mRNA_H-elongata_contig131871.2291.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131871.2291.1
Unique NamemRNA_H-elongata_contig131871.2291.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig131871.2291.1 vs. uniprot
Match: A0A6H5J605_9PHAE (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J605_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 5.100e-20
Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 VFGSALGMEGQLSVLNYGVGPCYRCIFPAPLASEASRRCSDNGVLGTVPG 150
            V GSALGMEGQ+SV ++  GPCYRC+FPAPLA+EA RRCSDNGVLGT+PG
Sbjct:  241 VSGSALGMEGQVSVFHHRGGPCYRCVFPAPLAAEAGRRCSDNGVLGTIPG 290
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BLAST of mRNA_H-elongata_contig131871.2291.1 vs. uniprot
Match: A0A7S2CFX3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CFX3_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.420e-17
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 VFGSALGMEGQLSVLNYGVGPCYRCIFPAPLASEASRRCSDNGVLGTVPG 150
            + GSA+G+EGQL+V NY  GPCYRC++P PL +EASR CSD GVLG VPG
Sbjct:   97 ISGSAVGLEGQLTVYNYEGGPCYRCVYPKPLPAEASRACSDAGVLGPVPG 146
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BLAST of mRNA_H-elongata_contig131871.2291.1 vs. uniprot
Match: A0A328E3V1_9ASTE (Adenylyltransferase and sulfurtransferase MOCS3 n=2 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328E3V1_9ASTE)

HSP 1 Score: 79.0 bits (193), Expect = 6.600e-16
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 VFGSALGMEGQLSVLNYGVGPCYRCIFPAPLASEASRRCSDNGVLGTVPG 150
            + G+A+G+EGQL+V NY  GPCYRC+FP P  + A +RCSDNGVLG VPG
Sbjct:  213 ISGAAIGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCSDNGVLGVVPG 262
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BLAST of mRNA_H-elongata_contig131871.2291.1 vs. uniprot
Match: A0A7R9ZQM9_9STRA (Adenylyltransferase and sulfurtransferase MOCS3 homolog n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZQM9_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.240e-15
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 VFGSALGMEGQLSVLNYGVGPCYRCIFPAPLASEASRRCSDNGVLGTVPG 150
            V GSA+GMEGQL++ N+  GPCYRC++P P  SE ++ CSDNGVLG VPG
Sbjct:  268 VSGSAIGMEGQLTIYNHKEGPCYRCLYPKPSKSEGTKTCSDNGVLGPVPG 317
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BLAST of mRNA_H-elongata_contig131871.2291.1 vs. uniprot
Match: A0A1E7EU96_9STRA (Adenylyltransferase and sulfurtransferase MOCS3 homolog n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EU96_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.810e-15
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 VFGSALGMEGQLSVLNYGVGPCYRCIFPAPLASEASRRCSDNGVLGTVPG 150
            V GSA+G+EGQL+V NY  GPCYRC++P P   E ++ CSDNGVLG VPG
Sbjct:  160 VSGSAMGIEGQLTVCNYKGGPCYRCLYPKPNVKEGNKSCSDNGVLGPVPG 209
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BLAST of mRNA_H-elongata_contig131871.2291.1 vs. uniprot
Match: A0A7S0QFS5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QFS5_9CRYP)

HSP 1 Score: 72.4 bits (176), Expect = 4.120e-15
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 VFGSALGMEGQLSVLNYGVGPCYRCIFPAPLASEASRRCSDNGVLGTVPG 150
            V GSAL MEGQL+V +YG GPCYRCIFP P  +     CSD GV+G VPG
Sbjct:   32 VSGSALRMEGQLTVYSYGGGPCYRCIFPQPPPAHTVTNCSDGGVIGPVPG 81
[Close]
BLAST of mRNA_H-elongata_contig131871.2291.1 vs. uniprot
Match: A0A2R6XIM6_MARPO (Adenylyltransferase and sulfurtransferase MOCS3 n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XIM6_MARPO)

HSP 1 Score: 76.3 bits (186), Expect = 5.970e-15
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 VFGSALGMEGQLSVLNYGVGPCYRCIFPAPLASEASRRCSDNGVLGTVPG 150
            V G+ALG+EGQLSV N+  GPCYRC+FP P      +RCSDNGVLG VPG
Sbjct:  273 VSGAALGLEGQLSVYNHKSGPCYRCLFPVPPPPGTRQRCSDNGVLGVVPG 322
[Close]
BLAST of mRNA_H-elongata_contig131871.2291.1 vs. uniprot
Match: A0A176WGH2_MARPO (Rhodanese domain-containing protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176WGH2_MARPO)

HSP 1 Score: 76.3 bits (186), Expect = 5.980e-15
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 VFGSALGMEGQLSVLNYGVGPCYRCIFPAPLASEASRRCSDNGVLGTVPG 150
            V G+ALG+EGQLSV N+  GPCYRC+FP P      +RCSDNGVLG VPG
Sbjct:  452 VSGAALGLEGQLSVYNHKSGPCYRCLFPVPPPPGTRQRCSDNGVLGVVPG 501
[Close]
BLAST of mRNA_H-elongata_contig131871.2291.1 vs. uniprot
Match: UPI001C530EC1 (adenylyltransferase and sulfurtransferase MOCS3 n=2 Tax=Proteaceae TaxID=4328 RepID=UPI001C530EC1)

HSP 1 Score: 75.9 bits (185), Expect = 7.940e-15
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 VFGSALGMEGQLSVLNYGVGPCYRCIFPAPLASEASRRCSDNGVLGTVPG 150
            V G+ALG+EGQL+V N+  GPCYRC+FP P  + A + CSDNGVLG VPG
Sbjct:  213 VSGAALGLEGQLTVYNHNGGPCYRCLFPTPPPTTACQSCSDNGVLGVVPG 262
[Close]
BLAST of mRNA_H-elongata_contig131871.2291.1 vs. uniprot
Match: A0A1V9ZLP1_9STRA (Rhodanese domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZLP1_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 9.400e-15
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 VFGSALGMEGQLSVLNYGVGPCYRCIFPAPLASEASRRCSDNGVLGTVPG 150
            V GSALG+EGQ++V NY  GPCYRC +PAP  +  +  CSDNGVLG VPG
Sbjct:  153 VSGSALGLEGQVAVYNYNDGPCYRCCYPAPAPAAMTGSCSDNGVLGVVPG 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131871.2291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J605_9PHAE5.100e-2078.00Rhodanese domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S2CFX3_9STRA2.420e-1768.00Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A328E3V1_9ASTE6.600e-1664.00Adenylyltransferase and sulfurtransferase MOCS3 n=... [more]
A0A7R9ZQM9_9STRA1.240e-1564.00Adenylyltransferase and sulfurtransferase MOCS3 ho... [more]
A0A1E7EU96_9STRA2.810e-1564.00Adenylyltransferase and sulfurtransferase MOCS3 ho... [more]
A0A7S0QFS5_9CRYP4.120e-1564.00Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A2R6XIM6_MARPO5.970e-1566.00Adenylyltransferase and sulfurtransferase MOCS3 n=... [more]
A0A176WGH2_MARPO5.980e-1566.00Rhodanese domain-containing protein n=1 Tax=Marcha... [more]
UPI001C530EC17.940e-1564.00adenylyltransferase and sulfurtransferase MOCS3 n=... [more]
A0A1V9ZLP1_9STRA9.400e-1564.00Rhodanese domain-containing protein n=1 Tax=Achlya... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131871contigH-elongata_contig131871:1421..1570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue1.6e-13
Seed eggNOG ortholog2880.D7FNE1
Preferred namecnxF
KEGG rclassRC00043
KEGG koko:K11996,ko:K18469
KEGG ReactionR07459,R07461
KEGG Pathwayko04122,map04122
GOsGO:0000003,GO:0001403,GO:0001558,GO:0002097,GO:0002098,GO:0002143,GO:0003674,GO:0003824,GO:0004792,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006725,GO:0006732,GO:0006753,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007114,GO:0008033,GO:0008150,GO:0008152,GO:0008265,GO:0008641,GO:0009058,GO:0009108,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009451,GO:0009987,GO:0010467,GO:0010570,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0016782,GO:0016783,GO:0016874,GO:0016877,GO:0018117,GO:0018130,GO:0018175,GO:0019008,GO:0019538,GO:0019637,GO:0019693,GO:0019720,GO:0019954,GO:0030447,GO:0032324,GO:0032446,GO:0032447,GO:0032505,GO:0032991,GO:0033554,GO:0034227,GO:0034470,GO:0034599,GO:0034641,GO:0034660,GO:0036211,GO:0036267,GO:0040007,GO:0040008,GO:0042221,GO:0042278,GO:0042292,GO:0043170,GO:0043412,GO:0043545,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051186,GO:0051188,GO:0051189,GO:0051301,GO:0051716,GO:0055086,GO:0065007,GO:0070566,GO:0070647,GO:0070733,GO:0070783,GO:0070784,GO:0070887,GO:0071566,GO:0071704,GO:0072521,GO:0090304,GO:0090407,GO:1900428,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:2000220
EggNOG free text desc.thiosulfate sulfurtransferase activity
EggNOG OGsCOG0476@1,KOG2017@2759
EC2.7.7.80,2.8.1.11
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016,ko04121,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionmolybdopterin-synthase adenylyltransferase / sulfurtransferase
Ec32 orthologEc-22_001380.1
Exons1
Model size150
Cds size129
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929783.12829-CDS-H-elongata_contig131871:1420..15491622929783.12829-CDS-H-elongata_contig131871:1420..1549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131871 1421..1549 -
1691679155.8508358-CDS-H-elongata_contig131871:1420..15491691679155.8508358-CDS-H-elongata_contig131871:1420..1549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131871 1421..1549 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929783.145624-UTR-H-elongata_contig131871:1549..15701622929783.145624-UTR-H-elongata_contig131871:1549..1570Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131871 1550..1570 -
1691679155.863046-UTR-H-elongata_contig131871:1549..15701691679155.863046-UTR-H-elongata_contig131871:1549..1570Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131871 1550..1570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131871.2291.1prot_H-elongata_contig131871.2291.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131871 1421..1549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131871.2291.1

>prot_H-elongata_contig131871.2291.1 ID=prot_H-elongata_contig131871.2291.1|Name=mRNA_H-elongata_contig131871.2291.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
MEGQLSVLNYGVGPCYRCIFPAPLASEASRRCSDNGVLGTVPG
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mRNA from alignment at H-elongata_contig131871:1421..1570-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131871.2291.1 ID=mRNA_H-elongata_contig131871.2291.1|Name=mRNA_H-elongata_contig131871.2291.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig131871:1421..1570- (Himanthalia elongata Himel1 dioecious)
GTCTTCGGCAGCGCGTTGGGTATGGAGGGACAGCTATCGGTCCTTAACTA
CGGAGTAGGCCCGTGCTATCGATGCATCTTCCCGGCACCCCTTGCCTCGG
AGGCCAGTAGGAGGTGCAGCGACAACGGCGTTCTCGGGACTGTCCCTGGT
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Coding sequence (CDS) from alignment at H-elongata_contig131871:1421..1570-

>mRNA_H-elongata_contig131871.2291.1 ID=mRNA_H-elongata_contig131871.2291.1|Name=mRNA_H-elongata_contig131871.2291.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig131871:1421..1570- (Himanthalia elongata Himel1 dioecious)
ATGGAGGGACAGCTATCGGTCCTTAACTACGGAGTAGGCCCGTGCTATCG
ATGCATCTTCCCGGCACCCCTTGCCTCGGAGGCCAGTAGGAGGTGCAGCG
ACAACGGCGTTCTCGGGACTGTCCCTGGTATGGAGGGACAGCTATCGGTC
CTTAACTACGGAGTAGGCCCGTGCTATCGATGCATCTTCCCGGCACCCCT
TGCCTCGGAGGCCAGTAGGAGGTGCAGCGACAACGGCGTTCTCGGGACTG
TCCCTGGT
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