mRNA_H-elongata_contig13212.2305.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13212.2305.1
Unique NamemRNA_H-elongata_contig13212.2305.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13212.2305.1 vs. uniprot
Match: D8LKP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP8_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 2.050e-48
Identity = 77/103 (74.76%), Postives = 89/103 (86.41%), Query Frame = 1
Query:    1 RWEMIKTNPVKGTWASEEDSLLKALVEEHGRKHWSMISTQFPGRTGKQCRERWLNHLDARVVKITWTEEEDAVLCQAQAKLGNKWSQISKLLPGRAENALKNR 309
            RW+M+K NPVKG W+ EEDSLLK LV+E+GRK WS+I+TQFPGR+GKQCRERWLNHLD RV K  WT  ED  LC+AQ +LGNKWS+ISKLLPGRAENA+KNR
Sbjct:  122 RWQMVKANPVKGPWSPEEDSLLKVLVDEYGRKKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAEDMKLCEAQGRLGNKWSEISKLLPGRAENAVKNR 224          
BLAST of mRNA_H-elongata_contig13212.2305.1 vs. uniprot
Match: A0A6H5KU69_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU69_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 3.990e-46
Identity = 75/100 (75.00%), Postives = 86/100 (86.00%), Query Frame = 1
Query:   10 MIKTNPVKGTWASEEDSLLKALVEEHGRKHWSMISTQFPGRTGKQCRERWLNHLDARVVKITWTEEEDAVLCQAQAKLGNKWSQISKLLPGRAENALKNR 309
            M+K NPVKG W+ EEDSLLK LV+E+GRK WS+I+TQFPGR+GKQCRERWLNHLD RV K  WT  ED  LC+AQ +LGNKWS+ISKLLPGRAENA+KNR
Sbjct:    1 MVKANPVKGPWSPEEDSLLKVLVDEYGRKKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAEDVKLCEAQGRLGNKWSEISKLLPGRAENAVKNR 100          
BLAST of mRNA_H-elongata_contig13212.2305.1 vs. uniprot
Match: A0A835Z962_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z962_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.230e-45
Identity = 68/103 (66.02%), Postives = 86/103 (83.50%), Query Frame = 1
Query:    1 RWEMIKTNPVKGTWASEEDSLLKALVEEHGRKHWSMISTQFPGRTGKQCRERWLNHLDARVVKITWTEEEDAVLCQAQAKLGNKWSQISKLLPGRAENALKNR 309
            RW++I   PVKG WASEED +L+ALV+++G K WS ++T  PGRTGKQCRERWLNHLD RV+K +WT EED +L  AQ +LGN+WS+IS++LPGRAENA+KNR
Sbjct:   51 RWQIICDLPVKGPWASEEDDVLRALVKQYGNKKWSHVATGLPGRTGKQCRERWLNHLDIRVMKTSWTPEEDELLFDAQRELGNQWSKISRMLPGRAENAVKNR 153          
BLAST of mRNA_H-elongata_contig13212.2305.1 vs. uniprot
Match: F0YHL4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHL4_AURAN)

HSP 1 Score: 146 bits (369), Expect = 6.870e-43
Identity = 65/104 (62.50%), Postives = 83/104 (79.81%), Query Frame = 1
Query:    1 RWE-MIKTNPVKGTWASEEDSLLKALVEEHGRKHWSMISTQFPGRTGKQCRERWLNHLDARVVKITWTEEEDAVLCQAQAKLGNKWSQISKLLPGRAENALKNR 309
            RWE +++   VKG W  EEDSLL+ LV + G K W++I++  PGR GKQCRERWLNHLD RV+K  WT +EDAVL +AQ ++GNKWS+I++LLPGRAENA+KNR
Sbjct:   47 RWEAVVRHTAVKGPWLPEEDSLLRQLVNKFGPKRWALIASHIPGRAGKQCRERWLNHLDTRVIKSDWTPDEDAVLLEAQQRVGNKWSEIARLLPGRAENAVKNR 150          
BLAST of mRNA_H-elongata_contig13212.2305.1 vs. uniprot
Match: D7FZ02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ02_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 1.040e-39
Identity = 63/103 (61.17%), Postives = 81/103 (78.64%), Query Frame = 1
Query:    1 RWEMIKTNPVKGTWASEEDSLLKALVEEHGRKHWSMISTQFPGRTGKQCRERWLNHLDARVVKITWTEEEDAVLCQAQAKLGNKWSQISKLLPGRAENALKNR 309
            RW  +K  PVKG W+SEED  LK LV+E G K W++++  FPGR+GKQCRERW NH+D RV K  W+ EED +LC+AQ +LGNKWS++SK+L GR+ENA+KNR
Sbjct:   55 RWNYVKETPVKGPWSSEEDDHLKRLVDEFGSKKWNLLARAFPGRSGKQCRERWHNHVDGRVKKGEWSAEEDQILCEAQRQLGNKWSEMSKILVGRSENAIKNR 157          
BLAST of mRNA_H-elongata_contig13212.2305.1 vs. uniprot
Match: A0A7S2WV82_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV82_9STRA)

HSP 1 Score: 147 bits (370), Expect = 9.850e-39
Identity = 63/103 (61.17%), Postives = 80/103 (77.67%), Query Frame = 1
Query:    1 RWEMIKTNPVKGTWASEEDSLLKALVEEHGRKHWSMISTQFPGRTGKQCRERWLNHLDARVVKITWTEEEDAVLCQAQAKLGNKWSQISKLLPGRAENALKNR 309
            RW ++K NPVKG W  EED LL+ LV + G K WS I+ + PGR GKQCRERWLNHLD+ V K  WT EED +L +AQ ++GN+WS+I+++LPGRAENA+KNR
Sbjct:  178 RWRVVKNNPVKGPWLPEEDQLLRDLVGQFGPKQWSKIAEKIPGRAGKQCRERWLNHLDSSVKKSDWTPEEDKILLEAQRRVGNRWSEIARMLPGRAENAVKNR 280          
BLAST of mRNA_H-elongata_contig13212.2305.1 vs. uniprot
Match: W7TQR3_9STRA (Myb-related protein a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQR3_9STRA)

HSP 1 Score: 144 bits (362), Expect = 8.170e-38
Identity = 67/105 (63.81%), Postives = 80/105 (76.19%), Query Frame = 1
Query:    1 RWEMIKTNPVKGTWASEEDSLLKALVEEHGR--KHWSMISTQFPGRTGKQCRERWLNHLDARVVKITWTEEEDAVLCQAQAKLGNKWSQISKLLPGRAENALKNR 309
            RW+ IK  PVKG W+ EED+LL+ LV  +G   K WSM++   PGR GKQCRERWLNHLD  V K  W E EDA+LC AQ +LGNKWS+I+KLLPGRAEN++KNR
Sbjct:  189 RWDEIKDVPVKGPWSVEEDALLQLLVGRYGPRPKKWSMLAQHIPGRAGKQCRERWLNHLDRSVKKGEWEEGEDAILCDAQRRLGNKWSEIAKLLPGRAENSVKNR 293          
BLAST of mRNA_H-elongata_contig13212.2305.1 vs. uniprot
Match: K8YTL3_NANGC (V-myb myeloblastosis viral oncogene-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YTL3_NANGC)

HSP 1 Score: 144 bits (362), Expect = 9.890e-38
Identity = 67/105 (63.81%), Postives = 80/105 (76.19%), Query Frame = 1
Query:    1 RWEMIKTNPVKGTWASEEDSLLKALVEEHGR--KHWSMISTQFPGRTGKQCRERWLNHLDARVVKITWTEEEDAVLCQAQAKLGNKWSQISKLLPGRAENALKNR 309
            RW+ IK  PVKG W+ EED+LL+ LV  +G   K WSM++   PGR GKQCRERWLNHLD  V K  W E EDA+LC AQ +LGNKWS+I+KLLPGRAEN++KNR
Sbjct:   60 RWDEIKDVPVKGPWSVEEDALLQQLVGRYGPRPKKWSMLAQHIPGRAGKQCRERWLNHLDRSVKKGEWEEGEDAILCDAQRRLGNKWSEIAKLLPGRAENSVKNR 164          
BLAST of mRNA_H-elongata_contig13212.2305.1 vs. uniprot
Match: D8MAX1_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8MAX1_BLAHO)

HSP 1 Score: 140 bits (352), Expect = 5.870e-37
Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = 1
Query:    1 RWEMI-KTNPVKGTWASEEDSLLKALVEEHGRKHWSMISTQFPGRTGKQCRERWLNHLDARVVKITWTEEEDAVLCQAQAKLGNKWSQISKLLPGRAENALKNR 309
            RWE + +   VKG W+ EED LL++LVE+HG K WS I++   GR GKQCRERWLNHL   V K  WTEEED +L  AQ ++GNKWS ISKLLPGR+ENA+KNR
Sbjct:   52 RWEQVLRDQTVKGPWSEEEDKLLRSLVEKHGPKKWSTIASHINGRIGKQCRERWLNHLSPDVSKDVWTEEEDEILINAQFQMGNKWSFISKLLPGRSENAVKNR 155          
BLAST of mRNA_H-elongata_contig13212.2305.1 vs. uniprot
Match: A0A196SGZ8_BLAHN (Transcriptional activator Myb n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SGZ8_BLAHN)

HSP 1 Score: 138 bits (347), Expect = 2.580e-36
Identity = 63/104 (60.58%), Postives = 79/104 (75.96%), Query Frame = 1
Query:    1 RWE-MIKTNPVKGTWASEEDSLLKALVEEHGRKHWSMISTQFPGRTGKQCRERWLNHLDARVVKITWTEEEDAVLCQAQAKLGNKWSQISKLLPGRAENALKNR 309
            RWE +++   VKG W+ EED++L++LVE+ G K WS I++   GR GKQCRERWLNHL   V K  WTEEED +L  AQ ++GNKWS ISKLLPGR+ENA+KNR
Sbjct:   52 RWETVLRDQTVKGPWSEEEDAILRSLVEKFGPKKWSTIASYINGRIGKQCRERWLNHLSPTVTKDVWTEEEDEILINAQIQMGNKWSYISKLLPGRSENAVKNR 155          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13212.2305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKP8_ECTSI2.050e-4874.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU69_9PHAE3.990e-4675.00MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835Z962_9STRA1.230e-4566.02Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
F0YHL4_AURAN6.870e-4362.50Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
D7FZ02_ECTSI1.040e-3961.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2WV82_9STRA9.850e-3961.17Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
W7TQR3_9STRA8.170e-3863.81Myb-related protein a n=1 Tax=Nannochloropsis gadi... [more]
K8YTL3_NANGC9.890e-3863.81V-myb myeloblastosis viral oncogene-like protein n... [more]
D8MAX1_BLAHO5.870e-3762.50Uncharacterized protein n=1 Tax=Blastocystis homin... [more]
A0A196SGZ8_BLAHN2.580e-3660.58Transcriptional activator Myb n=1 Tax=Blastocystis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13212contigH-elongata_contig13212:3531..4016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.7
Seed ortholog evalue1.5e-39
Seed eggNOG ortholog2880.D8LKP8
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-03_001110.1
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13212.2305.1prot_H-elongata_contig13212.2305.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13212 3540..4016 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929784.3950672-UTR-H-elongata_contig13212:3530..35391622929784.3950672-UTR-H-elongata_contig13212:3530..3539Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13212 3531..3539 +
1691679156.307763-UTR-H-elongata_contig13212:3530..35391691679156.307763-UTR-H-elongata_contig13212:3530..3539Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13212 3531..3539 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929784.407119-CDS-H-elongata_contig13212:3539..36311622929784.407119-CDS-H-elongata_contig13212:3539..3631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13212 3540..3631 +
1691679156.3178756-CDS-H-elongata_contig13212:3539..36311691679156.3178756-CDS-H-elongata_contig13212:3539..3631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13212 3540..3631 +
1622929784.4352756-CDS-H-elongata_contig13212:3787..40161622929784.4352756-CDS-H-elongata_contig13212:3787..4016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13212 3788..4016 +
1691679156.326967-CDS-H-elongata_contig13212:3787..40161691679156.326967-CDS-H-elongata_contig13212:3787..4016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13212 3788..4016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13212.2305.1

>prot_H-elongata_contig13212.2305.1 ID=prot_H-elongata_contig13212.2305.1|Name=mRNA_H-elongata_contig13212.2305.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MIKTNPVKGTWASEEDSLLKALVEEHGRKHWSMISTQFPGRTGKQCRERW
LNHLDARVVKITWTEEEDAVLCQAQAKLGNKWSQISKLLPGRAENALKNR
SDMSSK*
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mRNA from alignment at H-elongata_contig13212:3531..4016+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13212.2305.1 ID=mRNA_H-elongata_contig13212.2305.1|Name=mRNA_H-elongata_contig13212.2305.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=486bp|location=Sequence derived from alignment at H-elongata_contig13212:3531..4016+ (Himanthalia elongata Himel1 dioecious)
AGGTGGGAAATGATCAAGACCAACCCCGTCAAGGGAACGTGGGCCTCCGA AGAGGACTCATTGCTGAAAGCCTTAGTAGAGGAGCACGGCAGGAAGCATT GGTAAGGTTTGCGGCAACTCTTAGGCTTCCTTAAACTCTGCATGACCTGC AAGCGTGTCATCATGAGAGAAACCCTTCAGAACTATAGCTCTAAATCGCG TGGATTTTCCTACTGACGACTGGTTAGCTCAACGTAGTACGCGCGACATG CATCCAGGAGCATGATCTCAACGCAATTCCCCGGGAGGACCGGGAAGCAG TGCCGCGAGCGGTGGCTTAACCACCTAGATGCTCGCGTGGTAAAGATTAC TTGGACGGAAGAAGAAGACGCTGTGCTGTGCCAGGCGCAAGCAAAGCTTG GCAACAAATGGTCTCAGATTTCAAAGCTTCTGCCTGGAAGGGCGGAAAAC GCTCTGAAAAACCGGTCAGATATGTCTTCTAAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig13212:3531..4016+

>mRNA_H-elongata_contig13212.2305.1 ID=mRNA_H-elongata_contig13212.2305.1|Name=mRNA_H-elongata_contig13212.2305.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig13212:3531..4016+ (Himanthalia elongata Himel1 dioecious)
ATGATCAAGACCAACCCCGTCAAGGGAACGTGGGCCTCCGAAGAGGACTC
ATTGCTGAAAGCCTTAGTAGAGGAGCACGGCAGGAAGCATTGATGATCAA
GACCAACCCCGTCAAGGGAACGTGGGCCTCCGAAGAGGACTCATTGCTGA
AAGCCTTAGTAGAGGAGCACGGCAGGAAGCATTGGAGCATGATCTCAACG
CAATTCCCCGGGAGGACCGGGAAGCAGTGCCGCGAGCGGTGGCTTAACCA
CCTAGATGCTCGCGTGGTAAAGATTACTTGGACGGAAGAAGAAGACGCTG
TGCTGTGCCAGGCGCAAGCAAAGCTTGGCAACAAATGGTCTCAGATTTCA
AAGCTTCTGCCTGGAAGGGCGGAAAACGCTCTGAAAAACCGGTCAGATAT
GTCTTCTAAGTAAGAGCATGATCTCAACGCAATTCCCCGGGAGGACCGGG
AAGCAGTGCCGCGAGCGGTGGCTTAACCACCTAGATGCTCGCGTGGTAAA
GATTACTTGGACGGAAGAAGAAGACGCTGTGCTGTGCCAGGCGCAAGCAA
AGCTTGGCAACAAATGGTCTCAGATTTCAAAGCTTCTGCCTGGAAGGGCG
GAAAACGCTCTGAAAAACCGGTCAGATATGTCTTCTAAGTAA
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