mRNA_H-elongata_contig132108.2304.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132108.2304.1
Unique NamemRNA_H-elongata_contig132108.2304.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig132108.2304.1 vs. uniprot
Match: A0A6H5L4N4_9PHAE (RNA cytidine acetyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4N4_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 2.780e-51
Identity = 88/91 (96.70%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:    1 NRGRGKSAAIGLCLAGAIAYGYSNIFVTAPSPENLSTVFEFVLKGFDLLHFSDHLDYEVIQSTNPAFNRAVVRVNVFKDHRQTIQYIQPHD 273
            +RGRGKSAAIGLCLAGAIAYGYSNIFVTAPSPENLSTVFEFVLKGFDLLHFS+HLDYEVIQSTNPAFNRAVVR+NVFKDHRQTIQYIQPHD
Sbjct:  214 SRGRGKSAAIGLCLAGAIAYGYSNIFVTAPSPENLSTVFEFVLKGFDLLHFSEHLDYEVIQSTNPAFNRAVVRINVFKDHRQTIQYIQPHD 304
[Close]
BLAST of mRNA_H-elongata_contig132108.2304.1 vs. uniprot
Match: A0A835Z409_9STRA (RNA cytidine acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z409_9STRA)

HSP 1 Score: 169 bits (429), Expect = 7.860e-47
Identity = 79/91 (86.81%), Postives = 89/91 (97.80%), Query Frame = 1 
Query:    1 NRGRGKSAAIGLCLAGAIAYGYSNIFVTAPSPENLSTVFEFVLKGFDLLHFSDHLDYEVIQSTNPAFNRAVVRVNVFKDHRQTIQYIQPHD 273
            +RGRGKSAAIGLCLAGAIAYGYSNIFVTAPSPENL TVFEFVLKGFDLL +++H+DYEV+QS+NPAFN+AVVR+NVF+DHRQTIQYIQPHD
Sbjct:  286 SRGRGKSAAIGLCLAGAIAYGYSNIFVTAPSPENLGTVFEFVLKGFDLLKYTEHMDYEVLQSSNPAFNKAVVRINVFRDHRQTIQYIQPHD 376
[Close]
BLAST of mRNA_H-elongata_contig132108.2304.1 vs. uniprot
Match: UPI00052F389B (N-acetyltransferase 10-like isoform X1 n=2 Tax=Tinamus guttatus TaxID=94827 RepID=UPI00052F389B)

HSP 1 Score: 149 bits (375), Expect = 3.000e-41
Identity = 70/98 (71.43%), Postives = 84/98 (85.71%), Query Frame = 1 
Query:    4 RGRGKSAAIGLCLAGAIAYGYSNIFVTAPSPENLSTVFEFVLKGFDLLHFSDHLDYEVIQSTNPAFNRAVVRVNVFKDHRQTIQYIQPHDRFGWVRLG 297
            RGRGKSAA+GL +AGA+A+GYSNIFVT+PSP+NL T+FEF+ KGFD L + +HLDYE+IQS NP FN+AVVRVNVFK+HRQTIQYI P D    V+LG
Sbjct:  133 RGRGKSAALGLAIAGAVAFGYSNIFVTSPSPDNLHTLFEFIFKGFDALQYQEHLDYEIIQSLNPEFNKAVVRVNVFKEHRQTIQYIHPADS---VKLG 227
[Close]
BLAST of mRNA_H-elongata_contig132108.2304.1 vs. uniprot
Match: A0A484DU58_BRELC (RNA cytidine acetyltransferase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DU58_BRELC)

HSP 1 Score: 152 bits (385), Expect = 6.760e-41
Identity = 70/99 (70.71%), Postives = 85/99 (85.86%), Query Frame = 1 
Query:    4 RGRGKSAAIGLCLAGAIAYGYSNIFVTAPSPENLSTVFEFVLKGFDLLHFSDHLDYEVIQSTNPAFNRAVVRVNVFKDHRQTIQYIQP--HDRFGWVRL 294
            RGRGKSAA+G+ LAGA+AYGYSNIFVTAPSPENLSTVF+FV KGFD L + +HLDYE++QSTNP +N AV+RVN+F++HRQTIQYIQP  H++     L
Sbjct:  286 RGRGKSAALGMSLAGAVAYGYSNIFVTAPSPENLSTVFDFVFKGFDALKYKEHLDYEIVQSTNPEYNHAVIRVNIFREHRQTIQYIQPTHHEKLAQAEL 384
[Close]
BLAST of mRNA_H-elongata_contig132108.2304.1 vs. uniprot
Match: UPI000C6D8198 (RNA cytidine acetyltransferase-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6D8198)

HSP 1 Score: 152 bits (384), Expect = 9.200e-41
Identity = 69/90 (76.67%), Postives = 81/90 (90.00%), Query Frame = 1 
Query:    4 RGRGKSAAIGLCLAGAIAYGYSNIFVTAPSPENLSTVFEFVLKGFDLLHFSDHLDYEVIQSTNPAFNRAVVRVNVFKDHRQTIQYIQPHD 273
            RGRGKSAA+GL +AGAIA+ YSNIFVT+PSPENL T+FEF+LKGFD LH+ +HLDYE+IQSTNP FN+AVVR+NVF DHRQT+QYI P D
Sbjct:  284 RGRGKSAALGLAIAGAIAFNYSNIFVTSPSPENLKTLFEFILKGFDALHYQEHLDYEIIQSTNPEFNKAVVRINVFHDHRQTVQYIHPTD 373
[Close]
BLAST of mRNA_H-elongata_contig132108.2304.1 vs. uniprot
Match: A0A6A4A0K6_9STRA (RNA cytidine acetyltransferase n=7 Tax=Peronosporaceae TaxID=4777 RepID=A0A6A4A0K6_9STRA)

HSP 1 Score: 152 bits (384), Expect = 9.220e-41
Identity = 71/99 (71.72%), Postives = 84/99 (84.85%), Query Frame = 1 
Query:    4 RGRGKSAAIGLCLAGAIAYGYSNIFVTAPSPENLSTVFEFVLKGFDLLHFSDHLDYEVIQSTNPAFNRAVVRVNVFKDHRQTIQYIQP--HDRFGWVRL 294
            RGRGKSAA+G+ LAGA+AYGYSNIFVTAP+PENL TVF+FV KGFD L + +HLDYEV+QSTNP FN AVVRVN+F++HRQTIQYIQP  H++     L
Sbjct:  286 RGRGKSAALGMALAGAVAYGYSNIFVTAPTPENLKTVFDFVFKGFDALKYKEHLDYEVVQSTNPEFNHAVVRVNIFREHRQTIQYIQPTHHEKLAQAEL 384
[Close]
BLAST of mRNA_H-elongata_contig132108.2304.1 vs. uniprot
Match: A0A7J7W8C9_RHIFE (N-acetyltransferase 10 n=1 Tax=Rhinolophus ferrumequinum TaxID=59479 RepID=A0A7J7W8C9_RHIFE)

HSP 1 Score: 147 bits (372), Expect = 1.040e-40
Identity = 69/98 (70.41%), Postives = 84/98 (85.71%), Query Frame = 1 
Query:    4 RGRGKSAAIGLCLAGAIAYGYSNIFVTAPSPENLSTVFEFVLKGFDLLHFSDHLDYEVIQSTNPAFNRAVVRVNVFKDHRQTIQYIQPHDRFGWVRLG 297
            RGRGKSAA+GL +AGA+A+GYSNIFVT+PSP+NL T+FEFV KGFD L + +HLDYE+IQS NP FN+AV+RVNVF++HRQTIQYI P D    V+LG
Sbjct:  286 RGRGKSAALGLAIAGAVAFGYSNIFVTSPSPDNLHTLFEFVFKGFDALQYQEHLDYEIIQSLNPEFNKAVIRVNVFREHRQTIQYIHPADA---VKLG 380
[Close]
BLAST of mRNA_H-elongata_contig132108.2304.1 vs. uniprot
Match: D8QTH4_SELML (RNA cytidine acetyltransferase n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QTH4_SELML)

HSP 1 Score: 152 bits (383), Expect = 1.250e-40
Identity = 68/91 (74.73%), Postives = 83/91 (91.21%), Query Frame = 1 
Query:    1 NRGRGKSAAIGLCLAGAIAYGYSNIFVTAPSPENLSTVFEFVLKGFDLLHFSDHLDYEVIQSTNPAFNRAVVRVNVFKDHRQTIQYIQPHD 273
            +RGRGKSAA+GL +AGA+A+GYSNIFVTAPSPENL T+FEFV KGFD L + +H+DY+++QSTNPAFN+AVVRVN+F+ HRQTIQYIQP D
Sbjct:  284 SRGRGKSAALGLAIAGAVAFGYSNIFVTAPSPENLKTLFEFVCKGFDALEYKEHIDYDLVQSTNPAFNKAVVRVNIFRQHRQTIQYIQPQD 374
[Close]
BLAST of mRNA_H-elongata_contig132108.2304.1 vs. uniprot
Match: M4BKY4_HYAAE (RNA cytidine acetyltransferase n=11 Tax=Peronosporaceae TaxID=4777 RepID=M4BKY4_HYAAE)

HSP 1 Score: 152 bits (383), Expect = 1.260e-40
Identity = 70/99 (70.71%), Postives = 84/99 (84.85%), Query Frame = 1 
Query:    4 RGRGKSAAIGLCLAGAIAYGYSNIFVTAPSPENLSTVFEFVLKGFDLLHFSDHLDYEVIQSTNPAFNRAVVRVNVFKDHRQTIQYIQP--HDRFGWVRL 294
            RGRGKSAA+G+ LAGA+AYGYSNIFVTAP+PENL TVF+FV KGFD L + +HLDYEV+QSTNP FN AV+RVN+F++HRQTIQYIQP  H++     L
Sbjct:  286 RGRGKSAALGMALAGAVAYGYSNIFVTAPTPENLKTVFDFVFKGFDALKYKEHLDYEVVQSTNPEFNHAVIRVNIFREHRQTIQYIQPTHHEKLAQAEL 384
[Close]
BLAST of mRNA_H-elongata_contig132108.2304.1 vs. uniprot
Match: A0A3R7H8G0_9STRA (RNA cytidine acetyltransferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H8G0_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.730e-40
Identity = 70/99 (70.71%), Postives = 84/99 (84.85%), Query Frame = 1 
Query:    4 RGRGKSAAIGLCLAGAIAYGYSNIFVTAPSPENLSTVFEFVLKGFDLLHFSDHLDYEVIQSTNPAFNRAVVRVNVFKDHRQTIQYIQP--HDRFGWVRL 294
            RGRGKSAA+G+ LAGA+AYGYSNIFVTAP+PENL TVF+FV KGFD L + +HLDYE++QSTNP FN AVVRVN+F++HRQTIQYIQP  H++     L
Sbjct:  735 RGRGKSAALGMSLAGAVAYGYSNIFVTAPTPENLKTVFDFVFKGFDALKYKEHLDYEIVQSTNPEFNNAVVRVNIFREHRQTIQYIQPTHHEKLAQAEL 833
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132108.2304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4N4_9PHAE2.780e-5196.70RNA cytidine acetyltransferase n=2 Tax=Ectocarpus ... [more]
A0A835Z409_9STRA7.860e-4786.81RNA cytidine acetyltransferase n=1 Tax=Tribonema m... [more]
UPI00052F389B3.000e-4171.43N-acetyltransferase 10-like isoform X1 n=2 Tax=Tin... [more]
A0A484DU58_BRELC6.760e-4170.71RNA cytidine acetyltransferase n=1 Tax=Bremia lact... [more]
UPI000C6D81989.200e-4176.67RNA cytidine acetyltransferase-like n=1 Tax=Centru... [more]
A0A6A4A0K6_9STRA9.220e-4171.72RNA cytidine acetyltransferase n=7 Tax=Peronospora... [more]
A0A7J7W8C9_RHIFE1.040e-4070.41N-acetyltransferase 10 n=1 Tax=Rhinolophus ferrume... [more]
D8QTH4_SELML1.250e-4074.73RNA cytidine acetyltransferase n=4 Tax=Selaginella... [more]
M4BKY4_HYAAE1.260e-4070.71RNA cytidine acetyltransferase n=11 Tax=Peronospor... [more]
A0A3R7H8G0_9STRA1.730e-4070.71RNA cytidine acetyltransferase n=3 Tax=Phytophthor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132108contigH-elongata_contig132108:616..1553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.7
Seed ortholog evalue1.1e-44
Seed eggNOG ortholog2880.D7FZ70
Preferred nameNAT10
KEGG koko:K14521
KEGG Pathwayko03008,map03008
GOsGO:0000049,GO:0000154,GO:0000166,GO:0002097,GO:0002101,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0005730,GO:0006139,GO:0006325,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0008033,GO:0008080,GO:0008144,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010556,GO:0010558,GO:0010605,GO:0010639,GO:0016043,GO:0016070,GO:0016072,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0017076,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022613,GO:0030490,GO:0030496,GO:0030554,GO:0030684,GO:0030686,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033044,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0036211,GO:0042254,GO:0042274,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051276,GO:0051391,GO:0051392,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070182,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1904356,GO:1904357,GO:1904812,GO:1990882,GO:1990883,GO:1990884,GO:1990904,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
EggNOG free text desc.tRNA N-acetyltransferase activity
EggNOG OGsCOG1444@1,KOG2036@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Hectar predicted targeting categorysignal peptide
Exons2
Model size303
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929784.3375158-CDS-H-elongata_contig132108:615..7701622929784.3375158-CDS-H-elongata_contig132108:615..770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132108 616..770 +
1691679156.2874382-CDS-H-elongata_contig132108:615..7701691679156.2874382-CDS-H-elongata_contig132108:615..770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132108 616..770 +
1622929784.3533025-CDS-H-elongata_contig132108:1405..15531622929784.3533025-CDS-H-elongata_contig132108:1405..1553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132108 1406..1553 +
1691679156.2990167-CDS-H-elongata_contig132108:1405..15531691679156.2990167-CDS-H-elongata_contig132108:1405..1553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132108 1406..1553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132108.2304.1prot_H-elongata_contig132108.2304.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132108 616..1553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132108.2304.1

>prot_H-elongata_contig132108.2304.1 ID=prot_H-elongata_contig132108.2304.1|Name=mRNA_H-elongata_contig132108.2304.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
NRGRGKSAAIGLCLAGAIAYGYSNIFVTAPSPENLSTVFEFVLKGFDLLH
FSDHLDYEVIQSTNPAFNRAVVRVNVFKDHRQTIQYIQPHDRFGWVRLGF
*
back to top

mRNA from alignment at H-elongata_contig132108:616..1553+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132108.2304.1 ID=mRNA_H-elongata_contig132108.2304.1|Name=mRNA_H-elongata_contig132108.2304.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=938bp|location=Sequence derived from alignment at H-elongata_contig132108:616..1553+ (Himanthalia elongata Himel1 dioecious)
AACAGGGGGCGAGGCAAGTCAGCGGCGATCGGGCTCTGCCTAGCGGGTGC
CATAGCCTACGGCTATAGCAACATCTTCGTGACCGCGCCGTCTCCGGAAA
ACCTCTCTACCGTGTTCGAGTTCGTCCTCAAGGGTTTCGATCTCCTTCAC
TTCAGGTTGGCGTTTTCGACGCGGGAGTTGTTGTTTCTTCTGACTCGGCG
CCTGTGGCTTGGATAGATCCGATCGAGTTTTTACTCGATGACGTGGGCCC
TTCGTGATTACTCTCGCAAAAGTATATACTGATACTGGTTCATACATTTT
TTAGCACACTGGGAAGACTTGTGGAGGTTGCAACTTTACCGCACCGGTTT
CCATGTATAGAGGCGTTACACCCCGGGGGTTAAGGGTCCAGTATCACCAC
TCCGTCGATATTTTTCGACTTTTCCGCTACCGTGGGGATACGGACATATC
CTAGGGTATGTTTTATTGGGGGGGGGTTATAAATATATATATATTAGTAT
CGATCTTTCCAAAATTGTACTCGATAGTGACTTATGTATAATGATATATA
TATATATATATAATATTTAATAGCTTGGTATCTTGGGGACGCGGTGTGTA
AGGAGACGTTTCCGATTCGTAGGTCTTGAGCATGTCCCCTCAGGGGGTTC
CACCCGTCCCTTCGAGAATATCAGTGCGCGGCTGCGTAGAGCTACTGTAA
TTAAAGAATCCCCTGTTTGTTCCAATATCAAGATACAATGTAACAACTAA
ATGTATTTTATGTGTGTATGTGTGTGTGTGTGTGTGTCAGCGACCATCTG
GATTACGAGGTCATCCAGAGTACCAATCCGGCCTTCAACCGTGCCGTAGT
CCGAGTGAACGTTTTCAAGGACCACCGGCAGACGATTCAGTACATACAAC
CGCACGACAGGTTTGGTTGGGTTAGGTTGGGTTTTTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig132108:616..1553+

>mRNA_H-elongata_contig132108.2304.1 ID=mRNA_H-elongata_contig132108.2304.1|Name=mRNA_H-elongata_contig132108.2304.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig132108:616..1553+ (Himanthalia elongata Himel1 dioecious)
AACAGGGGGCGAGGCAAGTCAGCGGCGATCGGGCTCTGCCTAGCGGGTGC
CATAGCCTACGGCTATAGCAACATCTTCGTGACCGCGCCGTCTCCGGAAA
ACCTCTCTACCGTGTTCGAGTTCGTCCTCAAGGGTTTCGATCTCCTTCAC
TTCAGAACAGGGGGCGAGGCAAGTCAGCGGCGATCGGGCTCTGCCTAGCG
GGTGCCATAGCCTACGGCTATAGCAACATCTTCGTGACCGCGCCGTCTCC
GGAAAACCTCTCTACCGTGTTCGAGTTCGTCCTCAAGGGTTTCGATCTCC
TTCACTTCAGCGACCATCTGGATTACGAGGTCATCCAGAGTACCAATCCG
GCCTTCAACCGTGCCGTAGTCCGAGTGAACGTTTTCAAGGACCACCGGCA
GACGATTCAGTACATACAACCGCACGACAGGTTTGGTTGGGTTAGGTTGG
GTTTTTAGCGACCATCTGGATTACGAGGTCATCCAGAGTACCAATCCGGC
CTTCAACCGTGCCGTAGTCCGAGTGAACGTTTTCAAGGACCACCGGCAGA
CGATTCAGTACATACAACCGCACGACAGGTTTGGTTGGGTTAGGTTGGGT
TTTTAG
back to top