVDEVVMIAEDLFIAVGTTMAIK--DPEKQLEARKAAAEGKIKDVLEALEVKKSASPSSKFFFGESITIADLLIHAIVMSLESGKFEGIPKTIVSDVAPSLKNIHIDVMDNPKVKEWYSS 636
T + L Y PGRAE IR++ +GGIEF+DE L+F++L + F +PVL+++G +QS ++LRY G+LAGL P D L A +VDE + + +D+F T A + DP KQLE R A G + L LE K+ A + G S T+ADL+I+A++++L++ GIP TI +D +L+ + V +PKV EW ++
Sbjct: 211 TPKLKLTYAPLPGRAEPIRLAFFIGGIEFEDERLSFEDLAKLFPTLPFNQVPVLEVDGEVVAQSGAILRYAGSLAGLYPTTDMLAAYRVDEFLALIDDMFNFPDWTCANREQDPAKQLELRAGMANGIVPKTLGFLE-KRVAQFKGPYATGASFTVADLVIYALLVTLKTRGVRGIPVTI-TDSYGNLQRVFNQVKAHPKVAEWNAA 415 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13219.2308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13219.2308.1 >prot_H-elongata_contig13219.2308.1 ID=prot_H-elongata_contig13219.2308.1|Name=mRNA_H-elongata_contig13219.2308.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=204bp MTAPITLYYFNFPGRAEAIRISLVLGGIEFKDEHLTFQELRSSEFKYLPVback to top mRNA from alignment at H-elongata_contig13219:1583..5399+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13219.2308.1 ID=mRNA_H-elongata_contig13219.2308.1|Name=mRNA_H-elongata_contig13219.2308.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3817bp|location=Sequence derived from alignment at H-elongata_contig13219:1583..5399+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13219:1583..5399+ >mRNA_H-elongata_contig13219.2308.1 ID=mRNA_H-elongata_contig13219.2308.1|Name=mRNA_H-elongata_contig13219.2308.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1224bp|location=Sequence derived from alignment at H-elongata_contig13219:1583..5399+ (Himanthalia elongata Himel1 dioecious)back to top |