mRNA_H-elongata_contig13164.2283.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13164.2283.1
Unique NamemRNA_H-elongata_contig13164.2283.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13164.2283.1 vs. uniprot
Match: D8LJ22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ22_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 1.680e-40
Identity = 89/157 (56.69%), Postives = 101/157 (64.33%), Query Frame = 1 
Query:    1 MRSVRGKFAKDMAPLHRAGLLWCERAAPSLLLAGESDHDSHAWSGKSAGADRTRGGLWRDCLAIVRNLALLNSNRSPVVVPSMVRIARAGSIDSQGDESTEVREVAALCDRTAVLEGEGVRSTLRLVAHPVNAPAAEMLGLLEALVLRAARSRAMYK 471
            MR VR KF KD APLHR GL+WCERAAP LLLA +S                  G LWRDCLAIVRNL LLN+ R+     S       G  D   +E+   +E AALCD T VL+GEG+RS LRL AHPVNAPA E+L LLE+LVLRAARSR M+K
Sbjct:    1 MRLVRAKFLKDFAPLHRLGLVWCERAAPPLLLADDSGEG---------------GSLWRDCLAIVRNLTLLNNARA-----SGXXXXXXGP-DGSAEEAI-AKESAALCDNTVVLDGEGMRSALRLAAHPVNAPAKELLALLESLVLRAARSRVMHK 135
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BLAST of mRNA_H-elongata_contig13164.2283.1 vs. uniprot
Match: A0A6H5L4I3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I3_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 2.650e-31
Identity = 80/150 (53.33%), Postives = 93/150 (62.00%), Query Frame = 1 
Query:   43 LHRAGLLWCERAAPSLLLAGESDHDSHAWSGKSAGADRTRGGLWRDCLAIVRNLALLNSNRSPVVVPSMVRIARAGSIDSQGDESTEVREVAALCDRTAVLEGEGVRSTLRLVAHPVNAPAAEMLGLLEALVLRAARSRAMYKAGSSSAT 492
            LHR  L+WCERAAP LLLA +S                  G LWRDCLAIVRNL LLN+ R+                D   +E+   +E AALCD T VL+GEG+RS LRL AHPVNAPA E+L LLE+LVLRAARSR M+KAGS  A+
Sbjct:  826 LHRLSLVWCERAAPPLLLADDSGEG---------------GSLWRDCLAIVRNLTLLNTARAS---GXXXXXXXXXGPDGSAEEAI-AKESAALCDNTVVLDGEGMRSALRLAAHPVNAPAKELLALLESLVLRAARSRVMHKAGSGGAS 956
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13164.2283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJ22_ECTSI1.680e-4056.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4I3_9PHAE2.650e-3153.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13164contigH-elongata_contig13164:3907..6608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_004430.1
Exons5
Model size807
Cds size807
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13164.2283.1prot_H-elongata_contig13164.2283.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13164 3907..6608 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929782.1287682-CDS-H-elongata_contig13164:3906..40191622929782.1287682-CDS-H-elongata_contig13164:3906..4019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13164 3907..4019 -
1691679155.4790797-CDS-H-elongata_contig13164:3906..40191691679155.4790797-CDS-H-elongata_contig13164:3906..4019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13164 3907..4019 -
1622929782.1457283-CDS-H-elongata_contig13164:4067..43181622929782.1457283-CDS-H-elongata_contig13164:4067..4318Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13164 4068..4318 -
1691679155.4884393-CDS-H-elongata_contig13164:4067..43181691679155.4884393-CDS-H-elongata_contig13164:4067..4318Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13164 4068..4318 -
1622929782.1862774-CDS-H-elongata_contig13164:4905..50471622929782.1862774-CDS-H-elongata_contig13164:4905..5047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13164 4906..5047 -
1691679155.4995697-CDS-H-elongata_contig13164:4905..50471691679155.4995697-CDS-H-elongata_contig13164:4905..5047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13164 4906..5047 -
1622929782.2044594-CDS-H-elongata_contig13164:5627..58861622929782.2044594-CDS-H-elongata_contig13164:5627..5886Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13164 5628..5886 -
1691679155.5115664-CDS-H-elongata_contig13164:5627..58861691679155.5115664-CDS-H-elongata_contig13164:5627..5886Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13164 5628..5886 -
1622929782.2220256-CDS-H-elongata_contig13164:6566..66081622929782.2220256-CDS-H-elongata_contig13164:6566..6608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13164 6567..6608 -
1691679155.5271966-CDS-H-elongata_contig13164:6566..66081691679155.5271966-CDS-H-elongata_contig13164:6566..6608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13164 6567..6608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13164.2283.1

>prot_H-elongata_contig13164.2283.1 ID=prot_H-elongata_contig13164.2283.1|Name=mRNA_H-elongata_contig13164.2283.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=269bp
MRSVRGKFAKDMAPLHRAGLLWCERAAPSLLLAGESDHDSHAWSGKSAGA
DRTRGGLWRDCLAIVRNLALLNSNRSPVVVPSMVRIARAGSIDSQGDEST
EVREVAALCDRTAVLEGEGVRSTLRLVAHPVNAPAAEMLGLLEALVLRAA
RSRAMYKAGSSSATSTAPYGFASAASGVGGSVATPLKRPRLAMMTSPSSA
SPPPGRAAHLGGGGGSGGIGNARSGVASTAAGSSGSMVASAGGMSASMML
SITNGDVEKGILTGVRGK*
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mRNA from alignment at H-elongata_contig13164:3907..6608-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13164.2283.1 ID=mRNA_H-elongata_contig13164.2283.1|Name=mRNA_H-elongata_contig13164.2283.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2702bp|location=Sequence derived from alignment at H-elongata_contig13164:3907..6608- (Himanthalia elongata Himel1 dioecious)
ATGCGATCGGTCCGAGGAAAGTTTGCGAAGGACATGGCTCCGGTGCGTTT
TTTTTATTTGGTTGGTTGTGTGTCTCGTGTTGGCGGCAGCCGCGACTCGT
CAGGATGAAGTTCTAGGCGTTAAAGGCGTTTGTGTTGGAGAGAATGGGGC
ACGGGGCGGAGGTGGACAAATGCTACGCGGTTGTGTGCTGGGTCACGCAC
GTTCTTGAAGGACGTAAGCGTCCCAGATGCTACGCAGTCGCTTAAAGTTT
GTACACGGCACAAGCGAGGGTGGGGTGATGCAAACAGTATGAATCCAATA
TGCTTCTCCTTATCTCCGTGTGCAGGATTCACTGTCATCGTTCATCATCT
GCGCGAAGTCGACAGGCTTTCGGATTCCCATCTTTTGGTGAATGGTTGTT
CAGTCCACACCTCTGAATCCTTCCCCCGCCCCCGACGACGCGCGCAACCC
AACGAATTTGACCTCTTCGCATGCAACGCACGTGCATCCGAGATATTTTT
TCCTGCCGACCTTTCACATAGAAGAAACTGAAAGGGACGGGAAAATTTCG
ACAGACCCGACCCGACGCGACATGGTATGTCATCCTATTTTACATAGCCT
GGACTACAAGTAAGCTCTGAAACTGACCCGGACTAAGCATCGAAATCTTA
TTTTAATAAAAGTAATTTGAAGTAGCCCAAAAGTGTTCTAAACACGCGAC
CGATTTTGTTTCGTCACGGCAGCTACACCGCGCGGGTCTGCTGTGGTGCG
AGCGGGCCGCACCATCGCTTCTCCTTGCCGGCGAGTCTGATCATGATTCT
CATGCTTGGAGTGGTAAGAGCGCCGGCGCGGACAGGACAAGAGGCGGCCT
GTGGAGGGACTGCCTGGCTATTGTCCGTAATCTAGCGCTGCTGAACAGCA
ACCGCAGCCCGGTTGTGGTGCCGAGTATGGTCAGGATCGCGCGGGCGGGA
TCCATCGACAGTCAGGGCGATGAATCGACAGGTGGGGAGCGCGCGCTTCG
AGTTCAGATATACAGGCCATTGTGCCAGATGCGGCGTGCAACGGGAGGCG
AAAGTACGATTTTGTTCTGAACCTGGGCCTTAGCGGGGAGTCGAGAGGAG
CGCGCGGCGTGTTGCGGTCGACCATTGTTTGCTAAAGGGGTATGTCCCCG
ACATTTTGTCATTACCAGGAAAAATATATATCACGAGCGAGATAGTGTGT
TGATTTTTTATTTTGGCTCTTTTTCCAGACGATCTCCGCTTCTATATATT
TTTGTTCGCCGTGAGTGACAAACCGGGAACAATGATCCCACCCTCCAAAA
TACCACACTCAAGTACTATGAATAGTCGACTGATGGGAACCTATTCTCTT
TTTCTATCTCTCTCATGAAACCGTTCGATTACGCCTTTTGAAAATGGTTC
CATTTCCCCCCGTCCTCTTGCTGCTGCGGCGCACATGTTTTTCGTTAGTT
TTCTAATTTTGCGATACTGATTTGTGTAACCACGCTTCCACTCGCTGCGA
TCGCCTGGGCCGTCAACCGGTGCTCCATAAAACGCCACGAAAAATATATA
CACGCCGACAGAAGTGCGAGAAGTAGCGGCGTTGTGTGACCGGACAGCCG
TTCTCGAGGGGGAAGGAGTGCGGTCGACCCTCAGGCTGGTTGCTCACCCG
GTCAACGCCCCCGCCGCGGAGATGCTCGGGCTTCTTGAGGCTCTCGTCCT
GAGGTAAATCGTACAAGTAAAACAAATGAGCAAATACTCAAGTTTCGGGA
GCAGGTTGGGAGGGGTGAAAGACACGAAGCCGTACTGCCTGCGTGGCGCG
ATCCTGGTGTACTTGACCGCGTGGGGCTTTTCCGAGTATATATTTTTGTC
TTTGCTGTCATGGCGTTTCGGTGTGTATTGTACGAGATCAAGAAACGGGC
GACGTTCCCTTCTGCCCCCTGCTCGCTCGCCTGTCTATGAGGTATCTTCA
CCTAGTTTAATCCTTTAAGACTCGGTTACGGCCTACGGTCGGGAGTCGCC
GTGTATGTTTTAGGGACACTTAAGGGGCAAAGGTGTAGTTCTTCCAATCA
ATGCCCAAAACCCTCCAGTACGCGCCCGGGTGCGCCTGAAGGATACGATG
CGATGACGTCGCGCGGGGTTAGATGACGGTCTTCTCTGTTGTATTTTTTT
GTTGCGTAACCGATCATATCTCCCCCTTTGGCTGTCATATTTCCTAGTAG
ATTCGACATACTCATACCACCACCCCGAGCTCACATTTTTCTTGCCACAC
TCCCTCGCGCTATCAAACTCGCCGAATCGCCGTGGAACAGGGCCGCTAGA
AGCCGCGCGATGTACAAGGCAGGCAGCAGTAGCGCCACCTCCACTGCTCC
ATACGGATTCGCCTCCGCCGCTAGTGGCGTCGGAGGTTCTGTGGCGACCC
CGCTCAAAAGACCACGACTCGCGATGATGACGTCACCATCATCAGCAAGC
CCCCCACCCGGGCGAGCCGCACACCTCGGAGGTGGTGGGGGAAGTGGGGG
TATTGGTAACGCGCGAAGTGGAGTGGCGAGTACAGCCGCTGGTTCCGGAT
CGCTGCCGCCGGTTGGTTTGGGTGTGTTAATGCGCCAAGGATCGTCGGGT
TCTATGGTCGCCTCGGCGGGAGGGATGTCAGCCTCGATGATGTTGTCCAT
CACAAATGGGGACGTGGAAAAAGGCATCCTTACAGGGGTGAGAGGAAAAT
GA
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Coding sequence (CDS) from alignment at H-elongata_contig13164:3907..6608-

>mRNA_H-elongata_contig13164.2283.1 ID=mRNA_H-elongata_contig13164.2283.1|Name=mRNA_H-elongata_contig13164.2283.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1614bp|location=Sequence derived from alignment at H-elongata_contig13164:3907..6608- (Himanthalia elongata Himel1 dioecious)
ATGCGATCGGTCCGAGGAAAGTTTGCGAAGGACATGGCTCCGATGCGATC
GGTCCGAGGAAAGTTTGCGAAGGACATGGCTCCGCTACACCGCGCGGGTC
TGCTGTGGTGCGAGCGGGCCGCACCATCGCTTCTCCTTGCCGGCGAGTCT
GATCATGATTCTCATGCTTGGAGTGGTAAGAGCGCCGGCGCGGACAGGAC
AAGAGGCGGCCTGTGGAGGGACTGCCTGGCTATTGTCCGTAATCTAGCGC
TGCTGAACAGCAACCGCAGCCCGGTTGTGGTGCCGAGTATGGTCAGGATC
GCGCGGGCGGGATCCATCGACAGTCAGGGCGATGAATCGACAGCTACACC
GCGCGGGTCTGCTGTGGTGCGAGCGGGCCGCACCATCGCTTCTCCTTGCC
GGCGAGTCTGATCATGATTCTCATGCTTGGAGTGGTAAGAGCGCCGGCGC
GGACAGGACAAGAGGCGGCCTGTGGAGGGACTGCCTGGCTATTGTCCGTA
ATCTAGCGCTGCTGAACAGCAACCGCAGCCCGGTTGTGGTGCCGAGTATG
GTCAGGATCGCGCGGGCGGGATCCATCGACAGTCAGGGCGATGAATCGAC
AGAAGTGCGAGAAGTAGCGGCGTTGTGTGACCGGACAGCCGTTCTCGAGG
GGGAAGGAGTGCGGTCGACCCTCAGGCTGGTTGCTCACCCGGTCAACGCC
CCCGCCGCGGAGATGCTCGGGCTTCTTGAGGCTCTCGTCCTGAGAAGTGC
GAGAAGTAGCGGCGTTGTGTGACCGGACAGCCGTTCTCGAGGGGGAAGGA
GTGCGGTCGACCCTCAGGCTGGTTGCTCACCCGGTCAACGCCCCCGCCGC
GGAGATGCTCGGGCTTCTTGAGGCTCTCGTCCTGAGGGCCGCTAGAAGCC
GCGCGATGTACAAGGCAGGCAGCAGTAGCGCCACCTCCACTGCTCCATAC
GGATTCGCCTCCGCCGCTAGTGGCGTCGGAGGTTCTGTGGCGACCCCGCT
CAAAAGACCACGACTCGCGATGATGACGTCACCATCATCAGCAAGCCCCC
CACCCGGGCGAGCCGCACACCTCGGAGGTGGTGGGGGAAGTGGGGGTATT
GGTAACGCGCGAAGTGGAGTGGCGAGTACAGCCGCTGGGCCGCTAGAAGC
CGCGCGATGTACAAGGCAGGCAGCAGTAGCGCCACCTCCACTGCTCCATA
CGGATTCGCCTCCGCCGCTAGTGGCGTCGGAGGTTCTGTGGCGACCCCGC
TCAAAAGACCACGACTCGCGATGATGACGTCACCATCATCAGCAAGCCCC
CCACCCGGGCGAGCCGCACACCTCGGAGGTGGTGGGGGAAGTGGGGGTAT
TGGTAACGCGCGAAGTGGAGTGGCGAGTACAGCCGCTGGATCGTCGGGTT
CTATGGTCGCCTCGGCGGGAGGGATGTCAGCCTCGATGATGTTGTCCATC
ACAAATGGGGACGTGGAAAAAGGCATCCTTACAGGGGTGAGAGGAAAATG
AGATCGTCGGGTTCTATGGTCGCCTCGGCGGGAGGGATGTCAGCCTCGAT
GATGTTGTCCATCACAAATGGGGACGTGGAAAAAGGCATCCTTACAGGGG
TGAGAGGAAAATGA
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