mRNA_H-elongata_contig13148.2272.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13148.2272.1
Unique NamemRNA_H-elongata_contig13148.2272.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: D7G466_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G466_ECTSI)

HSP 1 Score: 317 bits (811), Expect = 8.710e-102
Identity = 155/217 (71.43%), Postives = 182/217 (83.87%), Query Frame = 2
Query:   17 QARNAISQMSDSDLMGRPILVREYVGDGGNFGHGVGGGAGARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDREEGSAASKSMGPMGSRHPGAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQ 667
            +ARNAISQ+S+++LMGRPI VRE  GD GN G GVGG AGA+V+VGNL+W  QWQDLKD+MR AG+VK VDLFQEPGGRSKGCAVVEYETPQ AH+AIR+LHDTEL GR++FVREDREEG   SK +G +   H GAEGRQV+V N+SWE+GWQ LKDHF+Q G VQFVEIPED QGRS+G+ATVRF SEQ A  AI++L+ T+L GRRI VR DN+
Sbjct:  222 EARNAISQLSETELMGRPIQVREERGDAGNHGRGVGGAAGAKVYVGNLSWECQWQDLKDHMRAAGSVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPIGSKRIGQL---HEGAEGRQVHVSNVSWETGWQSLKDHFKQCGRVQFVEIPEDAQGRSKGYATVRFGSEQDAADAINQLDGTDLDGRRIGVREDNR 435          
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: L1ITL9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1ITL9_GUITC)

HSP 1 Score: 189 bits (481), Expect = 1.200e-55
Identity = 99/186 (53.23%), Postives = 122/186 (65.59%), Query Frame = 2
Query:  122 GGGAGARVFVGNLAWGVQWQDLKDYMR---QAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDREEGSAASKSMGPMGSRHPGAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQL 670
            G G G RV+VGNL+W  QWQDLKD+MR   Q  NV   D+  E GGRSKGCA+VEY +P+ A  AI  L+DTE+ GR++FVREDRE         G MG+      GR+VYVGNLSWE  WQDLKDH R  G+V   ++     GRS+G   V F+S + A RAI ELN+TEL GR I+VR D ++
Sbjct:    7 GPGLGCRVYVGNLSWDAQWQDLKDHMRGPNQNLNVVHADIMYEAGGRSKGCAIVEYASPEDAQRAIAELNDTEMMGRLIFVREDRE------GFKGGMGTG-----GRRVYVGNLSWECKWQDLKDHMRTAGNVLHADVMTGPDGRSKGCGLVEFSSPEEAVRAIQELNETELMGRMIFVREDREM 181          
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: I2CPF4_NANGC (Rnp domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPF4_NANGC)

HSP 1 Score: 188 bits (477), Expect = 6.730e-55
Identity = 100/196 (51.02%), Postives = 125/196 (63.78%), Query Frame = 2
Query:  125 GGAGARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDREEGSAASKSMGPMG-------SRH-------PGAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQL 670
            GG G RV+VGNL++ V WQDLKD+MR+ GNV   D+ ++  GRSKGC +VEY+ P GA  AIR L++T+L GR++FVREDRE+     K  GPMG       S H       P A GRQ+YVGNL +E  WQ LKDHF+    VQ  E+  D +GRSRG  TVRF +   A RA + LN T L  R I VR DN++
Sbjct:    2 GGVGTRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHEGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDRED----KKMGGPMGGGFQGGASMHRVGVGGPPSAAGRQLYVGNLDFEITWQGLKDHFKGF-DVQRAEVAYDAEGRSRGFGTVRFGTAAEAQRAQEALNGTNLNNRTIEVREDNRV 192          
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: A0A3R7H492_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H492_9STRA)

HSP 1 Score: 192 bits (489), Expect = 1.880e-54
Identity = 106/222 (47.75%), Postives = 140/222 (63.06%), Query Frame = 2
Query:   20 ARNAISQMSDSDLMGRPILVRE-----YVGDGGNFGHGVGGGAGARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDRE-EGSAASKSMGPMGSRHPGAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQ 667
            A+NAI+ ++D++L  R I VRE      V              G RV+VGNL W V+WQ+LKD+M+QAG V   D+ +E GGRSKGC +VEY T + A+ AI  L++TEL GR++FVREDRE EG + SK      +   G EGRQ+YVGNL W++ WQ LKD FR VG V+  +I E   GRSRG   +R+A+   A +AI+ LN  E+ GR I VR D +
Sbjct:  156 AQNAIATLNDTELGERKIFVREDRETQAVAT-------TKPKRGFRVYVGNLPWNVKWQELKDHMKQAGTVVHADVLEEAGGRSKGCGLVEYATEEEANNAIAQLNNTELEGRLIFVREDREPEGGSISKFAKRTAAPRNGGEGRQLYVGNLPWDTNWQQLKDLFRTVGEVERADIAEYPDGRSRGFGIIRYANPAHAFQAIERLNGLEIEGRLIEVRLDKK 370          
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: H3GHR3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GHR3_PHYRM)

HSP 1 Score: 189 bits (480), Expect = 1.890e-53
Identity = 104/217 (47.93%), Postives = 137/217 (63.13%), Query Frame = 2
Query:   20 ARNAISQMSDSDLMGRPILVREYVGDGGNFGHGVGGGAGARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDRE-EGSAASKSMGPMGSRHPGAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQ 667
            A+NAI  ++DS+L GR I VRE           V    G RV+VGNL+W V+WQ+LKD+M++AG V   D+ +E  GRSKGC +VEY T   A+ AI  L+++EL GR++FVREDRE EG + SK      +     EGRQ+YVGNL WE+ WQ LKD FR VG V+  +I E   GRSRG   +R+ +   A +AI+ LN  E+ GR I VR D +
Sbjct:  127 AQNAIDTLNDSELGGRKIFVREDRETQPIAA--VKPKRGFRVYVGNLSWNVKWQELKDHMKKAGTVVHADVLEESNGRSKGCGLVEYATQDEANKAIAELNNSELEGRLIFVREDREPEGGSISKLAKRAAAPRGNGEGRQLYVGNLPWETNWQQLKDLFRTVGEVERADIAEYPDGRSRGFGIIRYTNAADAWQAIERLNGLEIEGRLIEVRLDKR 341          
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: A0A0P1AA48_PLAHL (Rna-binding protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AA48_PLAHL)

HSP 1 Score: 188 bits (478), Expect = 3.740e-53
Identity = 104/223 (46.64%), Postives = 142/223 (63.68%), Query Frame = 2
Query:   20 ARNAISQMSDSDLMGRPILVRE-----YVGDGGNFGHGVGGGAGARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDRE-EGSAASKSMGPMGSRHPG-AEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQ 667
            A+ AIS ++D++L GR I VRE     +V  G           G RV+VGNL+W V+WQ+LKD+M++AG V   D+ +   GRSKGC +VEY TP+ A  AI  L++TEL+GR++FVREDRE EG + SK      +   G  EGRQ+YVGNL W++ WQ LKD FR VG V+  +I E   GRSRG   +R+ +   A +AI+ +N  E+ GR+I VR D +
Sbjct:  126 AQEAISTLNDTELGGRKIFVREDRESQFVAAGKPK-------RGFRVYVGNLSWTVKWQELKDHMKKAGTVVHADVLELANGRSKGCGLVEYSTPEEAATAIAELNNTELDGRLIFVREDREPEGGSISKFAKRSNAPSRGNGEGRQLYVGNLPWDTNWQQLKDLFRTVGEVERADIAEYPDGRSRGFGIIRYTTAADAWQAIERMNGMEVEGRQIEVRLDKK 341          
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: A0A8K1CTK2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTK2_PYTOL)

HSP 1 Score: 189 bits (479), Expect = 4.490e-53
Identity = 102/207 (49.28%), Postives = 130/207 (62.80%), Query Frame = 2
Query:   68 PILVREYVGDGGNFGHGVGGGAGARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDREEGSAASKSMGPMGSRHPGAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQL*GQDIA 688
            P   R  VG+    G G  GGAG RV+VGNL+W V+WQDLKD+MR AG V+R  +  E  GRSKGC +V Y T   AH AI  L+DTEL+GR +FVREDREE +       P  +R    +G +VYVGNLSW   WQDLKDH +  G+V   ++ E+  GRS+G   V +++   A  AI  LNDTEL GR+I+VR D +  G  I+
Sbjct:   49 PRNARYGVGETPGNGEGGDGGAGRRVYVGNLSWNVKWQDLKDHMRAAGEVERASIM-ESNGRSKGCGLVTYVTEVDAHRAIETLNDTELDGRKIFVREDREEST-------PNWTR--ATKGCRVYVGNLSWNVKWQDLKDHMKLAGTVVHADVLEEPNGRSKGCGLVEYSTPDEAQHAIMSLNDTELEGRKIFVREDREPDGGSIS 245          
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: R1FPR2_EMIHU (RNA-binding protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FPR2_EMIHU)

HSP 1 Score: 186 bits (473), Expect = 2.340e-52
Identity = 106/229 (46.29%), Postives = 131/229 (57.21%), Query Frame = 2
Query:   20 ARNAISQMSDSDLMGRPILVREYVGDGGNFGHGVGGGA--GARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPG-GRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDREEGSAASKSMGPMGSRHPGAE------------GRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHD 661
            A+NAI  + D++L GRPI VRE    G       GGG   G  V+VGNLA+ V WQDLKD+ +Q G+V R D+  E G GRSKGC +V + +P+ A  AI  LHDT+L GR +FVREDRE G+                             G QVYVGNLSW+  WQDLKDHF+Q G V   E+ +   GRSRG  TV F+S   A RAI + N++   GR I VR D
Sbjct:  116 AQNAIEMLHDTELKGRPIFVREDREAGAPQSSSRGGGTAPGCSVYVGNLAYEVSWQDLKDHCKQVGDVVRADVLLENGTGRSKGCGIVVFGSPKDAKTAIDTLHDTDLKGRAIFVREDREAGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCQVYVGNLSWDCKWQDLKDHFKQAGDVIRAEVKDGADGRSRGFGTVLFSSAMDAARAIQKFNESNFMGRPILVRPD 344          
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: A0A7S2KX18_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KX18_9STRA)

HSP 1 Score: 190 bits (482), Expect = 4.270e-52
Identity = 91/176 (51.70%), Postives = 117/176 (66.48%), Query Frame = 2
Query:  140 RVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDREEGSAASKSMGPMGSRHPGAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQ 667
            R++VGNL+W V W++LKD+M+ AG+V R D+ Q P GRSKGC +VE+ T + A  A+  L+D+EL GR +FVREDRE   AA             A  ++VYVGNL++E  WQDLKDH R  G VQF E+     GRS+G   V FA E+GA  AID LNDTEL GR+I+VR D +
Sbjct:   91 RLYVGNLSWSVSWRELKDHMKSAGDVTRADILQTPDGRSKGCGIVEFATAEEASNAVETLNDSELMGRQIFVREDREAEKAAD------------ASSKRVYVGNLAYEVAWQDLKDHMRDAGEVQFAEVMMMNDGRSKGCGIVEFADEEGAQNAIDTLNDTELCGRQIFVREDRE 254          
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: A0A484EGA9_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGA9_BRELC)

HSP 1 Score: 185 bits (470), Expect = 5.710e-52
Identity = 104/217 (47.93%), Postives = 138/217 (63.59%), Query Frame = 2
Query:   20 ARNAISQMSDSDLMGRPILVREYVGDGGNFGHGVGGGAGARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDRE-EGSAASKSMGPMGSRHP--GAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHD 661
            A+NAI+ ++D++L GR I VRE           V    G RV+VGNL+W V+WQ+LKD+M+Q G V   D+ +   GRSKGC +VEY T + A  AI  L++TEL GR++FVREDRE EG + SK +    S  P    +GRQ+YVGNL W++ WQ LKD FR VG V+  +I E   GRSRG   +RF +   A +AI++LN  E+ GR I VR D
Sbjct:  126 AQNAIASLNDTELGGRKIFVREDRES--QSVSAVKPKRGLRVYVGNLSWTVKWQELKDHMKQVGTVVHADVLELSNGRSKGCGLVEYSTEEEAALAISELNNTELEGRLIFVREDREPEGGSISKFV-KRASAPPRVNGDGRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYSDGRSRGFGIIRFTNAADACQAIEQLNGLEVEGRMIEVRLD 339          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G466_ECTSI8.710e-10271.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
L1ITL9_GUITC1.200e-5553.23Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
I2CPF4_NANGC6.730e-5551.02Rnp domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A3R7H492_9STRA1.880e-5447.75Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
H3GHR3_PHYRM1.890e-5347.93Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A0P1AA48_PLAHL3.740e-5346.64Rna-binding protein n=1 Tax=Plasmopara halstedii T... [more]
A0A8K1CTK2_PYTOL4.490e-5349.28Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
R1FPR2_EMIHU2.340e-5246.29RNA-binding protein n=1 Tax=Emiliania huxleyi TaxI... [more]
A0A7S2KX18_9STRA4.270e-5251.70Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A484EGA9_BRELC5.710e-5247.93Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13148contigH-elongata_contig13148:5624..7924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score306.6
Seed ortholog evalue9e-81
Seed eggNOG ortholog2880.D7G466
EggNOG free text desc.RNA binding
EggNOG OGsKOG0118@1,KOG0118@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-02_001450.1
Exons4
Model size1127
Cds size633
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13148.2272.1prot_H-elongata_contig13148.2272.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13148 5664..7470 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929781.0200322-UTR-H-elongata_contig13148:5623..56631622929781.0200322-UTR-H-elongata_contig13148:5623..5663Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13148 5624..5663 +
1691679155.0976872-UTR-H-elongata_contig13148:5623..56631691679155.0976872-UTR-H-elongata_contig13148:5623..5663Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13148 5624..5663 +
1622929781.1091378-UTR-H-elongata_contig13148:7470..79241622929781.1091378-UTR-H-elongata_contig13148:7470..7924Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13148 7471..7924 +
1691679155.1474102-UTR-H-elongata_contig13148:7470..79241691679155.1474102-UTR-H-elongata_contig13148:7470..7924Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13148 7471..7924 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929781.0370693-CDS-H-elongata_contig13148:5663..58281622929781.0370693-CDS-H-elongata_contig13148:5663..5828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13148 5664..5828 +
1691679155.1091769-CDS-H-elongata_contig13148:5663..58281691679155.1091769-CDS-H-elongata_contig13148:5663..5828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13148 5664..5828 +
1622929781.0591881-CDS-H-elongata_contig13148:6200..63681622929781.0591881-CDS-H-elongata_contig13148:6200..6368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13148 6201..6368 +
1691679155.117772-CDS-H-elongata_contig13148:6200..63681691679155.117772-CDS-H-elongata_contig13148:6200..6368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13148 6201..6368 +
1622929781.0773869-CDS-H-elongata_contig13148:6706..68201622929781.0773869-CDS-H-elongata_contig13148:6706..6820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13148 6707..6820 +
1691679155.130611-CDS-H-elongata_contig13148:6706..68201691679155.130611-CDS-H-elongata_contig13148:6706..6820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13148 6707..6820 +
1622929781.0895596-CDS-H-elongata_contig13148:7284..74701622929781.0895596-CDS-H-elongata_contig13148:7284..7470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13148 7285..7470 +
1691679155.1396627-CDS-H-elongata_contig13148:7284..74701691679155.1396627-CDS-H-elongata_contig13148:7284..7470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13148 7285..7470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13148.2272.1

>prot_H-elongata_contig13148.2272.1 ID=prot_H-elongata_contig13148.2272.1|Name=mRNA_H-elongata_contig13148.2272.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=211bp
MSDSDLMGRPILVREYVGDGGNFGHGVGGGAGARVFVGNLAWGVQWQDLK
DYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNG
RMMFVREDREEGSAASKSMGPMGSRHPGAEGRQVYVGNLSWESGWQDLKD
HFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGR
RIYVRHDNQL*
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mRNA from alignment at H-elongata_contig13148:5624..7924+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13148.2272.1 ID=mRNA_H-elongata_contig13148.2272.1|Name=mRNA_H-elongata_contig13148.2272.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2301bp|location=Sequence derived from alignment at H-elongata_contig13148:5624..7924+ (Himanthalia elongata Himel1 dioecious)
CATCCGCCTCGCTACCCAGGCAAGAAACGCGATCAGCCAGATGAGTGACA GCGATCTCATGGGTCGTCCTATTCTAGTGCGAGAATACGTCGGCGATGGC GGCAACTTTGGACATGGGGTGGGAGGAGGTGCCGGTGCCCGCGTTTTCGT TGGGAACCTCGCCTGGGGAGTCCAGTGGCAGGACCTGAAGGACTATATGC GTCAGGCAAGCCATCATTGAGATTGCCAAAAGTAAAGGAAATCACGTCTT GGCTGCTGTATAAGCGCGCGCGGAGTGAAGCCCCAGTCTGTCATTCATTT TCTCCCCAACATGCTGTCAATCAAACAATCGAAGTCAAGTGTTGTGCTTA TTATTTTTGGGGTGGCAATTAGTTTGAACATAGCTTTATACATAAACCTC GCCATGGACAATATGAACTTCGCCATTAAAAGGTTTGCACACGTTGATGA TGCACAATACAGCTATGCACAGAGATCATCACGTGTAATTTTTGACGAAG GCATCACCCGACGAAACAAGAAAAATGTAATTCGTGAAGTTCAGCTGCGC CCTCGATGTCTGGTTGTGTGCCATCAGGCCGGCAATGTCAAACGCGTGGA TCTCTTCCAGGAACCCGGAGGACGCTCGAAAGGGTGTGCTGTGGTGGAAT ATGAAACCCCGCAGGGAGCACATGCTGCCATTCGCAATCTCCATGATACA GAGCTGAATGGGCGCATGATGTTTGTCAGAGAGGATCGCGAGGAGGTGAA CTGGGCGAAGCTCTCGTGGAACCTCATTCATGCTTCTTGAGTCGTTCGAG AGCGATTTTCGTAGAAATAGTTCCGCAACTAATAACACAGAAAAACCCCT CAGGGGAATGAGTAAAATGTTCCGAGGAGATATTCACCCCTTTCCGTTCG TCACAGATTGTAAACCCTGATGTTTGACGGGCCAGTATAAGCTACTTATA TGTACTCTTTTGATGTTGTATAGCGTTGATAGTGATGGCGTGTATGCACT CTATTAATACCCAAGTGCCATAAATATATATATATATATATATATATATT CCACGTTTGAAATAAACGCTGGCGGCCCTGCAGGGCTCTGCGGCGAGCAA GAGCATGGGACCAATGGGCTCAAGGCATCCTGGAGCTGAGGGAAGGCAGG TGTACGTGGGTAACCTATCTTGGGAAAGTGGTTGGCAAGATCTCAAGGTA AGGCTCCATGGTACTTGTACGATGAAATCGCGTGCTATAGAAATATTTTG GCCCTAGCAGCCGCACGCCATTTTTTCCGTAATTTGATACCCTCGAGGCT CAAAAGTGCACAAAAATTACTCCTGTTGAGATTGTGATCAGGGTGTGCAT TTCCATAATGAAAAACACCCGCCCAAGGGTATGGACCAGCAGAATCAGCT AGAGAGATACTGTGCTCTTGATGCAGACTCGTTTTTCTCATCTAAAGGAA TCCATGAGATGGAATCCACGAGTATGTTCTGGCAGCTTCTCGGCGGCTCT GTCGTGCAGCTTCTCAAACGTGGTCTCAAAAATGGTAATAACATATTATA CAAAATAGTATTGGTAGTCTCGACGCGAGATACCGGGCTGTTGTGGTCCT GCGGGTGTGTACTTACCCCGCCTTTGCACCCCCACGTGCATTTTATCGTG TTCCGGTACAGGATCATTTCAGGCAAGTCGGGTCCGTCCAGTTTGTCGAG ATACCCGAGGACGTCCAAGGCCGCTCCAGAGGACATGCCACCGTACGATT TGCCTCCGAACAAGGAGCTAACCGCGCAATTGATGAGCTGAACGACACTG AGCTTGGTGGTCGTCGTATTTACGTACGCCATGATAATCAGCTGTAAGGA CAGGATATAGCTATCAGCTCCAACGACAGAGGATTGCCATCTTAGCTTTT AGCCACAACCCTGCGACGTCTTAGGGGGTATCATGTACAAAACATCCTAG AGATGTTCACAAATTCAGGACGAGGCGCTGTTTTGGGGGAAGGAATACAA GACGGAATATCCTCAGGAATATCCTCTGGGGGAGTAGAAGCAGGATCCTC GAGTGCGTCAAAGTTGAGACGATTTTCTCGTGTTCTTTATACTTGTATAT CCCGTGTCTACGAAACTAAAAAAGAGTACTGCTTTGCATCTGAAACGGGA CGCAAGGACTGAGCTGAGCAGATACCTGGCGATAATGTTTCTCGTTCCAG CTACTCTACTCTTTTACCCATTTACCGATTTACTGTACTCATCATTCGGT TCTGTGGTACGGTTGTACCTTTGAATAAATGTGGCCCATATATTAGTACG G
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Coding sequence (CDS) from alignment at H-elongata_contig13148:5624..7924+

>mRNA_H-elongata_contig13148.2272.1 ID=mRNA_H-elongata_contig13148.2272.1|Name=mRNA_H-elongata_contig13148.2272.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1266bp|location=Sequence derived from alignment at H-elongata_contig13148:5624..7924+ (Himanthalia elongata Himel1 dioecious)
ATGAGTGACAGCGATCTCATGGGTCGTCCTATTCTAGTGCGAGAATACGT
CGGCGATGGCGGCAACTTTGGACATGGGGTGGGAGGAGGTGCCGGTGCCC
GCGTTTTCGTTGGGAACCTCGCCTGGGGAGTCCAGTGGCAGGACCTGAAG
GACTATATGCGTCAGATGAGTGACAGCGATCTCATGGGTCGTCCTATTCT
AGTGCGAGAATACGTCGGCGATGGCGGCAACTTTGGACATGGGGTGGGAG
GAGGTGCCGGTGCCCGCGTTTTCGTTGGGAACCTCGCCTGGGGAGTCCAG
TGGCAGGACCTGAAGGACTATATGCGTCAGGCCGGCAATGTCAAACGCGT
GGATCTCTTCCAGGAACCCGGAGGACGCTCGAAAGGGTGTGCTGTGGTGG
AATATGAAACCCCGCAGGGAGCACATGCTGCCATTCGCAATCTCCATGAT
ACAGAGCTGAATGGGCGCATGATGTTTGTCAGAGAGGATCGCGAGGAGGC
CGGCAATGTCAAACGCGTGGATCTCTTCCAGGAACCCGGAGGACGCTCGA
AAGGGTGTGCTGTGGTGGAATATGAAACCCCGCAGGGAGCACATGCTGCC
ATTCGCAATCTCCATGATACAGAGCTGAATGGGCGCATGATGTTTGTCAG
AGAGGATCGCGAGGAGGGCTCTGCGGCGAGCAAGAGCATGGGACCAATGG
GCTCAAGGCATCCTGGAGCTGAGGGAAGGCAGGTGTACGTGGGTAACCTA
TCTTGGGAAAGTGGTTGGCAAGATCTCAAGGGCTCTGCGGCGAGCAAGAG
CATGGGACCAATGGGCTCAAGGCATCCTGGAGCTGAGGGAAGGCAGGTGT
ACGTGGGTAACCTATCTTGGGAAAGTGGTTGGCAAGATCTCAAGGATCAT
TTCAGGCAAGTCGGGTCCGTCCAGTTTGTCGAGATACCCGAGGACGTCCA
AGGCCGCTCCAGAGGACATGCCACCGTACGATTTGCCTCCGAACAAGGAG
CTAACCGCGCAATTGATGAGCTGAACGACACTGAGCTTGGTGGTCGTCGT
ATTTACGTACGCCATGATAATCAGCTGTAAGATCATTTCAGGCAAGTCGG
GTCCGTCCAGTTTGTCGAGATACCCGAGGACGTCCAAGGCCGCTCCAGAG
GACATGCCACCGTACGATTTGCCTCCGAACAAGGAGCTAACCGCGCAATT
GATGAGCTGAACGACACTGAGCTTGGTGGTCGTCGTATTTACGTACGCCA
TGATAATCAGCTGTAA
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