mRNA_H-elongata_contig132164.2306.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132164.2306.1
Unique NamemRNA_H-elongata_contig132164.2306.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig132164.2306.1 vs. uniprot
Match: D8LQR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR9_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.820e-37
Identity = 55/77 (71.43%), Postives = 66/77 (85.71%), Query Frame = 1
Query:    1 ITDSEGNSWTPYTPRNSPWKFKKTKRWQPLLESDGLGYISSQDHVTPHIGATARYYGFESSKDEEAFASRKIDYPDY 231
            +TDS GNSWTPYTP NSP++F   K+WQPL+ESDGLGY+SSQ+HVTPHIG+T RY+GF S +DEE F+SR ID PDY
Sbjct:    1 MTDSAGNSWTPYTPSNSPYEFTDFKKWQPLVESDGLGYVSSQEHVTPHIGSTGRYFGFSSKEDEEDFSSRTIDAPDY 77          
BLAST of mRNA_H-elongata_contig132164.2306.1 vs. uniprot
Match: D8LSP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSP1_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.230e-35
Identity = 57/77 (74.03%), Postives = 68/77 (88.31%), Query Frame = 1
Query:    1 ITDSEGNSWTPYTPRNSPWKFKKTKRWQPLLESDGLGYISSQDHVTPHIGATARYYGFESSKDEEAFASRKIDYPDY 231
            +TDS GNSWTPYTPRNSP++F   K+WQPL ESDGLGY+S+Q+HVTPHIG+T RY+GF S +DEEAF+SRKID PDY
Sbjct:   78 MTDSAGNSWTPYTPRNSPYEFTNFKKWQPLEESDGLGYVSTQEHVTPHIGSTGRYFGFSSKEDEEAFSSRKIDGPDY 154          
BLAST of mRNA_H-elongata_contig132164.2306.1 vs. uniprot
Match: D8LLS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS4_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 3.020e-34
Identity = 57/77 (74.03%), Postives = 67/77 (87.01%), Query Frame = 1
Query:    1 ITDSEGNSWTPYTPRNSPWKFKKTKRWQPLLESDGLGYISSQDHVTPHIGATARYYGFESSKDEEAFASRKIDYPDY 231
            +TDSEGNSWTPY PRNSP +F  TK+WQPL ESDGLGYI++Q+HVTPHIG+T RY+GF S +DEEAF+SR ID PDY
Sbjct:  222 MTDSEGNSWTPYVPRNSPNEFTDTKKWQPLEESDGLGYITTQEHVTPHIGSTGRYFGFSSKEDEEAFSSRTIDRPDY 298          
BLAST of mRNA_H-elongata_contig132164.2306.1 vs. uniprot
Match: A0A6H5K7C3_9PHAE (CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7C3_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 6.990e-34
Identity = 55/77 (71.43%), Postives = 66/77 (85.71%), Query Frame = 1
Query:    1 ITDSEGNSWTPYTPRNSPWKFKKTKRWQPLLESDGLGYISSQDHVTPHIGATARYYGFESSKDEEAFASRKIDYPDY 231
            +TDSEG+SWTPY PRNSP++  K KRWQPL+ESDG+GY+S Q+HVTPHIG+T RY GF S +DEEAF+SR ID PDY
Sbjct:   99 MTDSEGHSWTPYVPRNSPYELTKIKRWQPLMESDGVGYVSIQEHVTPHIGSTGRYLGFSSKEDEEAFSSRTIDAPDY 175          
BLAST of mRNA_H-elongata_contig132164.2306.1 vs. uniprot
Match: A0A6H5L4I1_9PHAE (CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4I1_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 8.520e-31
Identity = 50/76 (65.79%), Postives = 67/76 (88.16%), Query Frame = 1
Query:    4 TDSEGNSWTPYTPRNSPWKFKKTKRWQPLLESDGLGYISSQDHVTPHIGATARYYGFESSKDEEAFASRKIDYPDY 231
            TDS GN W  YTP+N+P+KF +TK+WQPLLESDGLGYI++Q+HVTPHIG TAR++GF+++++EEA+ SRK+D P Y
Sbjct:  215 TDSGGNEWNGYTPKNTPYKFARTKKWQPLLESDGLGYITAQEHVTPHIGVTARFFGFDTAENEEAWGSRKLDAPPY 290          
BLAST of mRNA_H-elongata_contig132164.2306.1 vs. uniprot
Match: A0A6H5JTZ2_9PHAE (CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTZ2_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 5.660e-22
Identity = 47/111 (42.34%), Postives = 63/111 (56.76%), Query Frame = 1
Query:    1 ITDSEGNSWTPYTPRNSPWK---------------------------------FKKTKRWQPLLESDGLGYISSQDHVTPHIGATARYYGFESSKDEEAFASRKIDYPDYE 234
             +DS GN+W  Y P+NSP+K                                 F  TKRWQPL+ES+GLGY++SQ HVTPHIG T R++GF +S+DEEA+ +R +D P Y+
Sbjct:  133 FSDSAGNTWDGYEPKNSPYKTGRELAFFAHDLAILSAVRCAPCSFPKNCRRSQFSSTKRWQPLMESNGLGYLNSQVHVTPHIGVTGRFFGFNTSEDEEAWGARTLDRPPYQ 243          
BLAST of mRNA_H-elongata_contig132164.2306.1 vs. uniprot
Match: A0A8J5X3W0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X3W0_DIALT)

HSP 1 Score: 61.2 bits (147), Expect = 3.880e-9
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 1
Query:   34 YTPRNSPWKFKKTKRWQPLLESDGLGYISSQDHVTPHIGATAR 162
            Y+P NS  ++K+ + WQPL E DG GYI++Q HVTPHIG TAR
Sbjct:  217 YSPVNSADRYKRKRLWQPLPEHDGRGYIANQQHVTPHIGWTAR 259          
BLAST of mRNA_H-elongata_contig132164.2306.1 vs. uniprot
Match: A0A7S1FQU0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQU0_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.650e-7
Identity = 27/56 (48.21%), Postives = 32/56 (57.14%), Query Frame = 1
Query:   64 KKTKRWQPLLESDGLGYISSQDHVTPHIGATARYYGFESSKDEEAFASRKIDYPDY 231
            K  KRWQPLLE DG GY + Q+HVTPHIG   +          E   SRK+  PD+
Sbjct:  267 KAKKRWQPLLEDDGRGYFTRQEHVTPHIGTLGKPLVLS----REEMNSRKLPKPDF 318          
BLAST of mRNA_H-elongata_contig132164.2306.1 vs. uniprot
Match: A0A7S2EJS5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EJS5_TRICV)

HSP 1 Score: 50.4 bits (119), Expect = 8.190e-6
Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 1
Query:   76 RWQPLLESDGLGYISSQDHVTPHIGATARYYGFESSKDEEAFASRKIDY 222
            RWQP+LE +G G+ S Q+HVTPHIG  A++  F S  D +   + K  Y
Sbjct:   42 RWQPILEENGRGFFSRQEHVTPHIGTLAKH-AFLSDDDFQRRVAPKPSY 89          
BLAST of mRNA_H-elongata_contig132164.2306.1 vs. uniprot
Match: A0A7J7QQR7_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QQR7_9CHLO)

HSP 1 Score: 50.8 bits (120), Expect = 1.700e-5
Identity = 25/65 (38.46%), Postives = 34/65 (52.31%), Query Frame = 1
Query:   34 YTPRNSPWKFKKTKRWQPLLESDGLGYISSQDHVTPHIGATARYYGFESSKDEEAFASRKIDYPD 228
            + P N  +  +K  +WQPLLE++ LGY   Q H+TP IG   R  GF    D  A  +    YP+
Sbjct:   33 FIPSNDAFSLRKLTKWQPLLETNELGYFFVQQHITPQIG---RAQGFSLGPDGGAAHTSAPPYPE 94          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132164.2306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LQR9_ECTSI1.820e-3771.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSP1_ECTSI1.230e-3574.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLS4_ECTSI3.020e-3474.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7C3_9PHAE6.990e-3471.43CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A6H5L4I1_9PHAE8.520e-3165.79CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A6H5JTZ2_9PHAE5.660e-2242.34CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A8J5X3W0_DIALT3.880e-960.47Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S1FQU0_9STRA1.650e-748.21Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2EJS5_TRICV8.190e-646.94Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7J7QQR7_9CHLO1.700e-538.46Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132164contigH-elongata_contig132164:757..1478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue3e-29
Seed eggNOG ortholog2880.D8LSP1
EggNOG OGs2CZWT@1,2SBYZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_002040.1
Exons2
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929784.4866285-CDS-H-elongata_contig132164:756..8161622929784.4866285-CDS-H-elongata_contig132164:756..816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132164 757..816 +
1691679156.3428354-CDS-H-elongata_contig132164:756..8161691679156.3428354-CDS-H-elongata_contig132164:756..816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132164 757..816 +
1622929784.5044131-CDS-H-elongata_contig132164:1301..14781622929784.5044131-CDS-H-elongata_contig132164:1301..1478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132164 1302..1478 +
1691679156.3595483-CDS-H-elongata_contig132164:1301..14781691679156.3595483-CDS-H-elongata_contig132164:1301..1478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132164 1302..1478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132164.2306.1prot_H-elongata_contig132164.2306.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132164 757..1478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132164.2306.1

>prot_H-elongata_contig132164.2306.1 ID=prot_H-elongata_contig132164.2306.1|Name=mRNA_H-elongata_contig132164.2306.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
ITDSEGNSWTPYTPRNSPWKFKKTKRWQPLLESDGLGYISSQDHVTPHIG
ATARYYGFESSKDEEAFASRKIDYPDYE*
back to top

mRNA from alignment at H-elongata_contig132164:757..1478+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132164.2306.1 ID=mRNA_H-elongata_contig132164.2306.1|Name=mRNA_H-elongata_contig132164.2306.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=722bp|location=Sequence derived from alignment at H-elongata_contig132164:757..1478+ (Himanthalia elongata Himel1 dioecious)
ATCACCGACTCGGAGGGCAATTCGTGGACGCCGTACACCCCGAGGAATTC TCCTTGGAAGGTTTGAATACTGTTGAATAGTAAAGTTTTTCCCGCCATTT TTTGTTTGAATTTTTCCGTAACTTCCCCCTCCCACCCCCCTCTCGTCTGT GCGCGCGCGAATACGTTGCACAAACTCCACACCTCTTAGGATTCATCGTT GTGATATGTCTCCCTGAGATAATATACATTCACGAGTCCCTCGAGCAATA TATATATATTGCTGGTCCCCTGGATGGCACCTCTCACGGCGCTAAGAGTG TGGATGTTCGGAGGGTTGGAATGAGTTCAAGGTTTTTCTAATAAAAATAT TCGAAGGCGCCCATTGTGGATGTTGCAAGCTCGGGCTAGTACGCTTGCCC CCATGGTAAATGAACTAGCTTACCGGTCGAACATCTGCTGCTTTTCTTCT CTTGTCAATTTGAAAAGGTCGAATATCGAAGTTATTTGTTAAAATCTGAC CACCTCGGACTATCCCGTGCCCCCTAACACAACACAAATTGCCAGTTCAA AAAGACAAAGCGCTGGCAGCCCCTACTGGAATCCGACGGCCTAGGCTACA TATCTTCGCAAGATCACGTGACGCCCCACATCGGGGCGACCGCTAGATAC TACGGATTCGAGTCTTCGAAGGATGAGGAGGCGTTTGCTTCACGGAAGAT CGATTACCCCGACTACGAGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig132164:757..1478+

>mRNA_H-elongata_contig132164.2306.1 ID=mRNA_H-elongata_contig132164.2306.1|Name=mRNA_H-elongata_contig132164.2306.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig132164:757..1478+ (Himanthalia elongata Himel1 dioecious)
ATCACCGACTCGGAGGGCAATTCGTGGACGCCGTACACCCCGAGGAATTC
TCCTTGGAAGATCACCGACTCGGAGGGCAATTCGTGGACGCCGTACACCC
CGAGGAATTCTCCTTGGAAGTTCAAAAAGACAAAGCGCTGGCAGCCCCTA
CTGGAATCCGACGGCCTAGGCTACATATCTTCGCAAGATCACGTGACGCC
CCACATCGGGGCGACCGCTAGATACTACGGATTCGAGTCTTCGAAGGATG
AGGAGGCGTTTGCTTCACGGAAGATCGATTACCCCGACTACGAGTGATTC
AAAAAGACAAAGCGCTGGCAGCCCCTACTGGAATCCGACGGCCTAGGCTA
CATATCTTCGCAAGATCACGTGACGCCCCACATCGGGGCGACCGCTAGAT
ACTACGGATTCGAGTCTTCGAAGGATGAGGAGGCGTTTGCTTCACGGAAG
ATCGATTACCCCGACTACGAGTGA
back to top