mRNA_H-elongata_contig131347.2261.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131347.2261.1
Unique NamemRNA_H-elongata_contig131347.2261.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig131347.2261.1 vs. uniprot
Match: A0A6H5L9C8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9C8_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 3.010e-14
Identity = 34/81 (41.98%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:    1 NNVWVADSGASCHMTDDGTGLYNLRPPPPGRETVMIGERRSLRVECVGNIDVIFHGHRNVRITLIDVSLVPGLGFNLYSLN 243
            + V++ D+GA  H+   G  +YN RPP P    +M+G+ + + VE  G++DVIFH   +VR+TL +V +VPGL  ++ SLN
Sbjct:   56 STVFLEDTGAVVHVVPSGEKVYNRRPPLPEERLLMLGDGKHIPVEFFGDLDVIFHCPEDVRVTLQNVGVVPGLALDILSLN 136
[Close]
BLAST of mRNA_H-elongata_contig131347.2261.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.220e-14
Identity = 34/81 (41.98%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:    1 NNVWVADSGASCHMTDDGTGLYNLRPPPPGRETVMIGERRSLRVECVGNIDVIFHGHRNVRITLIDVSLVPGLGFNLYSLN 243
            + V++ D+GA  H+   G  +YN RPP P    +M+G+ + + VE  G++DVIFH   +VR+TL +V +VPGL  ++ SLN
Sbjct:  668 STVFLGDTGAVVHVVPSGEKVYNRRPPLPEERLLMLGDGKHIPVEFFGDLDVIFHCSEDVRVTLQNVGVVPGLALDILSLN 748
[Close]
BLAST of mRNA_H-elongata_contig131347.2261.1 vs. uniprot
Match: A0A6H5JN41_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN41_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 4.360e-14
Identity = 34/81 (41.98%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:    1 NNVWVADSGASCHMTDDGTGLYNLRPPPPGRETVMIGERRSLRVECVGNIDVIFHGHRNVRITLIDVSLVPGLGFNLYSLN 243
            + V++ D+GA  H+   G  +YN RPP P    +M+G+ + + VE  G++DVIFH   +VR+TL +V +VPGL  ++ SLN
Sbjct:  668 STVFLGDTGAVVHVVPSGEKVYNRRPPLPEERLLMLGDGKHIPVEFFGDLDVIFHCPEDVRVTLQNVGVVPGLALDILSLN 748
[Close]
BLAST of mRNA_H-elongata_contig131347.2261.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 4.400e-14
Identity = 34/81 (41.98%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:    1 NNVWVADSGASCHMTDDGTGLYNLRPPPPGRETVMIGERRSLRVECVGNIDVIFHGHRNVRITLIDVSLVPGLGFNLYSLN 243
            + V++ D+GA  H+   G  +YN RPP P    +M+G+ + + VE  G++DVIFH   +VR+TL +V +VPGL  ++ SLN
Sbjct:  538 STVFLGDTGAVVHVVPSGEKVYNRRPPLPEERLLMLGDGKHIPVEFFGDLDVIFHCPEDVRVTLQNVGVVPGLALDILSLN 618
[Close]
BLAST of mRNA_H-elongata_contig131347.2261.1 vs. uniprot
Match: A0A6H5JBS7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS7_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 5.870e-14
Identity = 34/81 (41.98%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:    1 NNVWVADSGASCHMTDDGTGLYNLRPPPPGRETVMIGERRSLRVECVGNIDVIFHGHRNVRITLIDVSLVPGLGFNLYSLN 243
            + V++ D+GA  H+   G  +YN RPP P    +M+G+ + + VE  G++DVIFH   +VR+TL +V +VPGL  ++ SLN
Sbjct:  596 STVFLGDTGAVVHVVASGEKVYNRRPPLPEERLLMLGDGKHIPVEFFGDLDVIFHCPEDVRVTLQNVGVVPGLALDILSLN 676
[Close]
BLAST of mRNA_H-elongata_contig131347.2261.1 vs. uniprot
Match: A0A6H5L646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L646_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.510e-13
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:    1 NNVWVADSGASCHMTDDGTGLYNLRPPPPGRETVMIGERRSLRVECVGNIDVIFHGHRNVRITLIDVSLVPGLGFNLYSLN 243
            + V++ D+GA  H+   G  +YN RPP P    +M+G+ + + VE  G++DVIFH   +VR+TL +V + PGL  ++ SLN
Sbjct:  813 STVFLGDTGAVVHVVPSGEKVYNRRPPLPEERLLMLGDGKHIPVEFFGDLDVIFHCPEDVRVTLQNVGVAPGLALDIVSLN 893
[Close]
BLAST of mRNA_H-elongata_contig131347.2261.1 vs. uniprot
Match: A0A6H5JXN1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 5.230e-13
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:    1 NNVWVADSGASCHMTDDGTGLYNLRPPPPGRETVMIGERRSLRVECVGNIDVIFHGHRNVRITLIDVSLVPGLGFNLYSLN 243
            + V++ D+GA  H+   G  +YN RPP P    +M+G+ + + VE  G++DVI H   +VR+TL +V +VPGL  ++ SLN
Sbjct:  451 STVFLGDTGAVVHVVPSGEKVYNRRPPLPEERLLMLGDGKHIPVEFFGDLDVICHCPEDVRVTLQNVGVVPGLALDILSLN 531
[Close]
BLAST of mRNA_H-elongata_contig131347.2261.1 vs. uniprot
Match: A0A6H5JN93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN93_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.510e-12
Identity = 32/81 (39.51%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:    1 NNVWVADSGASCHMTDDGTGLYNLRPPPPGRETVMIGERRSLRVECVGNIDVIFHGHRNVRITLIDVSLVPGLGFNLYSLN 243
            + V++ D+GA  H+   G  +YN RPP P    +M+G+   +  +  G++DVIFH   +VR+TL +V +VPGL  ++ SLN
Sbjct:  282 STVFLGDTGAVVHVVPSGEKVYNRRPPLPEERLLMLGDGTHIPGDFFGDLDVIFHCPEDVRVTLQNVGVVPGLALDILSLN 362
[Close]
BLAST of mRNA_H-elongata_contig131347.2261.1 vs. uniprot
Match: A0A6H5JFE5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE5_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 5.660e-11
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:   37 HMTDDGTGLYNLRPPPPGRETVMIGERRSLRVECVGNIDVIFHGHRNVRITLIDVSLVPGLGFNLYSLN 243
            H+   G  +YN RPP P    +M+G+ + + VE  G++DVIFH   +VR+TL +V +VPGL  ++ SLN
Sbjct:  451 HVVPSGEKVYNRRPPLPEERLLMLGDGKHIPVEFFGDLDVIFHCPEDVRVTLQNVGVVPGLALDILSLN 519
[Close]
BLAST of mRNA_H-elongata_contig131347.2261.1 vs. uniprot
Match: A0A6H5KYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB5_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.150e-8
Identity = 30/81 (37.04%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:    1 NNVWVADSGASCHMTDDGTGLYNLRPPPPGRETVMIGERRSLRVECVGNIDVIFHGHRNVRITLIDVSLVPGLGFNLYSLN 243
            + V++ D+GA  H+   G     +R P P    +M+G+ + + VE  G++DVIFH   +VR+TL +V +VPGL  ++  LN
Sbjct:  710 STVFLGDTGAVVHVVPSGE---KVRLPLPEERLLMLGDGKHIPVEFFGDLDVIFHCPEDVRVTLQNVGVVPGLALDILPLN 787
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131347.2261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5L9C8_9PHAE3.010e-1441.98Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JVD9_9PHAE3.220e-1441.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN41_9PHAE4.360e-1441.98Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAC2_9PHAE4.400e-1441.98Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JBS7_9PHAE5.870e-1441.98CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5L646_9PHAE1.510e-1340.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN1_9PHAE5.230e-1340.74Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JN93_9PHAE2.510e-1239.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFE5_9PHAE5.660e-1143.48Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KYB5_9PHAE1.150e-837.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131347contigH-elongata_contig131347:1413..1658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score61.2
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog5270.UM03188P0
EggNOG free text desc.Retrotransposon gag protein
EggNOG OGs38DPC@33154,3NUZ7@4751,3V2N5@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929779.9014287-CDS-H-elongata_contig131347:1412..16581622929779.9014287-CDS-H-elongata_contig131347:1412..1658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131347 1413..1658 +
1691679154.69315-CDS-H-elongata_contig131347:1412..16581691679154.69315-CDS-H-elongata_contig131347:1412..1658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131347 1413..1658 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131347.2261.1prot_H-elongata_contig131347.2261.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131347 1413..1658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131347.2261.1

>prot_H-elongata_contig131347.2261.1 ID=prot_H-elongata_contig131347.2261.1|Name=mRNA_H-elongata_contig131347.2261.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
NNVWVADSGASCHMTDDGTGLYNLRPPPPGRETVMIGERRSLRVECVGNI
DVIFHGHRNVRITLIDVSLVPGLGFNLYSLNA
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mRNA from alignment at H-elongata_contig131347:1413..1658+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131347.2261.1 ID=mRNA_H-elongata_contig131347.2261.1|Name=mRNA_H-elongata_contig131347.2261.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at H-elongata_contig131347:1413..1658+ (Himanthalia elongata Himel1 dioecious)
AACAATGTATGGGTTGCCGATAGCGGGGCATCGTGCCATATGACCGATGA
TGGGACTGGTTTGTACAATTTGAGGCCTCCTCCGCCTGGTCGTGAAACAG
TAATGATAGGCGAACGACGCAGCCTAAGGGTTGAATGTGTCGGAAACATA
GATGTAATTTTTCATGGTCACAGGAATGTCAGGATAACATTAATAGATGT
ATCGTTAGTTCCTGGTCTAGGGTTTAACCTGTACTCGTTGAATGCT
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Coding sequence (CDS) from alignment at H-elongata_contig131347:1413..1658+

>mRNA_H-elongata_contig131347.2261.1 ID=mRNA_H-elongata_contig131347.2261.1|Name=mRNA_H-elongata_contig131347.2261.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig131347:1413..1658+ (Himanthalia elongata Himel1 dioecious)
AACAATGTATGGGTTGCCGATAGCGGGGCATCGTGCCATATGACCGATGA
TGGGACTGGTTTGTACAATTTGAGGCCTCCTCCGCCTGGTCGTGAAACAG
TAATGATAGGCGAACGACGCAGCCTAAGGGTTGAATGTGTCGGAAACATA
GATGTAATTTTTCATGGTCACAGGAATGTCAGGATAACATTAATAGATGT
ATCGTTAGTTCCTGGTCTAGGGTTTAACCTGTACTCGTTGAATGCTAACA
ATGTATGGGTTGCCGATAGCGGGGCATCGTGCCATATGACCGATGATGGG
ACTGGTTTGTACAATTTGAGGCCTCCTCCGCCTGGTCGTGAAACAGTAAT
GATAGGCGAACGACGCAGCCTAAGGGTTGAATGTGTCGGAAACATAGATG
TAATTTTTCATGGTCACAGGAATGTCAGGATAACATTAATAGATGTATCG
TTAGTTCCTGGTCTAGGGTTTAACCTGTACTCGTTGAATGCT
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