mRNA_H-elongata_contig131951.2294.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131951.2294.1
Unique NamemRNA_H-elongata_contig131951.2294.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig131951.2294.1 vs. uniprot
Match: A0A6H5L5V9_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V9_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 3.310e-31
Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:    1 GLDYVVAHLIKCLNTDANRGFSSNPERVFSVLIGLFQDYGLQHIYCEDLEALQVMLGVLDLLIEEYLPRLHRHFQAQ 231
            GLDYVVAHLIKCL TD +RGF+S+PERVF V++GLF+DYGL+HIY EDLE LQ+MLGVLD LIE  LPRLH HF+ Q
Sbjct: 1959 GLDYVVAHLIKCLGTDCHRGFASDPERVFRVILGLFRDYGLEHIYSEDLETLQLMLGVLDHLIETRLPRLHEHFREQ 2035
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BLAST of mRNA_H-elongata_contig131951.2294.1 vs. uniprot
Match: D8LIK8_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK8_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 4.510e-31
Identity = 57/77 (74.03%), Postives = 68/77 (88.31%), Query Frame = 1 
Query:    1 GLDYVVAHLIKCLNTDANRGFSSNPERVFSVLIGLFQDYGLQHIYCEDLEALQVMLGVLDLLIEEYLPRLHRHFQAQ 231
            GLDYVVAHLIKCL TD +RGF+S+P+RVF V++GLF+DYGL+HIY EDLE LQ+MLGVLD LIE  LPRLH+HF+ Q
Sbjct: 1660 GLDYVVAHLIKCLGTDCHRGFASDPDRVFRVILGLFRDYGLEHIYSEDLETLQLMLGVLDHLIETRLPRLHKHFREQ 1736
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BLAST of mRNA_H-elongata_contig131951.2294.1 vs. uniprot
Match: A0A820U3L4_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820U3L4_9BILA)

HSP 1 Score: 51.2 bits (121), Expect = 1.110e-5
Identity = 23/52 (44.23%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   76 ERVFSVLIGLFQDYGLQHIYCEDLEALQVMLGVLDLLIEEYLPRLHRHFQAQ 231
            E  F+VL+ + QDY ++ +Y  D+  L + +  L+ LI+EYLP L+RHFQA+
Sbjct:  200 EEAFAVLVSIMQDYTMREMYKPDMYHLGLCMYQLECLIQEYLPDLYRHFQAE 251
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BLAST of mRNA_H-elongata_contig131951.2294.1 vs. uniprot
Match: A0A817RRT4_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817RRT4_9BILA)

HSP 1 Score: 51.2 bits (121), Expect = 1.220e-5
Identity = 23/52 (44.23%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   76 ERVFSVLIGLFQDYGLQHIYCEDLEALQVMLGVLDLLIEEYLPRLHRHFQAQ 231
            E  F+VL+ + QDY ++ +Y  D+  L + +  L+ LI+EYLP L+RHFQA+
Sbjct:  200 EEAFAVLVSIMQDYTMREMYKPDMYHLGLCMYQLECLIQEYLPDLYRHFQAE 251
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BLAST of mRNA_H-elongata_contig131951.2294.1 vs. uniprot
Match: A0A817HP94_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817HP94_9BILA)

HSP 1 Score: 51.2 bits (121), Expect = 1.250e-5
Identity = 23/52 (44.23%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   76 ERVFSVLIGLFQDYGLQHIYCEDLEALQVMLGVLDLLIEEYLPRLHRHFQAQ 231
            E  F+VL+ + QDY ++ +Y  D+  L + +  L+ LI+EYLP L+RHFQA+
Sbjct:  200 EEAFAVLVSIMQDYTMREMYKPDMYHLGLCMYQLECLIQEYLPDLYRHFQAE 251
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BLAST of mRNA_H-elongata_contig131951.2294.1 vs. uniprot
Match: A0A820VVR3_9BILA (Hypothetical protein n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A820VVR3_9BILA)

HSP 1 Score: 50.4 bits (119), Expect = 2.160e-5
Identity = 21/52 (40.38%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   76 ERVFSVLIGLFQDYGLQHIYCEDLEALQVMLGVLDLLIEEYLPRLHRHFQAQ 231
            E  F+VL+ + QDY ++ +Y  D+  L + +  L+ +I+E+LP L+RHFQA+
Sbjct:  202 EEAFAVLVSIMQDYSMRKMYKSDMYHLALHMYQLEYMIQEFLPELYRHFQAE 253
[Close]
BLAST of mRNA_H-elongata_contig131951.2294.1 vs. uniprot
Match: A0A815QZE9_9BILA (Hypothetical protein n=21 Tax=Rotaria TaxID=231623 RepID=A0A815QZE9_9BILA)

HSP 1 Score: 49.3 bits (116), Expect = 5.920e-5
Identity = 21/52 (40.38%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   76 ERVFSVLIGLFQDYGLQHIYCEDLEALQVMLGVLDLLIEEYLPRLHRHFQAQ 231
            E  F+VL+ + QDY ++ +Y  D+  L + +  L+ +I+E+LP L RHFQA+
Sbjct:  223 EEAFAVLVSIMQDYSMREMYKSDMYHLALRMYQLEYMIQEFLPELCRHFQAE 274
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131951.2294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L5V9_9PHAE3.310e-3175.32Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
D8LIK8_ECTSI4.510e-3174.03Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A820U3L4_9BILA1.110e-544.23Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A817RRT4_9BILA1.220e-544.23Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A817HP94_9BILA1.250e-544.23Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 ... [more]
A0A820VVR3_9BILA2.160e-540.38Hypothetical protein n=1 Tax=Rotaria socialis TaxI... [more]
A0A815QZE9_9BILA5.920e-540.38Hypothetical protein n=21 Tax=Rotaria TaxID=231623... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131951contigH-elongata_contig131951:168..785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.6
Seed ortholog evalue3.9e-26
Seed eggNOG ortholog2880.D8LIK8
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929783.3267212-CDS-H-elongata_contig131951:167..3171622929783.3267212-CDS-H-elongata_contig131951:167..317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131951 168..317 +
1691679155.9037862-CDS-H-elongata_contig131951:167..3171691679155.9037862-CDS-H-elongata_contig131951:167..317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131951 168..317 +
1622929783.38296-CDS-H-elongata_contig131951:704..7851622929783.38296-CDS-H-elongata_contig131951:704..785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131951 705..785 +
1691679155.9155536-CDS-H-elongata_contig131951:704..7851691679155.9155536-CDS-H-elongata_contig131951:704..785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131951 705..785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131951.2294.1prot_H-elongata_contig131951.2294.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131951 168..785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131951.2294.1

>prot_H-elongata_contig131951.2294.1 ID=prot_H-elongata_contig131951.2294.1|Name=mRNA_H-elongata_contig131951.2294.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
GLDYVVAHLIKCLNTDANRGFSSNPERVFSVLIGLFQDYGLQHIYCEDLE
ALQVMLGVLDLLIEEYLPRLHRHFQAQ
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mRNA from alignment at H-elongata_contig131951:168..785+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131951.2294.1 ID=mRNA_H-elongata_contig131951.2294.1|Name=mRNA_H-elongata_contig131951.2294.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=618bp|location=Sequence derived from alignment at H-elongata_contig131951:168..785+ (Himanthalia elongata Himel1 dioecious)
GGCCTGGACTACGTCGTCGCTCATCTGATCAAGTGCCTCAACACCGACGC
CAACCGGGGGTTTTCTTCCAACCCGGAACGCGTGTTTTCGGTGCTGATCG
GCTTGTTCCAAGACTACGGACTGCAGCACATCTACTGCGAAGATCTCGAA
GTGCGTGGGGAGAGATGGAGGAAGAGAGGGGGATGTTGTATAGAGGAGAG
GAGAAGGAGGGTTGGAGGGTAGGAATAATAGGAGAAAATCCCAGACGTAC
TTGCGCACGGAGCCGGAGGGGAGGGGAGGGGATGAAATGCTCCATCCGAA
GTCTGAAGTGTAGACACACTTTCGATTATTTGTTTGGAATAGTTGTGTAC
GATTGTACTACGTTTTTTCGTTGACAAAATGAAAGTGTGGCCGGCAGGGG
AAGGGTAGGCGTTGTCCCCGGTATGTCACTTTTTTGCCATTTCCCCGAAT
ATATATATATTTGGAATTGGGGGGGCGGCATTATGGCGTTTTTATGATTA
TGATCATTCCCATCGCCTATGATGATTCTGCGGGCAGGCTCTCCAGGTTA
TGCTCGGCGTGCTGGATCTGTTGATCGAGGAATACCTCCCCCGCCTTCAT
CGACACTTCCAAGCTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig131951:168..785+

>mRNA_H-elongata_contig131951.2294.1 ID=mRNA_H-elongata_contig131951.2294.1|Name=mRNA_H-elongata_contig131951.2294.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig131951:168..785+ (Himanthalia elongata Himel1 dioecious)
GGCCTGGACTACGTCGTCGCTCATCTGATCAAGTGCCTCAACACCGACGC
CAACCGGGGGTTTTCTTCCAACCCGGAACGCGTGTTTTCGGTGCTGATCG
GCTTGTTCCAAGACTACGGACTGCAGCACATCTACTGCGAAGATCTCGAA
GGCCTGGACTACGTCGTCGCTCATCTGATCAAGTGCCTCAACACCGACGC
CAACCGGGGGTTTTCTTCCAACCCGGAACGCGTGTTTTCGGTGCTGATCG
GCTTGTTCCAAGACTACGGACTGCAGCACATCTACTGCGAAGATCTCGAA
GCTCTCCAGGTTATGCTCGGCGTGCTGGATCTGTTGATCGAGGAATACCT
CCCCCGCCTTCATCGACACTTCCAAGCTCAGGCTCTCCAGGTTATGCTCG
GCGTGCTGGATCTGTTGATCGAGGAATACCTCCCCCGCCTTCATCGACAC
TTCCAAGCTCAG
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