mRNA_H-elongata_contig131364.2262.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131364.2262.1
Unique NamemRNA_H-elongata_contig131364.2262.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig131364.2262.1 vs. uniprot
Match: D8LJM9_ECTSI (Brix domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJM9_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 2.410e-54
Identity = 85/102 (83.33%), Postives = 91/102 (89.22%), Query Frame = 1 
Query:    1 VPSPLCNNPESYTVKQICQWASNKKFTHLFVISERLKKCNGLIVSVIPSGPTAFFKVSNVVPSEAVFNHGKVTAHQPEIILNNFNTRLGHRVGRFLGSFFPH 306
            +P+      +S+TVKQICQWA NKKFTHLFVISERLK CNGLIVSV+P GPTAFFKVSNV+PS  VFNHGKVTAHQPEIILNNFNTRLGHRVGRFLGSFFPH
Sbjct:  118 IPNAFFYPRKSFTVKQICQWADNKKFTHLFVISERLKICNGLIVSVLPHGPTAFFKVSNVIPSTEVFNHGKVTAHQPEIILNNFNTRLGHRVGRFLGSFFPH 219
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BLAST of mRNA_H-elongata_contig131364.2262.1 vs. uniprot
Match: A0A835YUA9_9STRA (Anticodon-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUA9_9STRA)

HSP 1 Score: 152 bits (384), Expect = 3.670e-43
Identity = 69/93 (74.19%), Postives = 81/93 (87.10%), Query Frame = 1 
Query:   28 ESYTVKQICQWASNKKFTHLFVISERLKKCNGLIVSVIPSGPTAFFKVSNVVPSEAVFNHGKVTAHQPEIILNNFNTRLGHRVGRFLGSFFPH 306
            +S TVKQ+CQW +NKKFTHLFV+SE+ K CNGL+V+V+P+GPTAFFKVSNV  SE + N G V+ HQPE+ILNNFNTRLGHRVGRFLGS FPH
Sbjct:  127 KSATVKQLCQWCNNKKFTHLFVLSEKSKVCNGLLVAVLPAGPTAFFKVSNVKTSEDIHNRGTVSPHQPELILNNFNTRLGHRVGRFLGSVFPH 219
[Close]
BLAST of mRNA_H-elongata_contig131364.2262.1 vs. uniprot
Match: A0A6G0XIW8_9STRA (Brix domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIW8_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.060e-37
Identity = 60/102 (58.82%), Postives = 80/102 (78.43%), Query Frame = 1 
Query:    1 VPSPLCNNPESYTVKQICQWASNKKFTHLFVISERLKKCNGLIVSVIPSGPTAFFKVSNVVPSEAVFNHGKVTAHQPEIILNNFNTRLGHRVGRFLGSFFPH 306
            VP+       +Y +K IC++A NK FTH+ ++SE+ KKCNG+++S +P GPTAFFK+SNVV  + + NH + T+HQPE+ILNNFNTRLGHR+GRFLGSFF H
Sbjct:  157 VPNSFYYKRGTYDIKDICRFAGNKAFTHVGILSEKEKKCNGMVISRLPHGPTAFFKISNVVLMDKIENHARKTSHQPEVILNNFNTRLGHRIGRFLGSFFEH 258
[Close]
BLAST of mRNA_H-elongata_contig131364.2262.1 vs. uniprot
Match: A0A485L3X9_9STRA (Aste57867_15808 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L3X9_9STRA)

HSP 1 Score: 137 bits (344), Expect = 3.340e-37
Identity = 60/102 (58.82%), Postives = 79/102 (77.45%), Query Frame = 1 
Query:    1 VPSPLCNNPESYTVKQICQWASNKKFTHLFVISERLKKCNGLIVSVIPSGPTAFFKVSNVVPSEAVFNHGKVTAHQPEIILNNFNTRLGHRVGRFLGSFFPH 306
            VP+       +Y +K IC++A NK FTH+ ++SE+ K CNG+I+S +P GPTAFFK+SNVV  + + NH + T+HQPE+ILNNFNTRLGHR+GRFLGSFF H
Sbjct:  160 VPNSFYYKRGTYDIKDICRFAGNKAFTHVGILSEKEKACNGMIISRLPHGPTAFFKISNVVLMDKIVNHARKTSHQPEVILNNFNTRLGHRIGRFLGSFFEH 261
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BLAST of mRNA_H-elongata_contig131364.2262.1 vs. uniprot
Match: A0A4D9CX49_9STRA (Brix domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CX49_9STRA)

HSP 1 Score: 136 bits (343), Expect = 3.570e-37
Identity = 62/102 (60.78%), Postives = 77/102 (75.49%), Query Frame = 1 
Query:    1 VPSPLCNNPESYTVKQICQWASNKKFTHLFVISERLKKCNGLIVSVIPSGPTAFFKVSNVVPSEAVFNHGKVTAHQPEIILNNFNTRLGHRVGRFLGSFFPH 306
            +P+      +S+ VK IC+ A    FTH+F++SE+ K CNGL+VS +P GPT FFKVSNV P   + +HG+ TAH PE+ILNNFNTRLGHRVGRFLGSFFPH
Sbjct:  119 IPNAFFYPRKSFEVKAICKHAEESGFTHVFILSEKYKVCNGLLVSHLPCGPTVFFKVSNVTPGAKIAHHGQPTAHVPELILNNFNTRLGHRVGRFLGSFFPH 220
[Close]
BLAST of mRNA_H-elongata_contig131364.2262.1 vs. uniprot
Match: W4GD54_9STRA (Brix domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GD54_9STRA)

HSP 1 Score: 137 bits (344), Expect = 5.200e-37
Identity = 59/102 (57.84%), Postives = 80/102 (78.43%), Query Frame = 1 
Query:    1 VPSPLCNNPESYTVKQICQWASNKKFTHLFVISERLKKCNGLIVSVIPSGPTAFFKVSNVVPSEAVFNHGKVTAHQPEIILNNFNTRLGHRVGRFLGSFFPH 306
            VP+       +Y +K IC++A NK+FTH+ ++SE+ K CNGL++S +P GPTA+FK+SNVV  + + NH + T+HQPE+ILNNFNTRLGHR+GRFLGSFF H
Sbjct:  182 VPNSFYYKRGTYDIKDICKFAGNKEFTHVGILSEKEKTCNGLVISRLPHGPTAYFKISNVVLMDKIVNHARKTSHQPEVILNNFNTRLGHRIGRFLGSFFEH 283
[Close]
BLAST of mRNA_H-elongata_contig131364.2262.1 vs. uniprot
Match: A0A1V9ZXE8_9STRA (Ribosome production factor 1 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXE8_9STRA)

HSP 1 Score: 134 bits (337), Expect = 2.300e-36
Identity = 58/102 (56.86%), Postives = 82/102 (80.39%), Query Frame = 1 
Query:    1 VPSPLCNNPESYTVKQICQWASNKKFTHLFVISERLKKCNGLIVSVIPSGPTAFFKVSNVVPSEAVFNHGKVTAHQPEIILNNFNTRLGHRVGRFLGSFFPH 306
            +P+      ++Y +K IC++ASNK+F+H+ ++SE+ KK NG+I+S +P GPTA+FK+SNVV ++ + NH K T HQPE+ILNNFNTRLGHR+GRFLGSF+ H
Sbjct:  150 IPNSFYYERKTYDIKDICRFASNKEFSHVCILSEKEKKVNGMIISRLPHGPTAYFKISNVVLNDKIQNHAKRTNHQPELILNNFNTRLGHRIGRFLGSFYEH 251
[Close]
BLAST of mRNA_H-elongata_contig131364.2262.1 vs. uniprot
Match: A0A024U7E5_9STRA (Brix domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U7E5_9STRA)

HSP 1 Score: 134 bits (337), Expect = 3.500e-36
Identity = 60/102 (58.82%), Postives = 79/102 (77.45%), Query Frame = 1 
Query:    1 VPSPLCNNPESYTVKQICQWASNKKFTHLFVISERLKKCNGLIVSVIPSGPTAFFKVSNVVPSEAVFNHGKVTAHQPEIILNNFNTRLGHRVGRFLGSFFPH 306
            VP+       +Y +K IC++A NK+FTH+ ++SE+ K  NGL++S +P GPTAFFKVSNVV  + + NH + T+HQPE+ILNNFNTRLGHR+GRFLGSFF H
Sbjct:  158 VPNSFYYKRGTYDIKDICKFAGNKEFTHVGILSEKEKVVNGLVISRLPHGPTAFFKVSNVVLMDKIVNHARKTSHQPEVILNNFNTRLGHRIGRFLGSFFEH 259
[Close]
BLAST of mRNA_H-elongata_contig131364.2262.1 vs. uniprot
Match: A0A067C2S8_SAPPC (Brix domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C2S8_SAPPC)

HSP 1 Score: 133 bits (334), Expect = 9.570e-36
Identity = 59/102 (57.84%), Postives = 80/102 (78.43%), Query Frame = 1 
Query:    1 VPSPLCNNPESYTVKQICQWASNKKFTHLFVISERLKKCNGLIVSVIPSGPTAFFKVSNVVPSEAVFNHGKVTAHQPEIILNNFNTRLGHRVGRFLGSFFPH 306
            +P+    + ++Y +K IC++A NK FTH+ ++SE+ KK NG++VS +P GPTAFFK+SNVV +  + N  K T+HQPE+ILNNFNTRLGHR+GRFLGSFF H
Sbjct:  157 IPNSFYYDRKTYDIKDICRFAGNKAFTHVCILSEKEKKVNGMVVSRLPHGPTAFFKISNVVLNNKIQNKAKRTSHQPELILNNFNTRLGHRIGRFLGSFFEH 258
[Close]
BLAST of mRNA_H-elongata_contig131364.2262.1 vs. uniprot
Match: K3XB40_GLOUD (Brix domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XB40_GLOUD)

HSP 1 Score: 130 bits (327), Expect = 9.070e-35
Identity = 60/102 (58.82%), Postives = 80/102 (78.43%), Query Frame = 1 
Query:    1 VPSPLCNNPESYTVKQICQWASNKKFTHLFVISERLKKCNGLIVSVIPSGPTAFFKVSNVVPSEAVFNHGKVTAHQPEIILNNFNTRLGHRVGRFLGSFFPH 306
            +P+       ++ +K+I Q+A+NK+FTHL V+SE+ K CNG++VS +P GPTAFFKV+NV  +E + +HGK T HQPE+ILNNF+TRLGHRVGRFLGS F H
Sbjct:  150 IPNSFYYKRGTFDIKEIVQFATNKEFTHLIVLSEKSKVCNGMLVSRLPEGPTAFFKVTNVKLNEDIKDHGKRTNHQPELILNNFSTRLGHRVGRFLGSLFRH 251
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131364.2262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJM9_ECTSI2.410e-5483.33Brix domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YUA9_9STRA3.670e-4374.19Anticodon-binding protein n=1 Tax=Tribonema minus ... [more]
A0A6G0XIW8_9STRA2.060e-3758.82Brix domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A485L3X9_9STRA3.340e-3758.82Aste57867_15808 protein n=1 Tax=Aphanomyces stella... [more]
A0A4D9CX49_9STRA3.570e-3760.78Brix domain-containing protein n=2 Tax=Monodopsida... [more]
W4GD54_9STRA5.200e-3757.84Brix domain-containing protein n=7 Tax=Aphanomyces... [more]
A0A1V9ZXE8_9STRA2.300e-3656.86Ribosome production factor 1 (Fragment) n=1 Tax=Th... [more]
A0A024U7E5_9STRA3.500e-3658.82Brix domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A067C2S8_SAPPC9.570e-3657.84Brix domain-containing protein n=4 Tax=Saprolegnia... [more]
K3XB40_GLOUD9.070e-3558.82Brix domain-containing protein n=1 Tax=Globisporan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131364contigH-elongata_contig131364:984..1753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.9
Seed ortholog evalue6.1e-43
Seed eggNOG ortholog2880.D8LJM9
Preferred nameRPF1
KEGG koko:K14846
GOsGO:0000027,GO:0000054,GO:0000055,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030687,GO:0031503,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033750,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034660,GO:0042134,GO:0042254,GO:0042255,GO:0042273,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0065003,GO:0070013,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.rRNA primary transcript binding
EggNOG OGsCOG2136@1,KOG2780@2759
COG Functional cat.AJ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929779.943837-CDS-H-elongata_contig131364:983..11671622929779.943837-CDS-H-elongata_contig131364:983..1167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131364 984..1167 -
1691679154.709708-CDS-H-elongata_contig131364:983..11671691679154.709708-CDS-H-elongata_contig131364:983..1167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131364 984..1167 -
1622929779.9568045-CDS-H-elongata_contig131364:1631..17531622929779.9568045-CDS-H-elongata_contig131364:1631..1753Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131364 1632..1753 -
1691679154.7218459-CDS-H-elongata_contig131364:1631..17531691679154.7218459-CDS-H-elongata_contig131364:1631..1753Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131364 1632..1753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131364.2262.1prot_H-elongata_contig131364.2262.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131364 984..1753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131364.2262.1

>prot_H-elongata_contig131364.2262.1 ID=prot_H-elongata_contig131364.2262.1|Name=mRNA_H-elongata_contig131364.2262.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
VPSPLCNNPESYTVKQICQWASNKKFTHLFVISERLKKCNGLIVSVIPSG
PTAFFKVSNVVPSEAVFNHGKVTAHQPEIILNNFNTRLGHRVGRFLGSFF
PH
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mRNA from alignment at H-elongata_contig131364:984..1753-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131364.2262.1 ID=mRNA_H-elongata_contig131364.2262.1|Name=mRNA_H-elongata_contig131364.2262.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=770bp|location=Sequence derived from alignment at H-elongata_contig131364:984..1753- (Himanthalia elongata Himel1 dioecious)
GTCCCCTCTCCCCTGTGCAATAATCCAGAATCGTATACGGTGAAGCAAAT
TTGTCAATGGGCTTCCAACAAGAAATTCACGCACCTTTTTGTCATTTCGG
AGCGACTGAAAAAATGTAACGGGTAAGAGACACGCGGCTGCTGCTGAGTA
GCCCAGCCGACCACAGGGGAATTTGGATTTTGTGTACAGTATAGACTATT
ATAATGCTGAAACCGTTAGGACTGAGTGCGATATTAAGTGGCACTACGGT
TGCTCTCTTCTTTGCCGCTGTCTGGCCCGGTGTGGATATTATTATTATAT
ATAATATACTATATATAAAAATGTACGAAATATGATGTATGGATGTACGC
GGAATATCTATTTTTTGAAGGGACATCTGGGGCTCCTCTATTTAGTGAAC
GTAACACGTAAATAGAGCCTATCGATATTATTAGTGTAAAAACGAACGAG
AGAGTTTCAATAAAATCACGACTGTCTGGAGTTTTTTCACCTGTGACTCA
TTTTTCACTGCTGTGACCCCCCTCTCTTGCCCCCGTCCCCGTTCCCCATT
CAATTGACTTGGGCTGCCCACGCTTCCTGTAAAAAGTTTGATTGTGTCGG
TCATACCGAGCGGGCCTACCGCGTTCTTTAAGGTTTCTAACGTGGTGCCC
AGCGAGGCGGTGTTCAACCACGGGAAGGTGACGGCCCACCAGCCCGAGAT
CATCCTCAATAACTTTAACACGCGGCTAGGGCACAGGGTGGGGCGCTTCC
TCGGGTCGTTCTTCCCTCAC
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Coding sequence (CDS) from alignment at H-elongata_contig131364:984..1753-

>mRNA_H-elongata_contig131364.2262.1 ID=mRNA_H-elongata_contig131364.2262.1|Name=mRNA_H-elongata_contig131364.2262.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig131364:984..1753- (Himanthalia elongata Himel1 dioecious)
GTCCCCTCTCCCCTGTGCAATAATCCAGAATCGTATACGGTGAAGCAAAT
TTGTCAATGGGCTTCCAACAAGAAATTCACGCACCTTTTTGTCATTTCGG
AGCGACTGAAAAAATGTAACGGGTCCCCTCTCCCCTGTGCAATAATCCAG
AATCGTATACGGTGAAGCAAATTTGTCAATGGGCTTCCAACAAGAAATTC
ACGCACCTTTTTGTCATTTCGGAGCGACTGAAAAAATGTAACGGTTTGAT
TGTGTCGGTCATACCGAGCGGGCCTACCGCGTTCTTTAAGGTTTCTAACG
TGGTGCCCAGCGAGGCGGTGTTCAACCACGGGAAGGTGACGGCCCACCAG
CCCGAGATCATCCTCAATAACTTTAACACGCGGCTAGGGCACAGGGTGGG
GCGCTTCCTCGGGTCGTTCTTCCCTCACTTTGATTGTGTCGGTCATACCG
AGCGGGCCTACCGCGTTCTTTAAGGTTTCTAACGTGGTGCCCAGCGAGGC
GGTGTTCAACCACGGGAAGGTGACGGCCCACCAGCCCGAGATCATCCTCA
ATAACTTTAACACGCGGCTAGGGCACAGGGTGGGGCGCTTCCTCGGGTCG
TTCTTCCCTCAC
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