mRNA_H-elongata_contig132019.2300.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132019.2300.1
Unique NamemRNA_H-elongata_contig132019.2300.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig132019.2300.1 vs. uniprot
Match: D8LLY4_ECTSI (MSP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLY4_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 2.760e-28
Identity = 63/105 (60.00%), Postives = 81/105 (77.14%), Query Frame = 1 
Query:    1 VWEDAKARVQQKKLIVGFSLPQAGTGSAAATVANLKQASNGIKEAVSG--GRSRFGARGEVGVRGEGSGTDGSDLSQDQMWAQVTALRQKYDDLVSFTINLTAEK 309
            +W++AKARVQQKKL+V F+ P+     ++A    LKQASNG+++A++G   RSRF    E G++G G+G DGSD+SQDQMWAQ   LR+KYDDLVSFTINLTAEK
Sbjct:  121 LWKEAKARVQQKKLVVHFTFPRPSIPPSSAET--LKQASNGVRDAIAGDSSRSRFATGTEDGLQG-GAGGDGSDMSQDQMWAQAAELRRKYDDLVSFTINLTAEK 222
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132019.2300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLY4_ECTSI2.760e-2860.00MSP domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132019contigH-elongata_contig132019:319..1630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue2.4e-23
Seed eggNOG ortholog2880.D8LLY4
KEGG koko:K06096
KEGG Pathwayko04979,map04979
EggNOG free text desc.oxidosqualene cyclase activity
EggNOG OGsCOG5066@1,KOG0439@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMSP domain
Ec32 orthologEc-14_002110.1
Exons3
Model size309
Cds size309
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132019.2300.1prot_H-elongata_contig132019.2300.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132019 319..1630 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929783.8918633-CDS-H-elongata_contig132019:318..4091622929783.8918633-CDS-H-elongata_contig132019:318..409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132019 319..409 -
1691679156.1058478-CDS-H-elongata_contig132019:318..4091691679156.1058478-CDS-H-elongata_contig132019:318..409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132019 319..409 -
1622929783.910028-CDS-H-elongata_contig132019:720..8271622929783.910028-CDS-H-elongata_contig132019:720..827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132019 721..827 -
1691679156.1171412-CDS-H-elongata_contig132019:720..8271691679156.1171412-CDS-H-elongata_contig132019:720..827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132019 721..827 -
1622929783.9280407-CDS-H-elongata_contig132019:1519..16301622929783.9280407-CDS-H-elongata_contig132019:1519..1630Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132019 1520..1630 -
1691679156.1277375-CDS-H-elongata_contig132019:1519..16301691679156.1277375-CDS-H-elongata_contig132019:1519..1630Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132019 1520..1630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132019.2300.1

>prot_H-elongata_contig132019.2300.1 ID=prot_H-elongata_contig132019.2300.1|Name=mRNA_H-elongata_contig132019.2300.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
VWEDAKARVQQKKLIVGFSLPQAGTGSAAATVANLKQASNGIKEAVSGGR
SRFGARGEVGVRGEGSGTDGSDLSQDQMWAQVTALRQKYDDLVSFTINLT
AEK
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mRNA from alignment at H-elongata_contig132019:319..1630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132019.2300.1 ID=mRNA_H-elongata_contig132019.2300.1|Name=mRNA_H-elongata_contig132019.2300.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1312bp|location=Sequence derived from alignment at H-elongata_contig132019:319..1630- (Himanthalia elongata Himel1 dioecious)
GTGTGGGAGGATGCCAAGGCAAGGGTGCAGCAAAAGAAGCTGATCGTGGG
GTTCTCCCTTCCTCAGGCTGGTACAGGGTCGGCGGCAGCTACCGTTGCCA
ACCTTAAGCAGGTTCGTCCGTACTGTAGCCGCGCCGTTCGTTGTTTGGCG
AGGAAATATTTCATTGGTTACGTACGGAGAACGATCTGTTTTTTACATCC
TAAATTCAATACAACAATTGAAATCCAGTTCTTAAAAGGGTTAATATAGT
ACGTACCTGTTAAGGAGGTAGAGAGATGGGGGAGTGGACTGTCTCGTCGC
TGTGTGTAGCTAGAAGTCAAGATGAGACTATGATGGGGAGTGGTACGATA
TCCGGAGAAGGGAAAACGGTTGTGCACCGACAATGTGGTTGTGTGTGTGT
GTCATGACATATATATTGATTAGAGAGCGATATCCATCTTGTTTCTTTAC
ACCTTTTCCTCTTTTTTTTTTCTTCTTTCTCTTTTTCCTTCCTCTCTTTC
TTATTTATTTCCTCTCTTTGTCCTTTCTTTTTTTTCCTCTTTTTTTTTCC
CTCTTTTTTGTTTTGTTTAATAAACATACTGTACGTATAAACCCATTTCA
AACCCTTCGAACATCCATACTTTCCTCCTCTTTTTTTCTTCTTCTATTCT
TTTCCTCCGTTTTTTCTTCTTTTTCTTTTCTCTATTTTAAAATATTTTGA
TGCAATTCATCACACGCCGGGTGGACATGCATGCTCAACACAATGTTCAG
GCCAATCACTTCTTTCTCTCTTCCCACCGTTACACCATCATCTGATAATG
CAGGCATCTAATGGAATCAAGGAGGCCGTCAGCGGCGGAAGGTCGCGCTT
CGGGGCGCGGGGGGAAGTAGGCGTTCGCGGGGAGGGAAGTGGGACCGACG
GCAGCGATCTGTGAGTCACACCCCGGAGCGCCCTCTTCTTAACACCCATG
GCGTGGATCACACTACTACTGCGCACGCGGATAGACCTCGAATGCCCGCG
ACGTGGTTTGGTGTGCTATTGCTTCGCGGTGTTTTCTGAATGTGTTTTTT
TCGAGGGACGTCTTCGCCTTAGGCTCGGACAACCAGCCTAGATAGCCTGA
GACGTTTTTCTCCTTGCGATTTTACCGCCCCCACCGGTATACGATCCTCG
CATTCGTTGTTGTTGCTGTTGCTGGTGGTGGTGGTGGTTCTCGTCTTGTC
GACCGTGTCGTGCAGCAGCAGGTCGCAGGATCAAATGTGGGCTCAAGTAA
CGGCGCTTCGACAAAAGTACGATGACCTGGTGTCGTTCACAATCAATCTC
ACCGCGGAAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig132019:319..1630-

>mRNA_H-elongata_contig132019.2300.1 ID=mRNA_H-elongata_contig132019.2300.1|Name=mRNA_H-elongata_contig132019.2300.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig132019:319..1630- (Himanthalia elongata Himel1 dioecious)
GTGTGGGAGGATGCCAAGGCAAGGGTGCAGCAAAAGAAGCTGATCGTGGG
GTTCTCCCTTCCTCAGGCTGGTACAGGGTCGGCGGCAGCTACCGTTGCCA
ACCTTAAGCAGGTGTGGGAGGATGCCAAGGCAAGGGTGCAGCAAAAGAAG
CTGATCGTGGGGTTCTCCCTTCCTCAGGCTGGTACAGGGTCGGCGGCAGC
TACCGTTGCCAACCTTAAGCAGGCATCTAATGGAATCAAGGAGGCCGTCA
GCGGCGGAAGGTCGCGCTTCGGGGCGCGGGGGGAAGTAGGCGTTCGCGGG
GAGGGAAGTGGGACCGACGGCAGCGATCTGCATCTAATGGAATCAAGGAG
GCCGTCAGCGGCGGAAGGTCGCGCTTCGGGGCGCGGGGGGAAGTAGGCGT
TCGCGGGGAGGGAAGTGGGACCGACGGCAGCGATCTGTCGCAGGATCAAA
TGTGGGCTCAAGTAACGGCGCTTCGACAAAAGTACGATGACCTGGTGTCG
TTCACAATCAATCTCACCGCGGAAAAGGTCGCAGGATCAAATGTGGGCTC
AAGTAACGGCGCTTCGACAAAAGTACGATGACCTGGTGTCGTTCACAATC
AATCTCACCGCGGAAAAG
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