mRNA_H-elongata_contig13123.2257.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13123.2257.1
Unique NamemRNA_H-elongata_contig13123.2257.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13123.2257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13123contigH-elongata_contig13123:7296..8090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size268
Cds size255
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13123.2257.1prot_H-elongata_contig13123.2257.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13123 7309..8090 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929779.680849-UTR-H-elongata_contig13123:7295..73081622929779.680849-UTR-H-elongata_contig13123:7295..7308Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13123 7296..7308 +
1691679154.602816-UTR-H-elongata_contig13123:7295..73081691679154.602816-UTR-H-elongata_contig13123:7295..7308Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13123 7296..7308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929779.692218-CDS-H-elongata_contig13123:7308..74281622929779.692218-CDS-H-elongata_contig13123:7308..7428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13123 7309..7428 +
1691679154.6098912-CDS-H-elongata_contig13123:7308..74281691679154.6098912-CDS-H-elongata_contig13123:7308..7428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13123 7309..7428 +
1622929779.7049499-CDS-H-elongata_contig13123:7955..80901622929779.7049499-CDS-H-elongata_contig13123:7955..8090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13123 7956..8090 +
1691679154.6172993-CDS-H-elongata_contig13123:7955..80901691679154.6172993-CDS-H-elongata_contig13123:7955..8090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13123 7956..8090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13123.2257.1

>prot_H-elongata_contig13123.2257.1 ID=prot_H-elongata_contig13123.2257.1|Name=mRNA_H-elongata_contig13123.2257.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
MMPPIAKNPPLVSLGRPYSDVWAEENFISSLEDDEAEGPMENSATSAAAA
AAAAAAAVVANGAPIGADGERRSLRACGRRSNVFG
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mRNA from alignment at H-elongata_contig13123:7296..8090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13123.2257.1 ID=mRNA_H-elongata_contig13123.2257.1|Name=mRNA_H-elongata_contig13123.2257.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=795bp|location=Sequence derived from alignment at H-elongata_contig13123:7296..8090+ (Himanthalia elongata Himel1 dioecious)
AGCCTTGTCGGAGATGATGCCTCCCATCGCGAAAAACCCTCCGCTGGTGT
CTCTCGGGAGGCCTTACTCGGACGTCTGGGCGGAAGAAAACTTTATCAGT
AGTCTGGAGGACGACGAGGCGGAAGGGCCGATGGTGGGTTTTGAGGAGAG
GGGGTAGAGGAGGAGGAGGAGGCAGTATGATCGCGGTATGTTATGTCCTT
GGCGTCTACTCTTGGTTAGAGGTTCTACGACGGTAGCCGAGGTCGAGGCT
TTCTCTTTCGGACAGGGGTGGGCTTAAGTGAGCGAGTTGGATTTTGTTTT
TCCCGTTTCAGGCTTTCACGGTCGATTGCGCCTTTAAGAGTGCGCCTTTA
GAGTCGTAGCACATGGAGGAGACCCCTCGTTCGTCCGCTGTAGGTAATGT
GAAAGGTTTTCGTGTTGCGGAAAAGTCATCGCTTTCTTTTCCTGCAATCA
ACTACGACTTTAACCGGCCCCTCGAACAACCAAGAACGAAATGCAGGTCC
ATTGCAAGGTTTGAACACCCCTTGGAGGCGTATTTTTCGAGCCGCCCGAC
CCGACCTGAGCGGACCCCGAGAACCCACGGCCTGACCCCCTATTATCTCC
CCTGTAATAGTTAAAAATATGTCTATGTAAATATATGCGCCTCTTATTCT
TCACGAACAGGAAAATTCCGCCACGAGCGCTGCCGCTGCCGCCGCTGCTG
CTGCTGCTGCTGTGGTCGCGAATGGTGCACCGATTGGCGCCGATGGAGAG
AGGCGCAGCCTCCGTGCGTGTGGCCGTAGGAGCAACGTGTTTGGC
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Coding sequence (CDS) from alignment at H-elongata_contig13123:7296..8090+

>mRNA_H-elongata_contig13123.2257.1 ID=mRNA_H-elongata_contig13123.2257.1|Name=mRNA_H-elongata_contig13123.2257.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig13123:7296..8090+ (Himanthalia elongata Himel1 dioecious)
ATGATGCCTCCCATCGCGAAAAACCCTCCGCTGGTGTCTCTCGGGAGGCC
TTACTCGGACGTCTGGGCGGAAGAAAACTTTATCAGTAGTCTGGAGGACG
ACGAGGCGGAAGGGCCGATGATGATGCCTCCCATCGCGAAAAACCCTCCG
CTGGTGTCTCTCGGGAGGCCTTACTCGGACGTCTGGGCGGAAGAAAACTT
TATCAGTAGTCTGGAGGACGACGAGGCGGAAGGGCCGATGGAAAATTCCG
CCACGAGCGCTGCCGCTGCCGCCGCTGCTGCTGCTGCTGCTGTGGTCGCG
AATGGTGCACCGATTGGCGCCGATGGAGAGAGGCGCAGCCTCCGTGCGTG
TGGCCGTAGGAGCAACGTGTTTGGCGAAAATTCCGCCACGAGCGCTGCCG
CTGCCGCCGCTGCTGCTGCTGCTGCTGTGGTCGCGAATGGTGCACCGATT
GGCGCCGATGGAGAGAGGCGCAGCCTCCGTGCGTGTGGCCGTAGGAGCAA
CGTGTTTGGC
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