mRNA_H-elongata_contig131522.2277.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131522.2277.1
Unique NamemRNA_H-elongata_contig131522.2277.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131522.2277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131522contigH-elongata_contig131522:1558..1756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size179
Cds size159
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131522.2277.1prot_H-elongata_contig131522.2277.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131522 1558..1738 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929781.533679-CDS-H-elongata_contig131522:1557..16481622929781.533679-CDS-H-elongata_contig131522:1557..1648Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131522 1558..1648 -
1691679155.2254083-CDS-H-elongata_contig131522:1557..16481691679155.2254083-CDS-H-elongata_contig131522:1557..1648Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131522 1558..1648 -
1622929781.549714-CDS-H-elongata_contig131522:1670..17381622929781.549714-CDS-H-elongata_contig131522:1670..1738Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131522 1671..1738 -
1691679155.2379038-CDS-H-elongata_contig131522:1670..17381691679155.2379038-CDS-H-elongata_contig131522:1670..1738Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131522 1671..1738 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929781.5648816-UTR-H-elongata_contig131522:1738..17561622929781.5648816-UTR-H-elongata_contig131522:1738..1756Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131522 1739..1756 -
1691679155.2493713-UTR-H-elongata_contig131522:1738..17561691679155.2493713-UTR-H-elongata_contig131522:1738..1756Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131522 1739..1756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131522.2277.1

>prot_H-elongata_contig131522.2277.1 ID=prot_H-elongata_contig131522.2277.1|Name=mRNA_H-elongata_contig131522.2277.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MSPIALDRWFLGRWCLTALLANRCVTLRLSSTFLNLNLKFPIFAELLVSK
SMP
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mRNA from alignment at H-elongata_contig131522:1558..1756-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131522.2277.1 ID=mRNA_H-elongata_contig131522.2277.1|Name=mRNA_H-elongata_contig131522.2277.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=199bp|location=Sequence derived from alignment at H-elongata_contig131522:1558..1756- (Himanthalia elongata Himel1 dioecious)
CTCCCTTGTACACTGGCGATGTCCCCTATCGCTCTCGACCGGTGGTTCCT
CGGTCGGTGGTGTCTCACGGCACTCCTGGCCAATCGGTGGTCACGTCCAA
GCTTTTAGCTGCGTGACCCTTCGTCTTAGCTCCACCTTTCTTAACTTGAA
CTTGAAGTTCCCAATTTTTGCAGAACTACTAGTCTCGAAATCGATGCCC
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Coding sequence (CDS) from alignment at H-elongata_contig131522:1558..1756-

>mRNA_H-elongata_contig131522.2277.1 ID=mRNA_H-elongata_contig131522.2277.1|Name=mRNA_H-elongata_contig131522.2277.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig131522:1558..1756- (Himanthalia elongata Himel1 dioecious)
ATGTCCCCTATCGCTCTCGACCGGTGGTTCCTCGGTCGGTGGTGTCTCAC
GGCACTCCTGGCCAATCGATGTCCCCTATCGCTCTCGACCGGTGGTTCCT
CGGTCGGTGGTGTCTCACGGCACTCCTGGCCAATCGCTGCGTGACCCTTC
GTCTTAGCTCCACCTTTCTTAACTTGAACTTGAAGTTCCCAATTTTTGCA
GAACTACTAGTCTCGAAATCGATGCCCCTGCGTGACCCTTCGTCTTAGCT
CCACCTTTCTTAACTTGAACTTGAAGTTCCCAATTTTTGCAGAACTACTA
GTCTCGAAATCGATGCCC
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