mRNA_H-elongata_contig131287.2259.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131287.2259.1
Unique NamemRNA_H-elongata_contig131287.2259.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig131287.2259.1 vs. uniprot
Match: D7FYL3_ECTSI (MutS protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL3_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 3.140e-22
Identity = 57/85 (67.06%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:   22 RSEQWMLSIYEEAASSTNAPRGEPISNPLALADAGEMGGTAGK----VRIGLIAVDVRTGKVVHDAFVESSGQRQELDTRLRHLR 264
            RSEQW++S+YEE AS   +  GEP+S  +AL D G  GG A K    VR+GLIAVDVRTGKVVHDAF E SGQRQEL TRLRHLR
Sbjct:  567 RSEQWLMSMYEEDASPGASTEGEPLSISIALNDGG--GGGAEKQVERVRVGLIAVDVRTGKVVHDAFEEGSGQRQELHTRLRHLR 649
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131287.2259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYL3_ECTSI3.140e-2267.06MutS protein homolog 3 n=1 Tax=Ectocarpus siliculo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131287contigH-elongata_contig131287:808..1532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue1.5e-18
Seed eggNOG ortholog2880.D7FYL3
KEGG koko:K08736
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
EggNOG free text desc.Component of the post-replicative DNA mismatch repair system (MMR)
EggNOG OGsCOG0249@1,KOG0218@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size266
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929779.806417-CDS-H-elongata_contig131287:807..8301622929779.806417-CDS-H-elongata_contig131287:807..830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131287 808..830 +
1691679154.6460018-CDS-H-elongata_contig131287:807..8301691679154.6460018-CDS-H-elongata_contig131287:807..830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131287 808..830 +
1622929779.8208678-CDS-H-elongata_contig131287:1291..15321622929779.8208678-CDS-H-elongata_contig131287:1291..1532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131287 1292..1532 +
1691679154.6581564-CDS-H-elongata_contig131287:1291..15321691679154.6581564-CDS-H-elongata_contig131287:1291..1532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131287 1292..1532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131287.2259.1prot_H-elongata_contig131287.2259.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131287 808..1532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131287.2259.1

>prot_H-elongata_contig131287.2259.1 ID=prot_H-elongata_contig131287.2259.1|Name=mRNA_H-elongata_contig131287.2259.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
SNGCSLFRSEQWMLSIYEEAASSTNAPRGEPISNPLALADAGEMGGTAGK
VRIGLIAVDVRTGKVVHDAFVESSGQRQELDTRLRHLR
back to top

mRNA from alignment at H-elongata_contig131287:808..1532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131287.2259.1 ID=mRNA_H-elongata_contig131287.2259.1|Name=mRNA_H-elongata_contig131287.2259.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=725bp|location=Sequence derived from alignment at H-elongata_contig131287:808..1532+ (Himanthalia elongata Himel1 dioecious)
AGTAACGGGTGCAGCCTATTCAGGTAACTCGATGGACCAATTATGGTACG
TCTCTCTTTCCCCACACCCACTAATGGTAGAGTGGACATGTGCGATATAG
TACATTCACAGACAGTTTTGTGTGCCTTCACCCAACACTCCGGGACGTCA
TATTTTGTAATGTGGCCACAAATCGTCCACGGGGAGTCTTCACCATCACC
AATCCCCGGGGTGTCATTACCATTACCGTGCAAATCTCAAAAACGCCTCG
CATTCCGACGGATGCGTTCTCTCTCTCTCTCCTTGGCGCTTTAGTATCTT
GCTTGTTTACATCTTACGCCTTATGTACGAGGCGGGAGAAGAACTCGTGT
CGCGATACTCTACTTATTTCCCCCGTTCCCTCTCTCTTTCCTTGCGTCGT
TTCCACCACGACGCAAGCACACCCCTGGCTCACATTGCATGCCCCTCTCT
GTTTTTCACCACGGTTACGCGCGAAATGCGACAGGTCGGAGCAGTGGATG
CTATCAATCTACGAAGAAGCAGCATCGTCAACCAACGCTCCGCGCGGTGA
GCCGATTTCTAACCCCCTCGCTCTGGCCGACGCAGGAGAGATGGGTGGTA
CGGCTGGGAAGGTTCGGATCGGTCTGATCGCCGTCGACGTCCGGACGGGA
AAAGTGGTTCACGACGCCTTCGTTGAGTCTTCGGGACAGCGCCAGGAACT
CGACACCCGGCTGAGGCACCTCAGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig131287:808..1532+

>mRNA_H-elongata_contig131287.2259.1 ID=mRNA_H-elongata_contig131287.2259.1|Name=mRNA_H-elongata_contig131287.2259.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig131287:808..1532+ (Himanthalia elongata Himel1 dioecious)
AGTAACGGGTGCAGCCTATTCAGAGTAACGGGTGCAGCCTATTCAGGTCG
GAGCAGTGGATGCTATCAATCTACGAAGAAGCAGCATCGTCAACCAACGC
TCCGCGCGGTGAGCCGATTTCTAACCCCCTCGCTCTGGCCGACGCAGGAG
AGATGGGTGGTACGGCTGGGAAGGTTCGGATCGGTCTGATCGCCGTCGAC
GTCCGGACGGGAAAAGTGGTTCACGACGCCTTCGTTGAGTCTTCGGGACA
GCGCCAGGAACTCGACACCCGGCTGAGGCACCTCAGGGTCGGAGCAGTGG
ATGCTATCAATCTACGAAGAAGCAGCATCGTCAACCAACGCTCCGCGCGG
TGAGCCGATTTCTAACCCCCTCGCTCTGGCCGACGCAGGAGAGATGGGTG
GTACGGCTGGGAAGGTTCGGATCGGTCTGATCGCCGTCGACGTCCGGACG
GGAAAAGTGGTTCACGACGCCTTCGTTGAGTCTTCGGGACAGCGCCAGGA
ACTCGACACCCGGCTGAGGCACCTCAGG
back to top