mRNA_H-elongata_contig13148.2271.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13148.2271.1
Unique NamemRNA_H-elongata_contig13148.2271.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13148.2271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13148contigH-elongata_contig13148:2587..3213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size516
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13148.2271.1prot_H-elongata_contig13148.2271.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13148 2684..3067 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929780.9311156-UTR-H-elongata_contig13148:2586..26831622929780.9311156-UTR-H-elongata_contig13148:2586..2683Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13148 2587..2683 -
1691679155.055045-UTR-H-elongata_contig13148:2586..26831691679155.055045-UTR-H-elongata_contig13148:2586..2683Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13148 2587..2683 -
1622929780.9787602-UTR-H-elongata_contig13148:3067..32131622929780.9787602-UTR-H-elongata_contig13148:3067..3213Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13148 3068..3213 -
1691679155.0856123-UTR-H-elongata_contig13148:3067..32131691679155.0856123-UTR-H-elongata_contig13148:3067..3213Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13148 3068..3213 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929780.947731-CDS-H-elongata_contig13148:2683..28701622929780.947731-CDS-H-elongata_contig13148:2683..2870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13148 2684..2870 -
1691679155.0679452-CDS-H-elongata_contig13148:2683..28701691679155.0679452-CDS-H-elongata_contig13148:2683..2870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13148 2684..2870 -
1622929780.9654245-CDS-H-elongata_contig13148:2981..30671622929780.9654245-CDS-H-elongata_contig13148:2981..3067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13148 2982..3067 -
1691679155.0776002-CDS-H-elongata_contig13148:2981..30671691679155.0776002-CDS-H-elongata_contig13148:2981..3067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13148 2982..3067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13148.2271.1

>prot_H-elongata_contig13148.2271.1 ID=prot_H-elongata_contig13148.2271.1|Name=mRNA_H-elongata_contig13148.2271.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MSSCWDAKTKHVKWALNRTFKNHSNPPMKVGVKEKGGKLFYFGILRSSRG
VNIIMLPRWRGEQKHEWEKRRSKTTTLSRGLKKKIKEHFS*
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mRNA from alignment at H-elongata_contig13148:2587..3213-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13148.2271.1 ID=mRNA_H-elongata_contig13148.2271.1|Name=mRNA_H-elongata_contig13148.2271.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=627bp|location=Sequence derived from alignment at H-elongata_contig13148:2587..3213- (Himanthalia elongata Himel1 dioecious)
ATAATATATATAAAACATCAGTATGAAATAATTATAACCCTCCGAACACC
CACGCTTTCTTAGCACCGTGAGAGGTGCAGTACAGGGAACCAACTATCGT
CAGTTTCGAGTGTGTACATTACTACCTTTGAGCACAAAATCGCCACATGT
CATCATGTTGGGACGCCAAAACGAAGCATGTAAAGTGGGCTCTAAATAGA
ACATTTAAAAATCATTCAAACCCTCCGATGAAGTTCTGGGGATCAAATAT
CTTCAGGTTCCAGTGTGTACATTACTACTTATGAGGACAAAATCCTTACA
GGTCACCATGTTGGGACGCCAAACCGGAACGTATAAAGTATAGAGTAGGC
GTTAAAGAAAAGGGGGGGAAGCTATTTTATTTTGGGATATTAAGGAGTTC
TAGAGGTGTTAATATCATTATGCTACCAAGGTGGCGCGGTGAACAAAAAC
ATGAGTGGGAGAAAAGGCGAAGCAAGACAACGACGCTTTCACGAGGTTTA
AAGAAAAAGATAAAAGAGCATTTTTCGTAGTTACGCTACTATTTAACTAA
TAATGATACAAGTATAGTAACGTAAATGAACAAAACAATTTACAATAGGC
TCATGGTCTTTAGGTACTGTATTAGCT
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Coding sequence (CDS) from alignment at H-elongata_contig13148:2587..3213-

>mRNA_H-elongata_contig13148.2271.1 ID=mRNA_H-elongata_contig13148.2271.1|Name=mRNA_H-elongata_contig13148.2271.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig13148:2587..3213- (Himanthalia elongata Himel1 dioecious)
ATGTCATCATGTTGGGACGCCAAAACGAAGCATGTAAAGTGGGCTCTAAA
TAGAACATTTAAAAATCATTCAAACCCTCCGATGAAATGTCATCATGTTG
GGACGCCAAAACGAAGCATGTAAAGTGGGCTCTAAATAGAACATTTAAAA
ATCATTCAAACCCTCCGATGAAAGTAGGCGTTAAAGAAAAGGGGGGGAAG
CTATTTTATTTTGGGATATTAAGGAGTTCTAGAGGTGTTAATATCATTAT
GCTACCAAGGTGGCGCGGTGAACAAAAACATGAGTGGGAGAAAAGGCGAA
GCAAGACAACGACGCTTTCACGAGGTTTAAAGAAAAAGATAAAAGAGCAT
TTTTCGTAGAGTAGGCGTTAAAGAAAAGGGGGGGAAGCTATTTTATTTTG
GGATATTAAGGAGTTCTAGAGGTGTTAATATCATTATGCTACCAAGGTGG
CGCGGTGAACAAAAACATGAGTGGGAGAAAAGGCGAAGCAAGACAACGAC
GCTTTCACGAGGTTTAAAGAAAAAGATAAAAGAGCATTTTTCGTAG
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