mRNA_H-elongata_contig13203.2301.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13203.2301.1
Unique NamemRNA_H-elongata_contig13203.2301.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13203.2301.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 8.270e-25
Identity = 53/79 (67.09%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    1 TSLMPGKLFHDMQATIRAKFYLVSEAQRCCPNEKLYL*MAGTDGLESLFVVVRTLTHARNVDAKELSERFSSANGVEQV 237
            T   PG+L HD+QATIR  FY+V EAQ  CP E+LYL M GTDGLE+LF +VRTLTHA NVDAKE  ERF +  GVEQV
Sbjct:   76 TRFKPGQLDHDLQATIRLLFYVVLEAQVRCPRERLYLWMIGTDGLENLFAIVRTLTHASNVDAKEAIERFGAVIGVEQV 154          
BLAST of mRNA_H-elongata_contig13203.2301.1 vs. uniprot
Match: A0A165WRF7_9AGAM (Uncharacterized protein n=1 Tax=Sistotremastrum suecicum HHB10207 ss-3 TaxID=1314776 RepID=A0A165WRF7_9AGAM)

HSP 1 Score: 64.3 bits (155), Expect = 5.530e-10
Identity = 35/94 (37.23%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    1 TSLMPGKLFHDMQATIRAKFYLVSEAQRCCPNEKLYL*MAGTDGLESLFVVVRTLT-HARNVDAKELSERFSSANGVEQVYEKHPQLRRTSKRL 279
            T  MP +L+ D    I+  ++ V++ Q   P+ + ++ + GTD LESLF +VRT+T +  N D  +LS R SSA    +++ KHP   R+ +RL
Sbjct:  466 TKFMPTQLYADQMIMIKNVYFCVAKYQAYNPDSQFHIILLGTDRLESLFGMVRTMTGNDSNADLYQLSHRLSSAAHCSEIFAKHPDWDRSPRRL 559          
BLAST of mRNA_H-elongata_contig13203.2301.1 vs. uniprot
Match: A0A165LB28_EXIGL (Uncharacterized protein (Fragment) n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165LB28_EXIGL)

HSP 1 Score: 61.6 bits (148), Expect = 5.080e-9
Identity = 35/94 (37.23%), Postives = 55/94 (58.51%), Query Frame = 1
Query:    1 TSLMPGKLFHDMQATIRAKFYLVSEAQRCCPNEKLYL*MAGTDGLESLFVVVRTLT-HARNVDAKELSERFSSANGVEQVYEKHPQLRRTSKRL 279
            + LMP +L+ D+   I+  ++ V++AQR  PN   ++ + GTD LE LF ++RT+  +  NVDA +LS R +    V  +  K+P   R  KRL
Sbjct:  866 SKLMPTQLYVDIMIMIKNVYFCVAKAQRDDPNGSFWVILLGTDRLEELFGILRTMIGNDANVDALQLSTRVTGTTEVSTILAKYPHWDRAPKRL 959          
BLAST of mRNA_H-elongata_contig13203.2301.1 vs. uniprot
Match: A0A8H6ZLW2_PLEOS (Uncharacterized protein n=1 Tax=Pleurotus ostreatus TaxID=5322 RepID=A0A8H6ZLW2_PLEOS)

HSP 1 Score: 61.2 bits (147), Expect = 6.700e-9
Identity = 32/94 (34.04%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    1 TSLMPGKLFHDMQATIRAKFYLVSEAQRCCPNEKLYL*MAGTDGLESLFVVVRTLT-HARNVDAKELSERFSSANGVEQVYEKHPQLRRTSKRL 279
            T LMP +L+ DM   ++  ++ V++A+   P+ + ++ + GTD LE+LF ++RT+  +  NVDA +L  R +    V  +  KHP+  R  +RL
Sbjct:  309 TKLMPTQLYIDMMIMVKNVYFCVAKAKVDAPDSQFWITLLGTDRLETLFGILRTMIGNDANVDAYQLGSRLTGTAEVSTILAKHPEWDRAPRRL 402          
BLAST of mRNA_H-elongata_contig13203.2301.1 vs. uniprot
Match: A0A8H7DT02_PLEOS (PHD domain-containing protein n=1 Tax=Pleurotus ostreatus TaxID=5322 RepID=A0A8H7DT02_PLEOS)

HSP 1 Score: 61.2 bits (147), Expect = 6.940e-9
Identity = 32/94 (34.04%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    1 TSLMPGKLFHDMQATIRAKFYLVSEAQRCCPNEKLYL*MAGTDGLESLFVVVRTLT-HARNVDAKELSERFSSANGVEQVYEKHPQLRRTSKRL 279
            T LMP +L+ DM   ++  ++ V++A+   P+ + ++ + GTD LE+LF ++RT+  +  NVDA +L  R +    V  +  KHP+  R  +RL
Sbjct:  620 TKLMPTQLYIDMMIMVKNVYFCVAKAKVDAPDSQFWITLLGTDRLETLFGILRTMIGNDANVDAYQLGSRLTGTAEVSTILAKHPEWDRAPRRL 713          
BLAST of mRNA_H-elongata_contig13203.2301.1 vs. uniprot
Match: A0A5C3N1J9_9AGAM (PHD domain-containing protein n=1 Tax=Heliocybe sulcata TaxID=5364 RepID=A0A5C3N1J9_9AGAM)

HSP 1 Score: 59.7 bits (143), Expect = 2.430e-8
Identity = 31/91 (34.07%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   10 MPGKLFHDMQATIRAKFYLVSEAQRCCPNEKLYL*MAGTDGLESLFVVVRTLT-HARNVDAKELSERFSSANGVEQVYEKHPQLRRTSKRL 279
            +P +L++D+   I+  ++ V++A    PN K YL + GTD LE+LF +VRT+  +  N D  +LS R ++A+    + + HP+  +  +RL
Sbjct:  861 VPVQLYYDVMTMIKNAYFCVAKAMSANPNGKFYLILLGTDSLETLFGIVRTMVGNDTNADQLQLSSRLTTASLCSSLLQLHPEWDQGPRRL 951          
BLAST of mRNA_H-elongata_contig13203.2301.1 vs. uniprot
Match: A0A5C3MMY6_9AGAM (Uncharacterized protein n=1 Tax=Heliocybe sulcata TaxID=5364 RepID=A0A5C3MMY6_9AGAM)

HSP 1 Score: 58.2 bits (139), Expect = 8.290e-8
Identity = 32/91 (35.16%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   10 MPGKLFHDMQATIRAKFYLVSEAQRCCPNEKLYL*MAGTDGLESLFVVVRTLT-HARNVDAKELSERFSSANGVEQVYEKHPQLRRTSKRL 279
            MP +L++D+ + I+  ++ V++A    P+ K YL + GTD LE+LF +VRT+T +  N D  +L+ R ++A+    + + HP   R  +RL
Sbjct:  592 MPVQLYYDVVSMIKNAYFCVAKAIVANPDGKFYLILLGTDSLETLFGIVRTMTGNDTNADQLQLASRLTTASLCSSLLQLHPTWDRGPRRL 682          
BLAST of mRNA_H-elongata_contig13203.2301.1 vs. uniprot
Match: A0A5C3N381_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Heliocybe sulcata TaxID=5364 RepID=A0A5C3N381_9AGAM)

HSP 1 Score: 55.5 bits (132), Expect = 1.040e-7
Identity = 29/86 (33.72%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   25 FHDMQATIRAKFYLVSEAQRCCPNEKLYL*MAGTDGLESLFVVVRTLT-HARNVDAKELSERFSSANGVEQVYEKHPQLRRTSKRL 279
            ++D+   I+  ++ V++A    PN K YL + GTD LE+LF +VRT+  +  N D  +LS R ++A+    + + HP+  +  +RL
Sbjct:    1 YYDVMTMIKNAYFCVAKAMSANPNGKFYLILLGTDSLETLFGIVRTMVGNDTNTDQLQLSSRLTTASLCSSLLQLHPEWDQGPRRL 86          
BLAST of mRNA_H-elongata_contig13203.2301.1 vs. uniprot
Match: A0A0W0FA72_9AGAR (PHD domain-containing protein n=1 Tax=Moniliophthora roreri TaxID=221103 RepID=A0A0W0FA72_9AGAR)

HSP 1 Score: 57.0 bits (136), Expect = 2.080e-7
Identity = 32/91 (35.16%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   10 MPGKLFHDMQATIRAKFYLVSEAQRCCPNEKLYL*MAGTDGLESLFVVVRTLTHAR-NVDAKELSERFSSANGVEQVYEKHPQLRRTSKRL 279
            +P  L+ D+Q  I+  F+ V++A+R  P+ + ++ + GTD LE LF +VRTL     N+D  +L++R + A  V  +   HP+  +T +RL
Sbjct:  268 LPTTLYVDIQIMIKNVFFCVAKAKRDDPDGEFFIILLGTDRLEILFGIVRTLVANNCNLDILQLADRLNGALEVANILALHPEWDKTPRRL 358          
BLAST of mRNA_H-elongata_contig13203.2301.1 vs. uniprot
Match: V2WNZ6_MONRO (Uncharacterized protein n=1 Tax=Moniliophthora roreri (strain MCA 2997) TaxID=1381753 RepID=V2WNZ6_MONRO)

HSP 1 Score: 57.0 bits (136), Expect = 2.120e-7
Identity = 32/91 (35.16%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   10 MPGKLFHDMQATIRAKFYLVSEAQRCCPNEKLYL*MAGTDGLESLFVVVRTLTHAR-NVDAKELSERFSSANGVEQVYEKHPQLRRTSKRL 279
            +P  L+ D+Q  I+  F+ V++A+R  P+ + ++ + GTD LE LF +VRTL     N+D  +L++R + A  V  +   HP+  +T +RL
Sbjct:  268 LPTTLYVDIQIMIKNVFFCVAKAKRDDPDGEFFIILLGTDRLEILFGIVRTLVANNCNLDILQLADRLNGALEVANILALHPEWDKTPRRL 358          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13203.2301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2E6_9PHAE8.270e-2567.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A165WRF7_9AGAM5.530e-1037.23Uncharacterized protein n=1 Tax=Sistotremastrum su... [more]
A0A165LB28_EXIGL5.080e-937.23Uncharacterized protein (Fragment) n=1 Tax=Exidia ... [more]
A0A8H6ZLW2_PLEOS6.700e-934.04Uncharacterized protein n=1 Tax=Pleurotus ostreatu... [more]
A0A8H7DT02_PLEOS6.940e-934.04PHD domain-containing protein n=1 Tax=Pleurotus os... [more]
A0A5C3N1J9_9AGAM2.430e-834.07PHD domain-containing protein n=1 Tax=Heliocybe su... [more]
A0A5C3MMY6_9AGAM8.290e-835.16Uncharacterized protein n=1 Tax=Heliocybe sulcata ... [more]
A0A5C3N381_9AGAM1.040e-733.72Uncharacterized protein (Fragment) n=1 Tax=Heliocy... [more]
A0A0W0FA72_9AGAR2.080e-735.16PHD domain-containing protein n=1 Tax=Moniliophtho... [more]
V2WNZ6_MONRO2.120e-735.16Uncharacterized protein n=1 Tax=Moniliophthora ror... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13203contigH-elongata_contig13203:2652..2930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size279
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929783.9671087-CDS-H-elongata_contig13203:2651..28161622929783.9671087-CDS-H-elongata_contig13203:2651..2816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13203 2652..2816 -
1691679156.1353388-CDS-H-elongata_contig13203:2651..28161691679156.1353388-CDS-H-elongata_contig13203:2651..2816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13203 2652..2816 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929783.9808507-UTR-H-elongata_contig13203:2816..29301622929783.9808507-UTR-H-elongata_contig13203:2816..2930Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13203 2817..2930 -
1691679156.1426768-UTR-H-elongata_contig13203:2816..29301691679156.1426768-UTR-H-elongata_contig13203:2816..2930Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13203 2817..2930 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13203.2301.1prot_H-elongata_contig13203.2301.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13203 2652..2816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13203.2301.1

>prot_H-elongata_contig13203.2301.1 ID=prot_H-elongata_contig13203.2301.1|Name=mRNA_H-elongata_contig13203.2301.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
MAGTDGLESLFVVVRTLTHARNVDAKELSERFSSANGVEQVYEKHPQLRR
TSKRL
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mRNA from alignment at H-elongata_contig13203:2652..2930-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13203.2301.1 ID=mRNA_H-elongata_contig13203.2301.1|Name=mRNA_H-elongata_contig13203.2301.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at H-elongata_contig13203:2652..2930- (Himanthalia elongata Himel1 dioecious)
ACGAGCTTGATGCCGGGGAAGCTCTTTCACGACATGCAGGCGACCATCAG GGCTAAGTTCTACCTAGTGAGCGAAGCGCAGCGTTGTTGTCCGAACGAAA AGCTGTACCTTTGAATGGCTGGGACTGATGGACTAGAAAGCCTGTTCGTC GTGGTACGCACCCTGACGCACGCCCGGAACGTCGACGCGAAAGAGCTGAG TGAGCGGTTCAGCAGTGCAAACGGGGTGGAGCAGGTGTACGAGAAACATC CGCAACTGAGGCGCACCTCGAAGCGCCTG
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Coding sequence (CDS) from alignment at H-elongata_contig13203:2652..2930-

>mRNA_H-elongata_contig13203.2301.1 ID=mRNA_H-elongata_contig13203.2301.1|Name=mRNA_H-elongata_contig13203.2301.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig13203:2652..2930- (Himanthalia elongata Himel1 dioecious)
ATGGCTGGGACTGATGGACTAGAAAGCCTGTTCGTCGTGGTACGCACCCT
GACGCACGCCCGGAACGTCGACGCGAAAGAGCTGAGTGAGCGGTTCAGCA
GTGCAAACGGGGTGGAGCAGGTGTACGAGAAACATCCGCAACTGAGGCGC
ACCTCGAAGCGCCTGATGGCTGGGACTGATGGACTAGAAAGCCTGTTCGT
CGTGGTACGCACCCTGACGCACGCCCGGAACGTCGACGCGAAAGAGCTGA
GTGAGCGGTTCAGCAGTGCAAACGGGGTGGAGCAGGTGTACGAGAAACAT
CCGCAACTGAGGCGCACCTCGAAGCGCCTG
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