mRNA_H-elongata_contig13186.2288.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13186.2288.1
Unique NamemRNA_H-elongata_contig13186.2288.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13186.2288.1 vs. uniprot
Match: D8LJH7_ECTSI (Chromatin remodeling complex subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH7_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 1.190e-84
Identity = 152/226 (67.26%), Postives = 174/226 (76.99%), Query Frame = 1
Query:  151 MSKDQRAGLKKVKSASQWVVDKLAASAETRTKFVVFAHHKAVLDRLQEAFEVAGTFGEGY----KGSSSHDDDCGAGFSCLRIDGEVPTAVRQATILANDFFNTDTRCRVLLVSITAGGQGLDFTAASNVVFVELPESPSWLRQAEDRLHRRKQDKSVNVYLMVLPAGSNDDIRWLRLSEKLTTQTSVVNGVAQAESINVDKVCDVDTVLTLDSGSRREDPFRSHR 816
            MSKD RAGLKKVKSAS+WV++KL AS ET TKFVVFAHHK VLDRLQEAFEV GT G       + ++  DD     F+CLRIDG VPTA+R + +     FNT+ RCRVL+VSITAGGQGLDFTAASNVVFVELPESP+WLRQAEDRLHRR+Q+KSVNVYL VLP GS+DD RWL LSEKLTTQTSV+NG   AE+I+VD+V D  + L  D  +RR    R  R
Sbjct:    1 MSKDHRAGLKKVKSASEWVIEKLIASEETLTKFVVFAHHKTVLDRLQEAFEVQGTRGNTCPFTPRAANDSDDASVGAFTCLRIDGSVPTALRASRLSE---FNTNERCRVLVVSITAGGQGLDFTAASNVVFVELPESPAWLRQAEDRLHRRRQEKSVNVYLTVLPTGSHDDTRWLSLSEKLTTQTSVMNGTLYAENIDVDRVVDAGSTLDHDGPTRRPSRRRGRR 223          
BLAST of mRNA_H-elongata_contig13186.2288.1 vs. uniprot
Match: W7TN96_9STRA (Zinc finger ran-binding domain-containing protein 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN96_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.440e-28
Identity = 79/215 (36.74%), Postives = 106/215 (49.30%), Query Frame = 1
Query:  148 GMSKDQRAGLKKVKSASQWVVDKL---------------AASAETRTKFVVFAHHKAVLDRLQEAFEVAGTFGEGYKGSSSHDDDCGAGFSCLRIDGEVPTAVRQATILANDFFNTDTRCRVLLVSITAGGQGLDFTAASNVVFVELPESPSWLRQAEDRLHRRKQDKSVNVYLMVLPAGSNDDIRWLRLSEKLTTQTSVVNGVAQAESINVDKV 747
            G S+  + G  K+    +W+ D+L               A       KFV+FAHH  VL  L              +  + H       +S ++I G  P   RQ  +     F  D  CR+ L+ ITAGG GLD  AAS  VFVELP SP WLRQAEDRLHRR Q + V +Y +VLP GS +D  W  +   L   T+V+N   +AE ++V++V
Sbjct:  726 GQSEYHQLGHLKLGGVKEWLADRLLGGWLDAGVVGYEEDAIVEADAPKFVIFAHHLDVLAVLHGFLHNIFVRHRACRRLAFH-------WSQVQIQGSTPPETRQDLVKR---FKNDRYCRMALIGITAGGSGLDLAAASTAVFVELPNSPHWLRQAEDRLHRRGQRRRVQIYYLVLPPGSAEDKVWQCMRRLLRENTAVINSREEAEELDVNRV 930          
BLAST of mRNA_H-elongata_contig13186.2288.1 vs. uniprot
Match: A0A5J4Y511_9CHLO (SNF2 family DNA-dependent ATPase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y511_9CHLO)

HSP 1 Score: 121 bits (304), Expect = 2.070e-27
Identity = 80/198 (40.40%), Postives = 107/198 (54.04%), Query Frame = 1
Query:  151 MSKDQRAGLKKVKSASQWVVDKLAAS--------------AETRTKFVVFAHHKAVLDRLQEAFEVAGTFGEGYKGSSSHDDDCGAGFSCLRIDGEVPTAVRQATILANDFFNTDTRCRVLLVSITAGGQGLDFTAASNVVFVELPESPSWLRQAEDRLHRRKQDKSVNVYLMVLPAGSNDDIRWLRLSEKLTTQTSV 702
            MSK  + GL K+ +  +W+++ L A+              AE   KF++FAHHK V+ +L  A E     G+G +G          G   +RIDGE  +  R+   L    F  D   R  L+SITA G GLDF+AAS VVFVELP+  + +RQAEDR HR  Q  SVNVY +V   G++D+ RW  LS  L   T+V
Sbjct:  633 MSKSHQTGLAKLPNGLEWLINALGAARQGSKGGVESQGEGAEPAPKFLIFAHHKDVMSKLANALEG----GQGKEGWG--------GVPYVRIDGETDSRDRRTACLQ---FKEDPSIRAALLSITAAGTGLDFSAASAVVFVELPQEVALVRQAEDRAHRHGQKLSVNVYFLVAK-GTSDEHRWQALSRSLERVTAV 814          
BLAST of mRNA_H-elongata_contig13186.2288.1 vs. uniprot
Match: A0A0K9NWB6_ZOSMR (Uncharacterized protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NWB6_ZOSMR)

HSP 1 Score: 118 bits (295), Expect = 3.020e-26
Identity = 72/208 (34.62%), Postives = 107/208 (51.44%), Query Frame = 1
Query:  160 DQRAGLKKVKSASQWVVDKLAAS--------AETRTKFVVFAHHKAVLDRLQEAFEVAGTFGEGYKGSSSHDDDCGAGFSCLRIDGEVPTAVRQATILANDFFNTDTRCRVLLVSITAGGQGLDFTAASNVVFVELPESPSWLRQAEDRLHRRKQDKSVNVYLMVLPAGSNDDIRWLRLSEKLTTQTSVVNGVAQA-ESINVDKVCDV 756
            ++  G+ K+    +W+ +   AS         +   K ++FAHH  VLD +QE                     CG     +RIDG   +  R+ ++   + F T    ++ L+ IT G  GLDF++A NVVFVELP S S + QAEDR+HRR Q  SVN+Y+     G++D+  WL L++ L   +S++NG   A   I VD VC+V
Sbjct:  474 NEELGIAKLHKFGEWLYNHSIASYMDVILDVEQPSQKMLIFAHHIKVLDGIQELI-------------------CGKQIKFVRIDGSTSSTDRKTSL---ELFRTSNEVKIALIGITVGAAGLDFSSAQNVVFVELPHSASMMLQAEDRVHRRGQTNSVNIYIFC-GKGTSDESHWLHLNKSLYRVSSMMNGKVDAIREIEVDGVCEV 658          
BLAST of mRNA_H-elongata_contig13186.2288.1 vs. uniprot
Match: A0A1Y1HPT8_KLENI (Helicase C-terminal domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HPT8_KLENI)

HSP 1 Score: 113 bits (283), Expect = 4.270e-26
Identity = 77/204 (37.75%), Postives = 106/204 (51.96%), Query Frame = 1
Query:  163 QRAGLKKVKSASQWVVDKLAAS------AETRTKFVVFAHHKAVLDRLQEAFEVAGTFGEGYKGSSSHDDDCGAGFSCLRIDGEVPTAVRQATILANDFFNTDTRCRVLLVSITAGGQGLDFTAASNVVFVELPESPSWLRQAEDRLHRRKQDKSVNVYLMVLPAGSNDDIRWLRLSEKLTTQTSVVNGVAQA-ESINVDKVCD 753
            Q+ GL K++   +W+ + +  +      AE   K ++FAHH  +LDR++                     DCG  +  +R DG      RQA +   DF + D   RV +V +TAGG GLDF+AA  VVF ELP S + L  A+DR HRR Q  +VNVYL      + D+  W+RLSE L   T+VVNG   A   I+VD + D
Sbjct:   49 QQIGLAKLRGVREWLGNNVGLTPQKEEGAEDVPKMIIFAHHIELLDRIERYVH-----------------DCGVDY--VRFDGSTLGRDRQAAV--QDFKHRD-EIRVAIVGVTAGGVGLDFSAAQTVVFAELPTSSADLMHAKDRAHRRGQSSAVNVYLFCAK-DTGDETSWMRLSESLERVTTVVNGSENAVRGIHVDAIED 229          
BLAST of mRNA_H-elongata_contig13186.2288.1 vs. uniprot
Match: A0A6P4ACM7_ZIZJJ (DNA annealing helicase and endonuclease ZRANB3 isoform X1 n=5 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4ACM7_ZIZJJ)

HSP 1 Score: 117 bits (293), Expect = 5.660e-26
Identity = 91/277 (32.85%), Postives = 141/277 (50.90%), Query Frame = 1
Query:    1 RMPCYRRIVVRVVPHAEEL---KAALQAAGG-------FEPDPDG----DNGERSTRQTRWAGGMSKDQRAGLKKVKSASQWV-VDKLAASAETRT-KFVVFAHHKAVLDRLQEAFEVAGTFGEGYKGSSSHDDDCGAGFSCLRIDGEVPTAVRQATILANDFFNTDTRCRVLLVSITAGGQGLDFTAASNVVFVELPESPSWLRQAEDRLHRRKQDKSVNVYLMVLPAGSNDDIRWLRLSEKLTTQTSVVNGVAQA-ESINVDKVCDVDTVLTLDS 780
            ++P  RR +V+++    ++   KAA+    G        E D D     D+GE   R     G +S +Q  G+ K     +W+ +  L A +++ + K ++FAHH  VLD +QE                     C  G   +RIDG      RQ+ +L+   F + T+ +V ++ ITAGG GLDF++A +VVF+ELP+SPS + QAEDR HRR Q  +VN+Y+      + DD  W  L++ L   +S  NG   A + I V+ V  ++T   +DS
Sbjct:  445 QLPPKRRQIVQLLLKRSDIVSAKAAIGVVNGDASFRSVLEDDTDNLDVSDDGEGCCR----VGELS-NQELGIAKRSGFCEWLSIHSLIADSDSNSNKMIIFAHHHKVLDGVQEFI-------------------CEKGIGFVRIDGNTLARDRQSAVLS---FQSLTKVKVAIIGITAGGVGLDFSSAQHVVFLELPQSPSLMLQAEDRAHRRGQKNAVNIYVFCAK-DTMDDSHWQNLNKSLRRVSSATNGKYDAIQEIEVEGVSFLETFDRVDS 693          
BLAST of mRNA_H-elongata_contig13186.2288.1 vs. uniprot
Match: A0A394D9Z4_LUPAN (Uncharacterized protein n=2 Tax=Lupinus TaxID=3869 RepID=A0A394D9Z4_LUPAN)

HSP 1 Score: 116 bits (291), Expect = 1.030e-25
Identity = 80/262 (30.53%), Postives = 127/262 (48.47%), Query Frame = 1
Query:    1 RMPCYRRIVVRVVPHAEELKAALQAAGGFEPDPDGDNGERSTRQTRWAGGMSKDQRAGLKKVKSASQWV-VDKLAASAETRTKFVVFAHHKAVLDRLQEAFEVAGTFGEGYKGSSSHDDDCGAGFSCLRIDGEVPTAVRQATILANDFFNTDTRCRVLLVSITAGGQGLDFTAASNVVFVELPESPSWLRQAEDRLHRRKQDKSVNVYLMVLPAGSNDDIRWLRLSEKLTTQTSVVNGVAQA-ESINVDKVCDVDTVLTLDS 780
            ++P  RR ++R++    ++ AA  A G  + D    + +          G    Q  G+ K+    +W+ +  L A  E  +K ++FAHH  VLD LQE                     C  G   +RIDG      RQ+ +++   F +    ++ ++ I A G GLDF+ A +VVF+ELP+SPS + QAEDR HRR Q  +VNVY+      + D++ W  L++ L   +S  +G   A + I V+ +  +D  L  DS
Sbjct:  421 QLPPKRRQIIRLLLKRSDIVAAKNAVGALKFDGSESSSDEDFEILDAPDGKLSYQELGIAKISGFREWLSLHPLIAEPENASKMIIFAHHHKVLDGLQEFV-------------------CEKGIGFVRIDGTTLARDRQSAVVS---FRSSPEVKIAIIGILAAGFGLDFSTAQDVVFLELPQSPSVMLQAEDRAHRRGQTNAVNVYIFSAK-DTLDELLWKNLNKSLHRVSSTTDGKYDAMKEIEVEGISYLDGSLKADS 659          
BLAST of mRNA_H-elongata_contig13186.2288.1 vs. uniprot
Match: A0A444WWE9_ARAHY (Helicase C-terminal domain-containing protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444WWE9_ARAHY)

HSP 1 Score: 116 bits (290), Expect = 1.230e-25
Identity = 79/267 (29.59%), Postives = 131/267 (49.06%), Query Frame = 1
Query:    1 RMPCYRRIVVRVVPHAEELKAALQAAGGFE-PDPDGDNGERSTRQTRWAGGMSKDQRAGLKKVKSASQWV-VDKLAASAETRTKFVVFAHHKAVLDRLQEAFEVAGTFGEGYKGSSSHDDDCGAGFSCLRIDGEVPTAVRQATILANDFFNTDTRCRVLLVSITAGGQGLDFTAASNVVFVELPESPSWLRQAEDRLHRRKQDKSVNVYLMVLPAGSNDDIRWLRLSEKLTTQTSVVNGVAQA-ESINVDKVCDVDTVLTLDSGSRR 792
            ++P  RR ++R++    ++ AA  A G     DP+  + +     +    G    Q  G+ K+    +W+ +  L A +E   K ++FAHH  VLD +QE                     C  G   +RIDG      RQ+ ++A   F + +  ++ ++ I A G GLDF+ A +VVF+ELP+ P+ + QAEDR HRR Q  +VNVY+      ++D++RW  L++ L   +   +G   A + I VD +  ++T    DS   +
Sbjct:   67 QLPPKRRQIIRLLLKKSDIVAAKTAVGALTIDDPERASEDMPLGNSDEVDGDLSVQELGIAKLSGFREWLSLHPLIAGSENSKKMIIFAHHHKVLDGVQEFI-------------------CEKGVGFVRIDGSTLPRDRQSAVVA---FRSSSEVKIAIIGILAAGFGLDFSTAQDVVFLELPQCPTVMLQAEDRAHRRGQKNAVNVYIFCAK-DTSDELRWKNLNKSLHRVSKTTDGKYDAMKEIVVDDISYLETYFKTDSSDEQ 310          
BLAST of mRNA_H-elongata_contig13186.2288.1 vs. uniprot
Match: A0A6P4C3Q4_ARADU (DNA annealing helicase and endonuclease ZRANB3 n=5 Tax=Arachis TaxID=3817 RepID=A0A6P4C3Q4_ARADU)

HSP 1 Score: 116 bits (290), Expect = 1.380e-25
Identity = 79/267 (29.59%), Postives = 131/267 (49.06%), Query Frame = 1
Query:    1 RMPCYRRIVVRVVPHAEELKAALQAAGGFE-PDPDGDNGERSTRQTRWAGGMSKDQRAGLKKVKSASQWV-VDKLAASAETRTKFVVFAHHKAVLDRLQEAFEVAGTFGEGYKGSSSHDDDCGAGFSCLRIDGEVPTAVRQATILANDFFNTDTRCRVLLVSITAGGQGLDFTAASNVVFVELPESPSWLRQAEDRLHRRKQDKSVNVYLMVLPAGSNDDIRWLRLSEKLTTQTSVVNGVAQA-ESINVDKVCDVDTVLTLDSGSRR 792
            ++P  RR ++R++    ++ AA  A G     DP+  + +     +    G    Q  G+ K+    +W+ +  L A +E   K ++FAHH  VLD +QE                     C  G   +RIDG      RQ+ ++A   F + +  ++ ++ I A G GLDF+ A +VVF+ELP+ P+ + QAEDR HRR Q  +VNVY+      ++D++RW  L++ L   +   +G   A + I VD +  ++T    DS   +
Sbjct:  419 QLPPKRRQIIRLLLKKSDIVAAKTAVGALTIDDPERASEDMPLGNSDEVDGDLSVQELGIAKLSGFREWLSLHPLIAGSENSKKMIIFAHHHKVLDGVQEFI-------------------CEKGVGFVRIDGSTLPRDRQSAVVA---FRSSSEVKIAIIGILAAGFGLDFSTAQDVVFLELPQCPTVMLQAEDRAHRRGQKNAVNVYIFCAK-DTSDELRWKNLNKSLHRVSKTTDGKYDAMKEIVVDDISYLETYFKTDSSDEQ 662          
BLAST of mRNA_H-elongata_contig13186.2288.1 vs. uniprot
Match: A0A6P9E5V3_JUGRE (DNA annealing helicase and endonuclease ZRANB3-like isoform X1 n=23 Tax=Juglandaceae TaxID=16714 RepID=A0A6P9E5V3_JUGRE)

HSP 1 Score: 115 bits (288), Expect = 2.590e-25
Identity = 76/222 (34.23%), Postives = 112/222 (50.45%), Query Frame = 1
Query:  163 QRAGLKKVKSASQWV-VDKLAASAETRT---------KFVVFAHHKAVLDRLQEAFEVAGTFGEGYKGSSSHDDDCGAGFSCLRIDGEVPTAVRQATILANDFFNTDTRCRVLLVSITAGGQGLDFTAASNVVFVELPESPSWLRQAEDRLHRRKQDKSVNVYLMVLPAGSNDDIRWLRLSEKLTTQTSVVNGVAQA-ESINVDKVCDVDTVLTLDSGSRRE 795
            Q  G+ K+    +W+ +  L A +++           K ++FAHH  VLD +QE                     C  G S +RIDG      RQ+ +L+   F + T  +V ++ ITAGG GLDF++A NVVF+ELP+SPS + QAEDR HRR Q  +VN+Y+     G+ D+  W  L+  L   +S  NG   A + I VD V  ++T    D   + +
Sbjct:  493 QELGIAKLSGFREWLSIHPLVAESDSTEVLDLHFSSRKMIIFAHHHKVLDGIQEFV-------------------CEKGISFVRIDGNTLARDRQSAVLS---FKSSTEVKVAIIGITAGGVGLDFSSAQNVVFLELPKSPSLMLQAEDRAHRRGQTSAVNIYIFCAK-GTLDESHWSYLNRSLRHVSSTTNGKYDAIQEIQVDGVSYLETSDKTDGSCKNQ 691          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13186.2288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJH7_ECTSI1.190e-8467.26Chromatin remodeling complex subunit n=1 Tax=Ectoc... [more]
W7TN96_9STRA2.440e-2836.74Zinc finger ran-binding domain-containing protein ... [more]
A0A5J4Y511_9CHLO2.070e-2740.40SNF2 family DNA-dependent ATPase n=1 Tax=Trebouxia... [more]
A0A0K9NWB6_ZOSMR3.020e-2634.62Uncharacterized protein n=1 Tax=Zostera marina Tax... [more]
A0A1Y1HPT8_KLENI4.270e-2637.75Helicase C-terminal domain-containing protein n=1 ... [more]
A0A6P4ACM7_ZIZJJ5.660e-2632.85DNA annealing helicase and endonuclease ZRANB3 iso... [more]
A0A394D9Z4_LUPAN1.030e-2530.53Uncharacterized protein n=2 Tax=Lupinus TaxID=3869... [more]
A0A444WWE9_ARAHY1.230e-2529.59Helicase C-terminal domain-containing protein n=1 ... [more]
A0A6P4C3Q4_ARADU1.380e-2529.59DNA annealing helicase and endonuclease ZRANB3 n=5... [more]
A0A6P9E5V3_JUGRE2.590e-2534.23DNA annealing helicase and endonuclease ZRANB3-lik... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13186contigH-elongata_contig13186:219..3084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score287.0
Seed ortholog evalue9.5e-75
Seed eggNOG ortholog2880.D8LJH7
KEGG koko:K10876,ko:K14440
GOsGO:0000018,GO:0000228,GO:0000733,GO:0003674,GO:0003676,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0016043,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0017111,GO:0019219,GO:0019222,GO:0031297,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031593,GO:0031974,GO:0031981,GO:0032392,GO:0033554,GO:0034641,GO:0034645,GO:0036292,GO:0036310,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045005,GO:0045910,GO:0045934,GO:0046483,GO:0048478,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070530,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0097159,GO:0097617,GO:0140030,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.annealing helicase activity
EggNOG OGsCOG0553@1,KOG1000@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Exons7
Model size819
Cds size816
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13186.2288.1prot_H-elongata_contig13186.2288.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13186 222..3084 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929782.9298713-UTR-H-elongata_contig13186:218..2211622929782.9298713-UTR-H-elongata_contig13186:218..221Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13186 219..221 +
1691679155.7420363-UTR-H-elongata_contig13186:218..2211691679155.7420363-UTR-H-elongata_contig13186:218..221Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13186 219..221 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929782.9464564-CDS-H-elongata_contig13186:221..2941622929782.9464564-CDS-H-elongata_contig13186:221..294Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13186 222..294 +
1691679155.754237-CDS-H-elongata_contig13186:221..2941691679155.754237-CDS-H-elongata_contig13186:221..294Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13186 222..294 +
1622929782.965034-CDS-H-elongata_contig13186:585..6921622929782.965034-CDS-H-elongata_contig13186:585..692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13186 586..692 +
1691679155.7667212-CDS-H-elongata_contig13186:585..6921691679155.7667212-CDS-H-elongata_contig13186:585..692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13186 586..692 +
1622929782.9757605-CDS-H-elongata_contig13186:915..10261622929782.9757605-CDS-H-elongata_contig13186:915..1026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13186 916..1026 +
1691679155.775779-CDS-H-elongata_contig13186:915..10261691679155.775779-CDS-H-elongata_contig13186:915..1026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13186 916..1026 +
1622929782.9871464-CDS-H-elongata_contig13186:1420..15671622929782.9871464-CDS-H-elongata_contig13186:1420..1567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13186 1421..1567 +
1691679155.784594-CDS-H-elongata_contig13186:1420..15671691679155.784594-CDS-H-elongata_contig13186:1420..1567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13186 1421..1567 +
1622929783.0009582-CDS-H-elongata_contig13186:1985..21441622929783.0009582-CDS-H-elongata_contig13186:1985..2144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13186 1986..2144 +
1691679155.7972212-CDS-H-elongata_contig13186:1985..21441691679155.7972212-CDS-H-elongata_contig13186:1985..2144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13186 1986..2144 +
1622929783.0119216-CDS-H-elongata_contig13186:2606..26831622929783.0119216-CDS-H-elongata_contig13186:2606..2683Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13186 2607..2683 +
1691679155.8098433-CDS-H-elongata_contig13186:2606..26831691679155.8098433-CDS-H-elongata_contig13186:2606..2683Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13186 2607..2683 +
1622929783.0238643-CDS-H-elongata_contig13186:2942..30841622929783.0238643-CDS-H-elongata_contig13186:2942..3084Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13186 2943..3084 +
1691679155.8187573-CDS-H-elongata_contig13186:2942..30841691679155.8187573-CDS-H-elongata_contig13186:2942..3084Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13186 2943..3084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13186.2288.1

>prot_H-elongata_contig13186.2288.1 ID=prot_H-elongata_contig13186.2288.1|Name=mRNA_H-elongata_contig13186.2288.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=272bp
MPCYRRIVVRVVPHAEELKAALQAAGGFEPDPDGDNGERSTRQTRWAGGM
SKDQRAGLKKVKSASQWVVDKLAASAETRTKFVVFAHHKAVLDRLQEAFE
VAGTFGEGYKGSSSHDDDCGAGFSCLRIDGEVPTAVRQATILANDFFNTD
TRCRVLLVSITAGGQGLDFTAASNVVFVELPESPSWLRQAEDRLHRRKQD
KSVNVYLMVLPAGSNDDIRWLRLSEKLTTQTSVVNGVAQAESINVDKVCD
VDTVLTLDSGSRREDPFRSHR*
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mRNA from alignment at H-elongata_contig13186:219..3084+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13186.2288.1 ID=mRNA_H-elongata_contig13186.2288.1|Name=mRNA_H-elongata_contig13186.2288.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2866bp|location=Sequence derived from alignment at H-elongata_contig13186:219..3084+ (Himanthalia elongata Himel1 dioecious)
CGTATGCCATGTTACAGGCGGATCGTGGTTCGAGTGGTACCTCACGCGGA GGAGCTTAAGGCTGCCCTTCAAGCTGGTGAGTGAGGAGGGCGTGATACTA AAGGGTATTGGTGCCATATTCATAGTGCCATAGTGTGGGATGTATTATGT ATTATGTATAATGTTATTTGAATTTCACCGTTGTATTATGATCCGAACGA TCGATTATAGAAGTGGTGATAAACCTTGCTGTAGTAGTGATGATCCATGC TCTAGTGATGATAGGCCTTGATGTAGTGCTGATAGAGCCTGGTGTCTCTG AAGCCTGTCCAGTCGCTGTCATGGGTTATGATTCAGGGTTTCGAATAACC ATTTTTTTTGCTACAAGCAGGCGGGTTTGAACCTGATCCTGATGGTGATA ATGGAGAGAGATCAACACGGCAAACGCGGTGGGCGGGAGGCATGAGCAAG GATCAGAGGGCGGGACTGAAAAAGGTATGTTTGGTTGGAATGAAAAGATA CAGAGTGTGAGACTGAAAAAGATACAGACATGGCGGGAAGTAAAACCATA TCCCATGGAGTGCGGAGTAAGAAAGGGCGAGTTTCAATGCGGTCGTTCAC CGCTGTCGTCCACTGTCGTAGTCATGGCTATGGTAGAAAACGAGATGGTT TTACCAATAGGGTTAGGATTAGCGACTCGCTGACCCTACGATGGCAGGTA AAGTCAGCGTCGCAGTGGGTCGTGGACAAGCTTGCTGCTTCTGCGGAGAC GAGGACAAAGTTCGTGGTGTTCGCGCATCACAAGGCTGTATTGGACAGAC TGCAAGAGGTACGTCATGGCACAACGCCGAAGAGCACTCATTAGCACTGT ACAGTCGCCAGTATATGGTGTTCGCGCATCACAAGGCAAGGCTGTATTGG ACAGACTGCAAGAGGTACGTCATGGCACAACGCCGAAGAGCACTCATTAG CACTGTACAGTCGCCAGTACAGCTGACGTCCCCTGGACGAGCACAAGCGA CTGTTTAGCATTAATTTCGTCTCAACCTTGCATTGGGGTTAGGGTTAGAA AGGGCATGGGATAATATAAGTTGGAAAGGCCTCTTGGTCGGGTTAGGCAT AGTGGCACAGGTGGCTGGTCGGGTTAGGGTTAGGGTTAGGGTTTATGTCT AAATGGATTCTATAGGGTCAATCCCAGCTTCCTTGTACGATGCCCGTTGC AGGCTTTCGAGGTGGCTGGGACGTTCGGCGAAGGCTATAAAGGAAGTAGT AGTCATGATGATGACTGCGGTGCAGGTTTTTCGTGTCTTCGAATTGACGG GGAGGTGCCCACGGCTGTCAGGCAAGCAACCATTCTTGCCAATGATTTCG TCTTTTTATCAAGCAGCTCCTTCGTTTACACCATTCCACACCATTTACCT TGAACGGCGTAGGTTAGGTTTAGGGTTAGGGTCAGAGTTGATTAGTGGTA AATGGCTAGATGGACTGATGGACTTATGAAGTAATGAACTTAATGCCTCG AAGCCAAAGTGGTGTGATGCGTCTCCTTCATATGAGCTATAGGATCTATA CACATCACGATATAATTCTACTTGTCCTCTCCTATATCTCGATCTCGATC ATGTCTCCTCCCCTCTCCTCTCCTCGATCTTGTCTTGATTTCGATGTGGA TGTGGATGGTCATTATCGCACCCTGCGGACGTGGATGGTCATTATTAATA TACATCAAACATCTAACGTCAAACGATCCATCAAACGTCAAACATCAGGG CGTCGAGACTGACGCAGTTTAACACCGACACGCGCTGTCGCGTACTGCTG GTTTCCATCACCGCCGGCGGTCAAGGGTTGGATTTCACGGCGGCCAGCAA CGTCGTCTTCGTGGAGCTGCCAGAGAGCCCCAGTTGGCTGAGGCAGGCCG AGGACAGACTTCACCGCCGCAAGCAGGTACCGGTATATATTGTTGTAGTA AGGTGAAGGTTGATTGCCACTTCAGTGTGTCTCGAAATTTTAAATGCAGA TTGGTTTCCTCTGTGAAATGCATCTTGAGGTTTTCGTGAGCGGTTTGTCT CAACGAAATTGACTTGTTTTTTCGACGGTTCTGAGCTGCTAATGGCCATT ATCTAGACGAAATACACACGGAAGAGAAGAGACGCTATCAATAATTATAC TGATGATAATGATGATAGTGATAACGGCCATGTTTGATGCTGCAAGATAT TGCAAGATGTGTCTGAGAGAGAGAGCCCTACAGTCTCTCTCTATTTGTGT CTGGATATCCTCACTATAGTATACCCCTTCTGCTGGTTTATTGGTTTATT GGGTGGTTATTAATGCCGGACGAAACGATTAGGCTCGTGTGGTTTGAGTG ATCGCTCGTGCTGCGACCTCGTGACATCATTGCCGCAGGACAAGAGCGTT AACGTATACCTCATGGTGCTACCAGCGGGGAGTAACGACGACATTAGGTG GCTCCGCCTTAGCGAGTAAGTCAAGTATAATTGGGGTTAGGGTTACCGTC CACGTTCGACCGCTTGTCGTTTGCCGCTTTTCTTAGGGTTAGGGTTAGGG TTAGCTTCGGAATTATTTTTGCCATTTAGCGGCCAAATTGACTCGGGTTA GGATTAAGGCATGGTGTACGGTGTAGTCTAACGTCTAGTTACCCAGAGTC TTAACGCGTTGCTTCGTTGCCTGGAACATCCCCTATCCCTAACCTTAACT CTCTGTCTATGACGAATGCTATAGGAAGCTCACGACCCAAACGTCAGTGG TGAACGGTGTAGCTCAGGCCGAAAGCATCAACGTGGACAAAGTGTGCGAT GTCGACACTGTCTTGACTCTAGACAGCGGAAGTAGACGCGAAGATCCATT TCGCTCTCACCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig13186:219..3084+

>mRNA_H-elongata_contig13186.2288.1 ID=mRNA_H-elongata_contig13186.2288.1|Name=mRNA_H-elongata_contig13186.2288.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1632bp|location=Sequence derived from alignment at H-elongata_contig13186:219..3084+ (Himanthalia elongata Himel1 dioecious)
ATGCCATGTTACAGGCGGATCGTGGTTCGAGTGGTACCTCACGCGGAGGA
GCTTAAGGCTGCCCTTCAAGCTGATGCCATGTTACAGGCGGATCGTGGTT
CGAGTGGTACCTCACGCGGAGGAGCTTAAGGCTGCCCTTCAAGCTGCAGG
CGGGTTTGAACCTGATCCTGATGGTGATAATGGAGAGAGATCAACACGGC
AAACGCGGTGGGCGGGAGGCATGAGCAAGGATCAGAGGGCGGGACTGAAA
AAGCAGGCGGGTTTGAACCTGATCCTGATGGTGATAATGGAGAGAGATCA
ACACGGCAAACGCGGTGGGCGGGAGGCATGAGCAAGGATCAGAGGGCGGG
ACTGAAAAAGGTAAAGTCAGCGTCGCAGTGGGTCGTGGACAAGCTTGCTG
CTTCTGCGGAGACGAGGACAAAGTTCGTGGTGTTCGCGCATCACAAGGCT
GTATTGGACAGACTGCAAGAGGTAAAGTCAGCGTCGCAGTGGGTCGTGGA
CAAGCTTGCTGCTTCTGCGGAGACGAGGACAAAGTTCGTGGTGTTCGCGC
ATCACAAGGCTGTATTGGACAGACTGCAAGAGGCTTTCGAGGTGGCTGGG
ACGTTCGGCGAAGGCTATAAAGGAAGTAGTAGTCATGATGATGACTGCGG
TGCAGGTTTTTCGTGTCTTCGAATTGACGGGGAGGTGCCCACGGCTGTCA
GGCAAGCAACCATTCTTGCCAATGATTTCGCTTTCGAGGTGGCTGGGACG
TTCGGCGAAGGCTATAAAGGAAGTAGTAGTCATGATGATGACTGCGGTGC
AGGTTTTTCGTGTCTTCGAATTGACGGGGAGGTGCCCACGGCTGTCAGGC
AAGCAACCATTCTTGCCAATGATTTCTTTAACACCGACACGCGCTGTCGC
GTACTGCTGGTTTCCATCACCGCCGGCGGTCAAGGGTTGGATTTCACGGC
GGCCAGCAACGTCGTCTTCGTGGAGCTGCCAGAGAGCCCCAGTTGGCTGA
GGCAGGCCGAGGACAGACTTCACCGCCGCAAGCAGTTTAACACCGACACG
CGCTGTCGCGTACTGCTGGTTTCCATCACCGCCGGCGGTCAAGGGTTGGA
TTTCACGGCGGCCAGCAACGTCGTCTTCGTGGAGCTGCCAGAGAGCCCCA
GTTGGCTGAGGCAGGCCGAGGACAGACTTCACCGCCGCAAGCAGGACAAG
AGCGTTAACGTATACCTCATGGTGCTACCAGCGGGGAGTAACGACGACAT
TAGGTGGCTCCGCCTTAGCGAGACAAGAGCGTTAACGTATACCTCATGGT
GCTACCAGCGGGGAGTAACGACGACATTAGGTGGCTCCGCCTTAGCGAGA
AGCTCACGACCCAAACGTCAGTGGTGAACGGTGTAGCTCAGGCCGAAAGC
ATCAACGTGGACAAAGTGTGCGATGTCGACACTGTCTTGACTCTAGACAG
CGGAAGTAGACGCGAAGATCCATTTCGCTCTCACCGGTGAGAAGCTCACG
ACCCAAACGTCAGTGGTGAACGGTGTAGCTCAGGCCGAAAGCATCAACGT
GGACAAAGTGTGCGATGTCGACACTGTCTTGACTCTAGACAGCGGAAGTA
GACGCGAAGATCCATTTCGCTCTCACCGGTGA
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