mRNA_H-elongata_contig131901.2292.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131901.2292.1
Unique NamemRNA_H-elongata_contig131901.2292.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig131901.2292.1 vs. uniprot
Match: A0A0S7GGW4_9TELE (NAT10 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7GGW4_9TELE)

HSP 1 Score: 78.2 bits (191), Expect = 1.790e-17
Identity = 37/45 (82.22%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 QALTPNLLARTIETVEGGGLVILLLKTVTSLKQLYTMSMDVHSRY 135
            +ALTPNLLARTIETVEGGG+V++LL+T+ SLKQLYTM+MDVHSRY
Sbjct:   10 EALTPNLLARTIETVEGGGIVVILLRTMNSLKQLYTMTMDVHSRY 54
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BLAST of mRNA_H-elongata_contig131901.2292.1 vs. uniprot
Match: A0A0C2Y4G9_HEBCY (RNA cytidine acetyltransferase n=1 Tax=Hebeloma cylindrosporum h7 TaxID=686832 RepID=A0A0C2Y4G9_HEBCY)

HSP 1 Score: 83.2 bits (204), Expect = 2.180e-17
Identity = 41/45 (91.11%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 QALTPNLLARTIETVEGGGLVILLLKTVTSLKQLYTMSMDVHSRY 135
            +A+TPNLLARTIETVEGGGLV+LLLKT+TSLKQLYTMSMDVHSRY
Sbjct:  126 EAITPNLLARTIETVEGGGLVVLLLKTMTSLKQLYTMSMDVHSRY 170
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BLAST of mRNA_H-elongata_contig131901.2292.1 vs. uniprot
Match: A0A3N4KIM3_9PEZI (RNA cytidine acetyltransferase n=3 Tax=Morchella TaxID=5193 RepID=A0A3N4KIM3_9PEZI)

HSP 1 Score: 83.2 bits (204), Expect = 2.180e-17
Identity = 42/45 (93.33%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 QALTPNLLARTIETVEGGGLVILLLKTVTSLKQLYTMSMDVHSRY 135
            +ALTPNLLARTIETVEGGGLVILLLKT+TSLKQLYTM+MDVHSRY
Sbjct:  128 EALTPNLLARTIETVEGGGLVILLLKTMTSLKQLYTMTMDVHSRY 172
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BLAST of mRNA_H-elongata_contig131901.2292.1 vs. uniprot
Match: A0A1Y2F9X1_PROLT (RNA cytidine acetyltransferase n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2F9X1_PROLT)

HSP 1 Score: 82.8 bits (203), Expect = 2.980e-17
Identity = 40/45 (88.89%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 QALTPNLLARTIETVEGGGLVILLLKTVTSLKQLYTMSMDVHSRY 135
            +ALTPNLLARTIETVEGGG+++LLLKT+TSLKQLYTMSMDVHSRY
Sbjct:  615 EALTPNLLARTIETVEGGGIIVLLLKTMTSLKQLYTMSMDVHSRY 659
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BLAST of mRNA_H-elongata_contig131901.2292.1 vs. uniprot
Match: G1XB84_ARTOA (RNA cytidine acetyltransferase n=10 Tax=Orbiliaceae TaxID=47021 RepID=G1XB84_ARTOA)

HSP 1 Score: 82.8 bits (203), Expect = 2.980e-17
Identity = 41/45 (91.11%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 QALTPNLLARTIETVEGGGLVILLLKTVTSLKQLYTMSMDVHSRY 135
            +A+TPNLLARTIETVEGGGLVI+LLKT+TSLKQLYTMSMDVHSRY
Sbjct:  128 EAITPNLLARTIETVEGGGLVIMLLKTMTSLKQLYTMSMDVHSRY 172
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BLAST of mRNA_H-elongata_contig131901.2292.1 vs. uniprot
Match: D5GMC2_TUBMM (RNA cytidine acetyltransferase n=5 Tax=Tuberaceae TaxID=40289 RepID=D5GMC2_TUBMM)

HSP 1 Score: 82.8 bits (203), Expect = 2.980e-17
Identity = 41/45 (91.11%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 QALTPNLLARTIETVEGGGLVILLLKTVTSLKQLYTMSMDVHSRY 135
            +ALTPNLLARTIETVEGGGLVILLLKT+TSLKQLYTM+MD+HSRY
Sbjct:  131 EALTPNLLARTIETVEGGGLVILLLKTMTSLKQLYTMTMDIHSRY 175
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BLAST of mRNA_H-elongata_contig131901.2292.1 vs. uniprot
Match: A0A4P9ZJ96_9FUNG (DUF1726 domain-containing protein (Fragment) n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZJ96_9FUNG)

HSP 1 Score: 80.5 bits (197), Expect = 3.920e-17
Identity = 39/45 (86.67%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 QALTPNLLARTIETVEGGGLVILLLKTVTSLKQLYTMSMDVHSRY 135
            +ALTPNLLART+ETVEGGGLV+LLLKT+ SLKQLYTM+MDVHSRY
Sbjct:  127 EALTPNLLARTVETVEGGGLVVLLLKTMNSLKQLYTMTMDVHSRY 171
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BLAST of mRNA_H-elongata_contig131901.2292.1 vs. uniprot
Match: W7HPT8_9PEZI (RNA cytidine acetyltransferase n=1 Tax=Drechslerella stenobrocha 248 TaxID=1043628 RepID=W7HPT8_9PEZI)

HSP 1 Score: 82.4 bits (202), Expect = 4.070e-17
Identity = 40/45 (88.89%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 QALTPNLLARTIETVEGGGLVILLLKTVTSLKQLYTMSMDVHSRY 135
            +A+TPNLLART+ETVEGGGLVI+LLKT+TSLKQLYTMSMDVHSRY
Sbjct:  128 EAITPNLLARTVETVEGGGLVIMLLKTMTSLKQLYTMSMDVHSRY 172
[Close]
BLAST of mRNA_H-elongata_contig131901.2292.1 vs. uniprot
Match: A0A3N4LPA7_9PEZI (RNA cytidine acetyltransferase n=1 Tax=Terfezia boudieri ATCC MYA-4762 TaxID=1051890 RepID=A0A3N4LPA7_9PEZI)

HSP 1 Score: 82.4 bits (202), Expect = 4.070e-17
Identity = 40/45 (88.89%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 QALTPNLLARTIETVEGGGLVILLLKTVTSLKQLYTMSMDVHSRY 135
            +ALTPNLLART+ETVEGGGLV+LLLKT+TSLKQLYTM+MDVHSRY
Sbjct:  128 EALTPNLLARTVETVEGGGLVVLLLKTMTSLKQLYTMAMDVHSRY 172
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BLAST of mRNA_H-elongata_contig131901.2292.1 vs. uniprot
Match: V4ARX6_LOTGI (RNA cytidine acetyltransferase n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4ARX6_LOTGI)

HSP 1 Score: 82.4 bits (202), Expect = 4.070e-17
Identity = 40/45 (88.89%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 QALTPNLLARTIETVEGGGLVILLLKTVTSLKQLYTMSMDVHSRY 135
            +ALTPNLLARTIETVEGGGL++LLL+T+TSLKQLYTMSMDVHSRY
Sbjct:  127 EALTPNLLARTIETVEGGGLIVLLLRTMTSLKQLYTMSMDVHSRY 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131901.2292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S7GGW4_9TELE1.790e-1782.22NAT10 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
A0A0C2Y4G9_HEBCY2.180e-1791.11RNA cytidine acetyltransferase n=1 Tax=Hebeloma cy... [more]
A0A3N4KIM3_9PEZI2.180e-1793.33RNA cytidine acetyltransferase n=3 Tax=Morchella T... [more]
A0A1Y2F9X1_PROLT2.980e-1788.89RNA cytidine acetyltransferase n=1 Tax=Protomyces ... [more]
G1XB84_ARTOA2.980e-1791.11RNA cytidine acetyltransferase n=10 Tax=Orbiliacea... [more]
D5GMC2_TUBMM2.980e-1791.11RNA cytidine acetyltransferase n=5 Tax=Tuberaceae ... [more]
A0A4P9ZJ96_9FUNG3.920e-1786.67DUF1726 domain-containing protein (Fragment) n=1 T... [more]
W7HPT8_9PEZI4.070e-1788.89RNA cytidine acetyltransferase n=1 Tax=Drechslerel... [more]
A0A3N4LPA7_9PEZI4.070e-1788.89RNA cytidine acetyltransferase n=1 Tax=Terfezia bo... [more]
V4ARX6_LOTGI4.070e-1788.89RNA cytidine acetyltransferase n=1 Tax=Lottia giga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131901contigH-elongata_contig131901:379..528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score84.0
Seed ortholog evalue2.2e-14
Seed eggNOG ortholog13349.G1XB84
Preferred nameNAT10
KEGG koko:K14521
KEGG Pathwayko03008,map03008
GOsGO:0000049,GO:0000154,GO:0000166,GO:0002097,GO:0002101,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008080,GO:0008144,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0017076,GO:0022613,GO:0030490,GO:0030554,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042274,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0051391,GO:0051392,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1904812,GO:1990882,GO:1990883,GO:1990884,GO:1990904
EggNOG free text desc.RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA-binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation
EggNOG OGs38FQJ@33154,3NU7C@4751,3QKSD@4890,COG1444@1,KOG2036@2759
COG Functional cat.O
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929783.1961968-CDS-H-elongata_contig131901:378..5281622929783.1961968-CDS-H-elongata_contig131901:378..528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131901 379..528 -
1691679155.8728404-CDS-H-elongata_contig131901:378..5281691679155.8728404-CDS-H-elongata_contig131901:378..528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131901 379..528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131901.2292.1prot_H-elongata_contig131901.2292.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131901 379..528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131901.2292.1

>prot_H-elongata_contig131901.2292.1 ID=prot_H-elongata_contig131901.2292.1|Name=mRNA_H-elongata_contig131901.2292.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
QALTPNLLARTIETVEGGGLVILLLKTVTSLKQLYTMSMDVHSRYDLTD*
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mRNA from alignment at H-elongata_contig131901:379..528-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131901.2292.1 ID=mRNA_H-elongata_contig131901.2292.1|Name=mRNA_H-elongata_contig131901.2292.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig131901:379..528- (Himanthalia elongata Himel1 dioecious)
CAGGCGCTGACGCCGAACCTCCTGGCGAGGACAATCGAGACGGTGGAGGG
AGGAGGCCTCGTGATCCTGCTCCTCAAGACCGTTACGAGCCTCAAGCAGC
TCTACACCATGTCCATGGACGTGCACTCTAGGTATGACTTGACTGACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig131901:379..528-

>mRNA_H-elongata_contig131901.2292.1 ID=mRNA_H-elongata_contig131901.2292.1|Name=mRNA_H-elongata_contig131901.2292.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig131901:379..528- (Himanthalia elongata Himel1 dioecious)
CAGGCGCTGACGCCGAACCTCCTGGCGAGGACAATCGAGACGGTGGAGGG
AGGAGGCCTCGTGATCCTGCTCCTCAAGACCGTTACGAGCCTCAAGCAGC
TCTACACCATGTCCATGGACGTGCACTCTAGGTATGACTTGACTGACTGA
CAGGCGCTGACGCCGAACCTCCTGGCGAGGACAATCGAGACGGTGGAGGG
AGGAGGCCTCGTGATCCTGCTCCTCAAGACCGTTACGAGCCTCAAGCAGC
TCTACACCATGTCCATGGACGTGCACTCTAGGTATGACTTGACTGACTGA
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