mRNA_H-elongata_contig13137.2263.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13137.2263.1
Unique NamemRNA_H-elongata_contig13137.2263.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13137.2263.1 vs. uniprot
Match: D7G6T7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.900e-11
Identity = 28/43 (65.12%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:   16 PELPEICSIGFRNIWRCGFDRLSDELYCCDVGQNLIGSIYKVE 144
            P LPEIC+ GFRN WRC FDR +DELYC DVG  L+  I  VE
Sbjct:  305 PALPEICASGFRNPWRCSFDRETDELYCGDVGHTLVEEIDIVE 347
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BLAST of mRNA_H-elongata_contig13137.2263.1 vs. uniprot
Match: D7G957_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G957_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 8.160e-10
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   28 EICSIGFRNIWRCGFDRLSDELYCCDVGQNLIGSIYKVE 144
            E+C+IG RN WRCGFDRL+D+LYC DVG  L+  I  +E
Sbjct:  325 EVCAIGLRNPWRCGFDRLNDDLYCGDVGHTLVEEINFIE 363
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BLAST of mRNA_H-elongata_contig13137.2263.1 vs. uniprot
Match: A0A6H5KT40_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT40_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.110e-9
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   28 EICSIGFRNIWRCGFDRLSDELYCCDVGQNLIGSIYKVE 144
            E+C+IG RN WRCGFDRL+D LYC DVG  L+  I  +E
Sbjct:  249 EVCAIGLRNPWRCGFDRLNDNLYCGDVGHTLVEEINLIE 287
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BLAST of mRNA_H-elongata_contig13137.2263.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 5.320e-9
Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   22 LPEICSIGFRNIWRCGFDRLSDELYCCDVGQNLIGSIYKVE 144
            L EIC+IGFRN WRC FDR +D+LYC DVG   +  I  VE
Sbjct:  307 LDEICAIGFRNPWRCSFDRETDDLYCGDVGHTFVEEIDLVE 347
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BLAST of mRNA_H-elongata_contig13137.2263.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 9.960e-9
Identity = 25/41 (60.98%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:   22 LPEICSIGFRNIWRCGFDRLSDELYCCDVGQNLIGSIYKVE 144
            L EIC+IGFRN WRC FDR +D LYC DVG   +  I  VE
Sbjct:  370 LDEICAIGFRNPWRCSFDRENDNLYCGDVGHTFVEEIDLVE 410
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BLAST of mRNA_H-elongata_contig13137.2263.1 vs. uniprot
Match: A0A7W1FNL7_9BACT (PQQ-dependent sugar dehydrogenase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7W1FNL7_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 1.830e-5
Identity = 20/49 (40.82%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    1 PFCRRPELP-EICSIGFRNIWRCGFDRLSDELYCCDVGQNLIGSIYKVE 144
            PF   P+   E+ + G RN+W+  FDR++ +L+ CDVGQ+L  S+ ++E
Sbjct:  249 PFLTIPKARGEVWAYGLRNVWKMSFDRVTGDLWGCDVGQDLWDSVMRIE 297
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BLAST of mRNA_H-elongata_contig13137.2263.1 vs. uniprot
Match: A0A7C4ZZZ9_9CHLR (Glucose dehydrogenase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C4ZZZ9_9CHLR)

HSP 1 Score: 48.5 bits (114), Expect = 3.410e-5
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:   25 PEICSIGFRNIWRCGFDRLSDELYCCDVGQNLIGSIY 135
            PEI S G+RN WR  FDR++D++Y  DVGQN    I+
Sbjct:  199 PEIWSYGWRNPWRFSFDRVTDDMYIADVGQNQYEEIH 235
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BLAST of mRNA_H-elongata_contig13137.2263.1 vs. uniprot
Match: A0A7V9S436_9BACT (PQQ-dependent sugar dehydrogenase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7V9S436_9BACT)

HSP 1 Score: 47.4 bits (111), Expect = 8.770e-5
Identity = 21/40 (52.50%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:    1 PFCRRPE-LPEICSIGFRNIWRCGFDRLSDELYCCDVGQN 117
            PF   P+ L EI ++G RN WR  FDRLS++ +  DVGQN
Sbjct:  202 PFVASPDTLDEIWALGLRNPWRISFDRLSNDFWIADVGQN 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13137.2263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G6T7_ECTSI4.900e-1165.12WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G957_ECTSI8.160e-1061.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT40_9PHAE1.110e-961.54GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JZF5_9PHAE5.320e-960.98GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G4P3_ECTSI9.960e-960.98Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
A0A7W1FNL7_9BACT1.830e-540.82PQQ-dependent sugar dehydrogenase n=1 Tax=Planctom... [more]
A0A7C4ZZZ9_9CHLR3.410e-554.05Glucose dehydrogenase n=1 Tax=Anaerolineae bacteri... [more]
A0A7V9S436_9BACT8.770e-552.50PQQ-dependent sugar dehydrogenase n=1 Tax=Bacteroi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13137contigH-elongata_contig13137:362..508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue6.2e-09
Seed eggNOG ortholog2880.D7G6T7
KEGG rclassRC00194
KEGG koko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG ReactionR01098
KEGG Pathwayko00052,ko04011,ko04139,map00052,map04011,map04139
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC1.1.3.9,1.2.3.15,3.2.1.59
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929779.9878592-CDS-H-elongata_contig13137:361..5081622929779.9878592-CDS-H-elongata_contig13137:361..508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13137 362..508 +
1691679154.7305007-CDS-H-elongata_contig13137:361..5081691679154.7305007-CDS-H-elongata_contig13137:361..508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13137 362..508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13137.2263.1prot_H-elongata_contig13137.2263.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13137 362..508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13137.2263.1

>prot_H-elongata_contig13137.2263.1 ID=prot_H-elongata_contig13137.2263.1|Name=mRNA_H-elongata_contig13137.2263.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
PFCRRPELPEICSIGFRNIWRCGFDRLSDELYCCDVGQNLIGSIYKVE*
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mRNA from alignment at H-elongata_contig13137:362..508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13137.2263.1 ID=mRNA_H-elongata_contig13137.2263.1|Name=mRNA_H-elongata_contig13137.2263.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig13137:362..508+ (Himanthalia elongata Himel1 dioecious)
CCCTTCTGCCGCCGTCCAGAATTGCCCGAGATATGTTCCATTGGTTTCCG
CAACATATGGAGGTGTGGCTTTGACCGTCTCTCCGATGAACTCTACTGCT
GCGACGTCGGCCAGAATTTGATCGGGAGCATCTACAAAGTCGAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig13137:362..508+

>mRNA_H-elongata_contig13137.2263.1 ID=mRNA_H-elongata_contig13137.2263.1|Name=mRNA_H-elongata_contig13137.2263.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig13137:362..508+ (Himanthalia elongata Himel1 dioecious)
CCCTTCTGCCGCCGTCCAGAATTGCCCGAGATATGTTCCATTGGTTTCCG
CAACATATGGAGGTGTGGCTTTGACCGTCTCTCCGATGAACTCTACTGCT
GCGACGTCGGCCAGAATTTGATCGGGAGCATCTACAAAGTCGAGTAACCC
TTCTGCCGCCGTCCAGAATTGCCCGAGATATGTTCCATTGGTTTCCGCAA
CATATGGAGGTGTGGCTTTGACCGTCTCTCCGATGAACTCTACTGCTGCG
ACGTCGGCCAGAATTTGATCGGGAGCATCTACAAAGTCGAGTAA
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