mRNA_H-elongata_contig131904.2293.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131904.2293.1
Unique NamemRNA_H-elongata_contig131904.2293.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig131904.2293.1 vs. uniprot
Match: D7FXN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN6_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 3.470e-29
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 NLGADSEPLTQWICKQLAMGRGRGQGVRGAVQALCVLLRHDDARMSFARHGGVGYLTKIIRMQ 189
            NL ADSEPLT WICKQL+MGRGRGQ VRGAVQALCVLLR+D AR+SF RHGGV YLTKIIRMQ
Sbjct:  158 NLDADSEPLTAWICKQLSMGRGRGQSVRGAVQALCVLLRNDTARISFGRHGGVAYLTKIIRMQ 220
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BLAST of mRNA_H-elongata_contig131904.2293.1 vs. uniprot
Match: A0A6H5LCE7_9PHAE (V-ATPase_H_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCE7_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 4.910e-28
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 NLGADSEPLTQWICKQLAMGRGRGQGVRGAVQALCVLLRHDDARMSFARHGGVGYLTKIIRMQ 189
            NL ADSEPLT WIC+QL+MGRGRGQ VRGAVQALCVLLR+D AR+SF RHGGV YLTKIIRMQ
Sbjct:  228 NLNADSEPLTAWICQQLSMGRGRGQSVRGAVQALCVLLRNDTARISFGRHGGVAYLTKIIRMQ 290
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BLAST of mRNA_H-elongata_contig131904.2293.1 vs. uniprot
Match: A0A7S2H8Z8_9STRA (V-type proton ATPase subunit H n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H8Z8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 7.890e-10
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 NLGADSEPLTQWICKQLAMGRGRGQGVRGAVQALCVLLRHDDARMSFARHGGVGYLTKIIRMQ 189
            N  +  E    W+C+QL   R     +R AV AL +LLR ++AR  F +HGG+GYLTK+++ Q
Sbjct:  157 NSKSPMETFINWLCEQLGNSRKNNPSMRAAVLALTILLRRNEARNLFGQHGGIGYLTKLLKNQ 219
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BLAST of mRNA_H-elongata_contig131904.2293.1 vs. uniprot
Match: W7T214_9STRA (V-type h+-transporting atpase 54 kd subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T214_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 2.420e-5
Identity = 21/62 (33.87%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:    4 LGADSEPLTQWICKQLAMGRGRGQGVRGAVQALCVLLRHDDARMSFARHGGVGYLTKIIRMQ 189
            +  D +     IC +L+    R   ++  V  L +LLR + +R+ F  HGGVG+LTK++++Q
Sbjct:    1 MDGDLDGFVSRICSELS--NSRNPSIKVIVSPLALLLRTEKSRLVFGAHGGVGFLTKLLKLQ 60
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131904.2293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FXN6_ECTSI3.470e-2985.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LCE7_9PHAE4.910e-2884.13V-ATPase_H_C domain-containing protein n=1 Tax=Ect... [more]
A0A7S2H8Z8_9STRA7.890e-1042.86V-type proton ATPase subunit H n=1 Tax=Dictyocha s... [more]
W7T214_9STRA2.420e-533.87V-type h+-transporting atpase 54 kd subunit n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131904contigH-elongata_contig131904:241..429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue1.1e-23
Seed eggNOG ortholog2880.D7FXN6
Preferred nameATP6V1H
KEGG koko:K02144
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04142,ko04145,ko04150,ko04721,ko05110,ko05120,ko05152,ko05323,map00190,map01100,map04142,map04145,map04150,map04721,map05110,map05120,map05152,map05323
KEGG ModuleM00160
GOsGO:0000041,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0000331,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0006403,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006885,GO:0006897,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008340,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009894,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010506,GO:0012505,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015682,GO:0015833,GO:0015931,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016032,GO:0016192,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030004,GO:0030234,GO:0030641,GO:0031090,GO:0031164,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033227,GO:0033572,GO:0034220,GO:0036442,GO:0042221,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043492,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044769,GO:0045184,GO:0045851,GO:0046961,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050690,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051236,GO:0051452,GO:0051453,GO:0051704,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071944,GO:0072512,GO:0090662,GO:0097708,GO:0098588,GO:0098655,GO:0098657,GO:0098660,GO:0098662,GO:0098771,GO:0098772,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
EggNOG free text desc.proton-transporting ATPase activity, rotational mechanism
EggNOG OGsCOG5231@1,KOG2759@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929783.2514033-CDS-H-elongata_contig131904:240..4291622929783.2514033-CDS-H-elongata_contig131904:240..429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131904 241..429 -
1691679155.8891392-CDS-H-elongata_contig131904:240..4291691679155.8891392-CDS-H-elongata_contig131904:240..429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131904 241..429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131904.2293.1prot_H-elongata_contig131904.2293.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131904 241..429 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131904.2293.1

>prot_H-elongata_contig131904.2293.1 ID=prot_H-elongata_contig131904.2293.1|Name=mRNA_H-elongata_contig131904.2293.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
NLGADSEPLTQWICKQLAMGRGRGQGVRGAVQALCVLLRHDDARMSFARH
GGVGYLTKIIRMQ
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mRNA from alignment at H-elongata_contig131904:241..429-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131904.2293.1 ID=mRNA_H-elongata_contig131904.2293.1|Name=mRNA_H-elongata_contig131904.2293.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig131904:241..429- (Himanthalia elongata Himel1 dioecious)
AACTTGGGGGCAGACAGCGAGCCGCTTACCCAGTGGATCTGCAAACAACT
GGCCATGGGGAGGGGTCGCGGGCAAGGCGTCCGCGGCGCCGTACAAGCGC
TGTGTGTCCTGCTGAGGCACGACGATGCCAGGATGTCCTTCGCCAGGCAC
GGCGGCGTCGGTTACCTCACCAAAATCATCCGGATGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig131904:241..429-

>mRNA_H-elongata_contig131904.2293.1 ID=mRNA_H-elongata_contig131904.2293.1|Name=mRNA_H-elongata_contig131904.2293.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig131904:241..429- (Himanthalia elongata Himel1 dioecious)
AACTTGGGGGCAGACAGCGAGCCGCTTACCCAGTGGATCTGCAAACAACT
GGCCATGGGGAGGGGTCGCGGGCAAGGCGTCCGCGGCGCCGTACAAGCGC
TGTGTGTCCTGCTGAGGCACGACGATGCCAGGATGTCCTTCGCCAGGCAC
GGCGGCGTCGGTTACCTCACCAAAATCATCCGGATGCAGAACTTGGGGGC
AGACAGCGAGCCGCTTACCCAGTGGATCTGCAAACAACTGGCCATGGGGA
GGGGTCGCGGGCAAGGCGTCCGCGGCGCCGTACAAGCGCTGTGTGTCCTG
CTGAGGCACGACGATGCCAGGATGTCCTTCGCCAGGCACGGCGGCGTCGG
TTACCTCACCAAAATCATCCGGATGCAG
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