mRNA_H-elongata_contig13121.2256.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13121.2256.1
Unique NamemRNA_H-elongata_contig13121.2256.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13121.2256.1 vs. uniprot
Match: A0A6H5KVP8_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP8_9PHAE)

HSP 1 Score: 391 bits (1005), Expect = 2.790e-123
Identity = 222/353 (62.89%), Postives = 255/353 (72.24%), Query Frame = 2
Query:  851 MFHVPGTCTFELQPRT*VDAVLDAPTDGLGPDK*SAQPKKTQGAERRT*YTNKRETAAVVAELRELEFDHAERIWRVHGMSCPQYLAMKTGIPVSNIFKWQSPHYEVKLIAAATDDLRRDL-KVGRERRWFGQVDNKLHVKLLERRKTKLRGSTAWIRVNGKKLVMETYPEDLRLRDFMVSNRWCRKFAKRHHLSKRRRAHMKNKYKSVKDHLFQMNSFHRKLRQLLQEPAVSGAAAEGAAESDRAGVFPVNNLCYGRFSLNVVRINVDQVGLALVNGMESTWDEKEATRVQFFQPFPVLEKRQCTVNAYIGAGDKFMMQG--FGGEG-------AAYDPGVDVFFQENAWMD 1879
            M+HV G+C+FELQPRT  D   D P DGL  ++   + KKT+GAE+RT Y+NK++ AAVVAELRELE D AE+IW VHG+SC Q+LA KTGI   NI KW       KLIAAA +DL+ DL K GRERRWFG  + KLH  LL+RR  KLR STAWIRVN +KLV+E YP+D R ++F  S+RWCRKFAKRHHLSKRRR +MKNK  SV+D L QM SF R+LRQLLQE  V  AAA GAAE++ A + PV +  YG FSLN    NVDQVGLA VNG +STWDE  A RVQ  QPFP LEKRQCTVN  IGAGDK M     F G+G       AAYDPGVDV FQENAWMD
Sbjct:    1 MYHVRGSCSFELQPRTQGDGTSDLPDDGLLSNEERTKRKKTRGAEKRTQYSNKKK-AAVVAELRELEADDAEKIWHVHGVSCQQFLARKTGISQPNICKWNGD--AEKLIAAAANDLKNDLFKTGRERRWFGDAEKKLHSLLLQRRTRKLRVSTAWIRVNARKLVVEMYPDDPRAKNFSASDRWCRKFAKRHHLSKRRRTNMKNK--SVEDRLPQMRSFRRRLRQLLQELPVRRAAAGGAAENNGAAIVPVESPLYGGFSLNA-HFNVDQVGLAFVNGPDSTWDETGALRVQIGQPFPGLEKRQCTVNCCIGAGDKLMRTAVIFRGKGKVSAVEKAAYDPGVDVLFQENAWMD 347          
BLAST of mRNA_H-elongata_contig13121.2256.1 vs. uniprot
Match: A0A6H5JZQ9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ9_9PHAE)

HSP 1 Score: 379 bits (972), Expect = 5.380e-114
Identity = 242/477 (50.73%), Postives = 285/477 (59.75%), Query Frame = 2
Query:  638 PRTFAAEQGRALYCSVMHPAPLRHLGQGLRCALVAGGTIITPP*QG*SGKCFVVRFHRTRGIGHRTTGGTTMFHVPGTCTFELQPRT*VDAVLDAPTDGLGPDK*SAQPKKTQGAERRT*YTNKRETAAVVAELRELEFDHAERIWRVHGMSCPQYLAMKTGIPVSNIFKWQSPHYEVKLIAAATDDLRRDL-KVGRERRWFGQVDNKL----------------------------------HVKLLERRKTKLRGS-------------TAWIRVNGKKLVMETYPEDLRLRDFMVSNRWCRKFAKRHHLSKRRRAHMKNKYKSVKDHLFQMNSFHRKLRQLLQEPAVSGAAAEGAAESDRAGVFPVNNLCYGRFSLNVVRINVDQVGLALVNGMESTWDEKEATRVQFFQPFPVLEKRQCTVNAYIGAG---DKFMMQG--FGGEG-------AAYDPGVDVFFQENAWMDSAT 1888
            P+T A+EQ R+L+CS +HPAPLRHLG+GLR AL  GGT+ T P  G SG+CF         +GH T          G         +   AV+      L  D+   + KKT+GAE+RT Y+N R+ AAVVAELRELE DHAE+IW VHG+S  Q+LA KTGIP  NI KW+      KLIAAA +DL++ L K GRERRWFG  +                                      V+   +R+T   GS             TAWIRVN +KLV+E YP+D R ++F  S+RWCRKFAKRHHLSKRRR +MKNK  SV+D L QM SFHR+LRQLLQEP V  AAA  AAE++ A + PV +  YGRFSLN  R NVDQVGLA VNG++STWDE  A RVQ  QPFP LEKRQCTVN  IGAG   DK       F G G       AAYDPGVDV FQENAWMD  T
Sbjct:  112 PKTVASEQCRSLHCSAVHPAPLRHLGRGLRRALTTGGTMTTLPWHGYSGRCF--------NVGHTTAAARKCTTCEGAVRLSCNQGS--KAVVHQTC--LWSDEERTKRKKTRGAEKRTQYSN-RKKAAVVAELRELEADHAEKIWHVHGVSWQQFLARKTGIPQPNICKWKGD--AEKLIAAAANDLKKYLFKTGRERRWFGDAERSCTCCCCNGATESSECRQPGFESTRESSWWKCIRTTRVQRTFQRRTGGAGSSRSATIFRNEGAXTAWIRVNARKLVVEMYPDDPRAKNFSASDRWCRKFAKRHHLSKRRRTNMKNK--SVEDRLPQMKSFHRRLRQLLQEPPVRRAAAGCAAENNGAAIVPVESPHYGRFSLNT-RFNVDQVGLAFVNGLDSTWDETGALRVQIGQPFPGLEKRQCTVNCCIGAGXAGDKLRRTAVIFRGNGKVSAVEKAAYDPGVDVLFQENAWMDDPT 570          
BLAST of mRNA_H-elongata_contig13121.2256.1 vs. uniprot
Match: A0A6H5JT88_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT88_9PHAE)

HSP 1 Score: 363 bits (931), Expect = 2.850e-109
Identity = 213/358 (59.50%), Postives = 243/358 (67.88%), Query Frame = 2
Query:  851 MFHVPGTCTFELQPRT*VDA--VLDAPTDGLGPDK*SAQPKKTQGAERRT*YTNKRETAAVVAELRELEFDHAERIWRVHGMSCPQYLAMKTGIPVSNIFKWQSPHYEVKLIAAATDDLRRDL-KVGRERRWFGQVDNKLHVKLLERRKTKLRGSTAWIRVNGKKLVMETYPEDLRLRDFMVSNRWCRKFAKRHHLSKRRRAHMKNKYKSVKDHLFQMNSFHRKLRQLLQEPAVSGAAAEGAAESDRAGVFPVNNLCYGRFSLNVVRINVDQVGLALVNGMESTWDEKEATRVQFFQPFPVLEKRQCTVNAYIGAGDKFMMQG--FGGEG-------AAYDPGVDVFFQENAWMDSAT 1888
            M+HV G+C+FELQPRT  D     D P DGL  D+   + KKT+GAE+RT Y+N R+ AAVVAELRELE DHAE+IW VHG+SC Q+LA KTGIP  NI +W       KLIAAA +DL RDL K GRERR  G  + KLH  LL+RRK KLR STAWIRVN +KLV+E YP+D   ++F  S+RWCRKFAKRHHLSKRRR  MK K  SV+D L QM SFHR+LRQLLQ                 A + PV +  YGRFSLN  R NVDQVGLA VNG++STWDE  A RVQ  QPFP LEKRQCTVN  IGAGDK M     F  +G       AAY PGVDV FQEN+W D  T
Sbjct:    1 MYHVRGSCSFELQPRTQGDGDGTSDLPDDGLLSDEERTKGKKTRGAEKRTQYSN-RKKAAVVAELRELEADHAEKIWHVHGVSCQQFLARKTGIPQPNICRWNGD--AEKLIAAAANDLIRDLFKTGRERRRSGDAEKKLHSLLLQRRKRKLRVSTAWIRVNARKLVVEMYPDDPCAKNFSASDRWCRKFAKRHHLSKRRRTSMKKK--SVEDRLPQMKSFHRRLRQLLQXXXXXXXXXXXXXXXXXAAIVPVESSLYGRFSLNA-RFNVDQVGLAFVNGLDSTWDETGALRVQIGQPFPGLEKRQCTVNCCIGAGDKLMPTAVIFRWKGKVSVVEKAAYYPGVDVLFQENSWTDGPT 352          
BLAST of mRNA_H-elongata_contig13121.2256.1 vs. uniprot
Match: A0A6H5LMB4_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMB4_9PHAE)

HSP 1 Score: 351 bits (901), Expect = 2.740e-105
Identity = 188/303 (62.05%), Postives = 223/303 (73.60%), Query Frame = 2
Query:  638 PRTFAAEQGRALYCSVMHPAPLRHLGQGLRCALVAGGTIITPP*QG*SGKCFVVRFHRTRGIGHRTTGGTTMFHVPGTCTFELQPRT*VDAVLDAPTDGLGPDK*SAQPKKTQGAERRT*YTNKRETAAVVAELRELEFDHAERIWRVHGMSCPQYLAMKTGIPVSNIFKWQSPHYEVKLIAAATDDLRRDL-KVGRERRWFGQVDNKLHVKLLERRKTKLRGSTAWIRVNGKKLVMETYPEDLRLRDFMVSNRWCRKFAKRHHLSKRRRAHMKNKYKSVKDHLFQMNSFHRKLRQLLQEPAV 1543
            P+TFA+EQGR+L+CS +HPAPLRHLG+GLR AL  GGT+ TPP  G SG+CF V FH + G GH T  G  ++ V G+C+FELQPRT  D   D P DGL  D    + KK +GAE+R  Y+N R+ AA+V ELRELE DHAE IW VHG+SC Q+LA KTGIP  NI KW       KLIAAA +DL++DL K GRERRWFG  + KLH  LL+RRK KLR STAWI VN +KLV+E YP+D R ++F  S+RWCRKFAKRHHLSKRRR +MKNK  SV+D L QM SFHR+LRQLLQE  V
Sbjct:   38 PKTFASEQGRSLHCSAVHPAPLRHLGRGLRRALATGGTMTTPPWHGYSGRCFHVVFHHSEGGGHTTAAGQKIYDVRGSCSFELQPRTQGDGTSDLPDDGLLSDDELTKRKKRRGAEKRMQYSN-RKKAAMVTELRELEADHAETIWHVHGVSCQQFLARKTGIPQPNICKWNGD--AEKLIAAAANDLKKDLFKTGRERRWFGDAEKKLHSLLLQRRKRKLRVSTAWIGVNARKLVVEMYPDDPRAKNFSASDRWCRKFAKRHHLSKRRRTNMKNK--SVEDRLPQMKSFHRRLRQLLQEQPV 335          
BLAST of mRNA_H-elongata_contig13121.2256.1 vs. uniprot
Match: A0A6H5JLC5_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLC5_9PHAE)

HSP 1 Score: 332 bits (852), Expect = 5.660e-98
Identity = 188/334 (56.29%), Postives = 220/334 (65.87%), Query Frame = 2
Query:  803 FHRTRGIGHRTTGGTTMFHVPGTCTFELQPRT*VDAVLDAPTDGLGPDK*SAQPKKTQGAERRT*YTNKRETAAVVAELRELEFDHAERIWRVHGMSCPQYLAMKTGIPVSNIFKWQSPHYEVKLIAAATDDLRRDL-KVGRERRWFGQVDNKLHVKLLERRKTKLRGSTAWIRVNGKKLVMETYPEDLRLRDFMVSNRWCRKFAKRHHLSKRRRAHMKNKYKSVKDHLFQMNSFHRKLRQLLQEPAVSGAAAEGAAESDRAGVFPVNNLCYGRFSLNVVRINVDQVGLALVNGMESTWDEKEATRVQFFQPFPVLEKRQCTVNAYIGAGDKFM 1801
            F    G GH T  G  M+HV G+C+FELQPRT  D   D P DGL  D+   + KKT+GAE+RT Y+N R+ AAVVAELRELE DHAE++W V G+SC Q+LA KTGIP  NI KW       KLIAAA +DL++DL K GRERRWFG  + KLH  LL+RRK KLR STAWIRVN +KL++  YP+D R ++   S+RWCRKFAKRHHLSKRRR +MKNK  SV+D L Q  SFHR+LRQLLQEP +             A +                      VGLA VNG++STWDE  A RVQ  QPFP LEKRQCTVN  IGAGDK M
Sbjct:    4 FTTQEGGGHTTAAGQKMYHVRGSCSFELQPRTQGDGTSDLPDDGLLSDEERTKRKKTRGAEKRTQYSN-RKKAAVVAELRELEADHAEKMWHVQGVSCQQFLARKTGIPQPNICKWNGD--AEKLIAAAANDLKKDLFKTGRERRWFGDAEEKLHSLLLQRRKRKLRVSTAWIRVNARKLLVAMYPDDPRAKNLSASDRWCRKFAKRHHLSKRRRTNMKNK--SVEDRLPQTKSFHRRLRQLLQEPPIRXXXXXXXXXXXGAAI----------------------VGLAFVNGLDSTWDETGALRVQIGQPFPGLEKRQCTVNCCIGAGDKLM 310          
BLAST of mRNA_H-elongata_contig13121.2256.1 vs. uniprot
Match: A0A6H5JW43_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW43_9PHAE)

HSP 1 Score: 337 bits (863), Expect = 9.310e-98
Identity = 195/388 (50.26%), Postives = 237/388 (61.08%), Query Frame = 2
Query:  638 PRTFAAEQGRALYCSVMHPAPLRHLGQGLRCALVAGGTIITPP*QG*SGKCFVVRFHRTRGIGHRTTGGTTMFHVPGTCTFELQPRT*VDAVLDAPTDGLGPDK*SAQPKKTQGAERRT*YTNKRETAAVVAELRELEFDHAERIWRVHGMSCPQYLAMKTGIPVSNIFKWQSPHYEVKLIAAATDDLRRDLKVGRERRWFGQVDNKLHVKLLERRKTKLRGSTAWIRVNGKKLVMETYPEDLRLRDFMVSNRWCRKFAKRHHLSKRRRAHMKNKYKSVKDHLFQMNSFHRKLRQLLQEPAVSGAAAEGAAESDRAGVFPVNNLCYGRFSLNVVRINVDQVGLALVNGMESTWDEKEATRVQFFQPFPVLEKRQCTVNAYIGAGDKFM 1801
            P+TFA+EQGR+++CS +HPAPLRHLG+GLR AL  GGT+ TPP  G SG+CF V FH + G GH T  G  M+HV G+C+FELQPR   D   D P DGL PD+   + KKT+GAE+RT Y+N R+ AAVVAELRELE +H E+IW VH +SC Q+LA KTGIP  NI         ++L      D + +  V R           LH+ LL+RR  KLR  T WIRVN +KLV+E YP+D   + F  S+RWCRKFAKRHH SKRRR + KNK  SV+D L QM  FHR+LR LLQEP                                         GLA+VNG++STWDE  A RVQ  Q F  L+KRQCTVN  IG GD F+
Sbjct:  216 PKTFASEQGRSVHCSAVHPAPLRHLGRGLRHALATGGTMTTPPRHGYSGRCFHVVFHHSEGGGHTTAAGQEMYHVRGSCSFELQPRIQGDGTSDFPDDGLLPDEERTKRKKTRGAEKRTQYSN-RKKAAVVAELRELEANHTEKIWHVHSVSCQQFLARKTGIPQPNICG------TLRLEERPFQDWQGEEVVRR-------XXXXLHLLLLQRRNRKLRVWTVWIRVNTRKLVVEMYPDDPSAKKFSASDRWCRKFAKRHHFSKRRRTNTKNK--SVEDRLPQMKRFHRRLRHLLQEPPA---------------------------------------GLAIVNGLDSTWDETGALRVQLRQQFRGLDKRQCTVNCCIGGGDNFL 548          
BLAST of mRNA_H-elongata_contig13121.2256.1 vs. uniprot
Match: A0A6H5JAM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAM5_9PHAE)

HSP 1 Score: 327 bits (839), Expect = 1.220e-96
Identity = 222/485 (45.77%), Postives = 256/485 (52.78%), Query Frame = 1
Query: 1216 GWQREEVVWTSRQQATREAAGATQDKAERVDSLDSCQW*EARDGDVSGRPAFKGFYGVEPMVQEVC*APPPVET*ASPHEKQV*VGEGPSFPDE*FPQEAAPITAGASC*RCRXXXXXXXXPRRGLSGE*PLLRTLQLECCAH*CRPSGARTRERHGVDMGREGSHTSAIFSAFSCP*EASMHRQRLHRSWR*VYDARFRR*RGGVRPRSGRFLPRERMDGQRNE--------ECNTLLRLLPPGLTDDLQPVDAGYERLLKVEVGQELDGWLGQEDNLCLWETNNLSAGKRRIMLTQFIAAAAARIDAPSGYRHRLFENTGSAMTAD*WLDDRVTPECVVGLYNFMDADTSSDEEMSDMGDQDDHSYGGRRGGRVNQAPTMMVMISAMPKTPCHSSTAMMTSTPMRTSS----RCSFRTDFVRCPSPPAKLDRASIKRCLFLRRGLGWFLGQISREANPQTSDIYDYRMVLAYDQSIISVKFPL 2634
            G Q EEVV               Q++A+ VDSLDS Q  +AR  +VSGR A    + V P+VQEV  APP +ET A  HE+Q     GPS  DE  PQEAAP  AG +    R         R   S     LR LQ EC A  CRP       +  V    + ++   +   F    E +        +W         +   GV P     L  + +  Q  +        ECNTLLRLLPP LTD+LQPVDAGY RLLKVEVG ELD +LG E+NLCLWETN LSAG RRI+ T+FIA A AR+DA  GYRHRLFE TG AMTAD  LDDR+TPE VVG YNFMD  TSSDEEM D  D+     GG   G  +                     +   S     S            F    SPP KLDRA IKRC+FL RG+GWFLGQISR A PQTS  YDYR+VLAYDQS I V  PL
Sbjct:  122 GRQGEEVVRXXXXXXXXXXXXXAQEEAQSVDSLDSSQREKARGRNVSGRLACNELFSVGPVVQEVREAPPSLETKAHKHEEQA--DGGPSSADEELPQEAAPAAAGTTRSPGRCWGRRREQRRCDRSCGIAPLRALQPEC-AFQCRPDRVHFPRQRQVPAVEKAAYDPGVDVLFQ---ENAWMDGPTCMTWAKHSFLSSMKGEEGVVPEEQSILFADNLHAQTTDDFKKFLHGECNTLLRLLPPKLTDELQPVDAGYGRLLKVEVGNELDEFLGHEENLCLWETNKLSAGARRILFTRFIARAVARMDARPGYRHRLFEKTGLAMTADGSLDDRITPEGVVGAYNFMDGGTSSDEEMPDQDDEVGDDDGGAGAGESSCDSDASXXXXXXXXGDVQDPLSQQESDDNVDSDDDIIAMELPVGFRLQQSPPEKLDRALIKRCVFLTRGMGWFLGQISRAAPPQTSHTYDYRVVLAYDQSTIIVNMPL 600          
BLAST of mRNA_H-elongata_contig13121.2256.1 vs. uniprot
Match: A0A6H5JKI0_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI0_9PHAE)

HSP 1 Score: 323 bits (829), Expect = 5.780e-96
Identity = 192/319 (60.19%), Postives = 219/319 (68.65%), Query Frame = 2
Query:  965 KKTQGAERRT*YTNKRETAAVVAELRELEFDHAERIWRVHGMSCPQYLAMKTGIPVSNIFKWQSPHYEVKLIAAATDDLRRDL-KVGRERRWFGQVDNK-LHVKLLERRKTKLRGSTAWIRVNGKKLVMETYPEDLRLRDFMVSNRWCRKFAKRHHLSKRRRAHMKNKYKSVKDHLFQMNSFHRKLRQLLQEPAVSGAAAEGAAESDRAGVFPVNNLCYGRFSLNVVRINVDQVGLALVNGMESTWDEKEATRVQFFQPFPVLEKRQCTVNAYIGAGDKFMMQG--FGGEG-------AAYDPGVDVFFQENAWMDSAT 1888
            KKT+G E+RT Y+N++E AAVVAELRELE DHA++IW VHG+SC Q+LA KTGIP  NI KW       KLIAAA +DL+ DL K G ERRWFG  +   L   LL+ RK KL  STAWIRVN +KLVME YP+D R + F  S+RWCRKFAKRHH SKRRR +MKNK  SV+D L QM SFHR+LRQLLQEP V  AAA G AE++ A + PV +  YGRFSL+  R  VDQVGLA VNG++STWDE  A R              CTVN  IGAGDK M     F GEG       AAYDPGVDV FQENAWMD  T
Sbjct:   57 KKTRGTEKRTQYSNRKE-AAVVAELRELEADHADKIWHVHGVSCQQFLARKTGIPQPNICKWNGD--AEKLIAAAANDLKNDLFKTGIERRWFGDAEKAALDSLLLQPRKRKLGVSTAWIRVNARKLVMEMYPDDPRAKSFSASDRWCRKFAKRHHPSKRRRTNMKNK--SVEDRLPQMKSFHRRLRQLLQEPPVRRAAAGGEAENNGAAIVPVKSPLYGRFSLDA-RFTVDQVGLAFVNGLDSTWDETGALR--------------CTVNCCIGAGDKLMRTAVIFRGEGKVLAVEKAAYDPGVDVLFQENAWMDGPT 355          
BLAST of mRNA_H-elongata_contig13121.2256.1 vs. uniprot
Match: A0A6H5L2Y0_9PHAE (HTH CENPB-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Y0_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 4.520e-57
Identity = 128/220 (58.18%), Postives = 146/220 (66.36%), Query Frame = 2
Query: 1256 KLHVKLLERRKTKLRGSTAWIRVNGKKLVMETYPEDLRLRDFMVSNRWCRKFAKRHHLSKRRRAHMKNKYKSVKDHLFQMNSFHRKLRQLLQEPAVSGAAAEGAAESDRAGVFPVNNLCYGRFSLNVVRINVDQVGLALVNGMESTWDEKEATRVQFFQPFPVLEKRQCTVNAYIGAGDKFMMQG--FGGEG-------AAYDPGVDVFFQENAWMDSAT 1888
            KLH  LL+RRK +LR STAWIR    KLV+E YP+D R ++F  S+RWC KFAKRHHLSKRRR +MKNK  SV+D L QM SF R+LRQLLQE                A + PV +  YGRFSL   R NVDQVGLA+V+G++S WD   A RVQ  QPFP LEKRQCTVN  IGAGD  M     F G+G       AA+DPGVDV FQENAWMD  T
Sbjct:    2 KLHSLLLQRRKRELRVSTAWIR----KLVVEMYPDDPRAKNFSASDRWCMKFAKRHHLSKRRRTNMKNK--SVEDRLPQMKSFRRRLRQLLQEXXXXXXXXXXXXXXXXAAIVPVESPLYGRFSLTA-RFNVDQVGLAIVDGLDSKWDGTGALRVQIGQPFPGLEKRQCTVNCCIGAGDNLMRTAVIFRGKGKVSAVEKAAHDPGVDVLFQENAWMDGPT 214          
BLAST of mRNA_H-elongata_contig13121.2256.1 vs. uniprot
Match: A0A6H5JUY8_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY8_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 1.530e-55
Identity = 140/309 (45.31%), Postives = 163/309 (52.75%), Query Frame = 1
Query: 1891 ECNTLLRLLPPGLTDDLQPVDAGYERLLKVEVGQELDGWLGQEDNLCLWETNNLSAGKRRIMLTQFIAAAAARIDA-PSGYRHRLFENTGSAMTAD*WLDDRVTPECVVGLYNFMDADTSSDEEMSDMGDQDDHSYGGRRGGRVNQAPT-------MMVMISAMPKTPCHSSTAMMTSTPMRTSSRCSFRTDFVRCPSPPAKLDRASIKRCLFLRRGLGWFLGQISREANPQTSDIYDYRMVLAYDQSIISVKFPLDA*NVDDANTAGRACALID----------GCDESAARRQGNMPRIPNVRNINQ 2763
            ECN LLRLLPP LTD+LQPVDAGY RLLK E+G ELD +LG E+NLCL ETN LSAG RRI+ T+FIA A AR+   P   R     + G  +           P    G    +       E+  +M DQDD             +                    P             R          F    SPP KLDRA +KRC+FLRRG+GWFLGQISR A PQTS  YDYR+VLAYDQS ISVK PLDA +VD+AN A  A ALI+          GC+    RRQG+  R PNVRNI+Q
Sbjct:  226 ECNMLLRLLPPKLTDELQPVDAGYGRLLKGEIGNELDEFLGHEENLCLCETNKLSAGARRILFTRFIARAVARMYVRPGPVRQDRTGDDGRRVIG--------RPHHSGGCSWGVQLHGRGQEQCEEMPDQDDEVGDXXXXXXXXXSSCDSXXXXXXXXXXXXXXXDPRXXXXXXXXXXXDRDIIAMELPVGFRLQESPPEKLDRALVKRCVFLRRGMGWFLGQISRAAPPQTSHTYDYRVVLAYDQSTISVKMPLDAYDVDEANAAVGAWALIEPIDDSNEPAGGCEGEQPRRQGSRARTPNVRNIDQ 526          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13121.2256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVP8_9PHAE2.790e-12362.89HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JZQ9_9PHAE5.380e-11450.73DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JT88_9PHAE2.850e-10959.50HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5LMB4_9PHAE2.740e-10562.05HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JLC5_9PHAE5.660e-9856.29HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JW43_9PHAE9.310e-9850.26C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JAM5_9PHAE1.220e-9645.77DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JKI0_9PHAE5.780e-9660.19HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5L2Y0_9PHAE4.520e-5758.18HTH CENPB-type domain-containing protein (Fragment... [more]
A0A6H5JUY8_9PHAE1.530e-5545.31DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13121contigH-elongata_contig13121:5066..8239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.7
Seed ortholog evalue1.2e-43
Seed eggNOG ortholog2880.D7G1D9
EggNOG OGs2DCSR@1,2S5KN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size3058
Cds size843
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13121.2256.1prot_H-elongata_contig13121.2256.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13121 6310..7152 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929779.5598476-UTR-H-elongata_contig13121:5065..57831622929779.5598476-UTR-H-elongata_contig13121:5065..5783Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13121 5066..5783 -
1691679154.5473723-UTR-H-elongata_contig13121:5065..57831691679154.5473723-UTR-H-elongata_contig13121:5065..5783Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13121 5066..5783 -
1622929779.596145-UTR-H-elongata_contig13121:5899..63091622929779.596145-UTR-H-elongata_contig13121:5899..6309Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13121 5900..6309 -
1691679154.561752-UTR-H-elongata_contig13121:5899..63091691679154.561752-UTR-H-elongata_contig13121:5899..6309Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13121 5900..6309 -
1622929779.6252902-UTR-H-elongata_contig13121:7152..82391622929779.6252902-UTR-H-elongata_contig13121:7152..8239Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13121 7153..8239 -
1691679154.5904694-UTR-H-elongata_contig13121:7152..82391691679154.5904694-UTR-H-elongata_contig13121:7152..8239Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13121 7153..8239 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929779.6135545-CDS-H-elongata_contig13121:6309..71521622929779.6135545-CDS-H-elongata_contig13121:6309..7152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13121 6310..7152 -
1691679154.5787866-CDS-H-elongata_contig13121:6309..71521691679154.5787866-CDS-H-elongata_contig13121:6309..7152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13121 6310..7152 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13121.2256.1

>prot_H-elongata_contig13121.2256.1 ID=prot_H-elongata_contig13121.2256.1|Name=mRNA_H-elongata_contig13121.2256.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=281bp
MSCPQYLAMKTGIPVSNIFKWQSPHYEVKLIAAATDDLRRDLKVGRERRW
FGQVDNKLHVKLLERRKTKLRGSTAWIRVNGKKLVMETYPEDLRLRDFMV
SNRWCRKFAKRHHLSKRRRAHMKNKYKSVKDHLFQMNSFHRKLRQLLQEP
AVSGAAAEGAAESDRAGVFPVNNLCYGRFSLNVVRINVDQVGLALVNGME
STWDEKEATRVQFFQPFPVLEKRQCTVNAYIGAGDKFMMQGFGGEGAAYD
PGVDVFFQENAWMDSATKSATHYYGYFPRA*
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mRNA from alignment at H-elongata_contig13121:5066..8239-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13121.2256.1 ID=mRNA_H-elongata_contig13121.2256.1|Name=mRNA_H-elongata_contig13121.2256.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3174bp|location=Sequence derived from alignment at H-elongata_contig13121:5066..8239- (Himanthalia elongata Himel1 dioecious)
TAATGATCCTTACCTACACTCAAAACTTTATCGAATTAACTGTCAATAAT GGTGACCTCGATCACCAGATAGTCAAATTCTGTGGGTGGGGGGTGTTATA AAGACTAATTATCGAGTTGTAATCGCCAATTGACTTTTACGCTGTGGTGT AATAGTTACCTTGCCTTATCGCGAAACGCCATCGGTACTAGCAATTGCGT GACCTGATGAAACCGGGATTGACCCGATGACGGTTGGCGGTAGAGATGGA CGCCGTCACGGAAAACGGGAGGATCAAGAGGATCCCGGGAGTAAGCACCA GATTTAGCCTGGGTTGAAAGAATGAGCAGGCTGACGCGGGACGGGACGGC CGAACCCGTCTCGCGAGACCAAATTCTCAGGCGCGAACGGGGACAAGGAA AATTATTTTCCATGTTGAGCTGACCACGAGCAGAGCATACATATATATTC ATACATTGCCCGTGGCACACGGTACTTTACTCTCAAATCATTGTTCCCCA AATCTCGTTTTGCTCTCATTTTGCTCTCATTTTGTTCCAGATTAGGTGAA CCCGCAATGACATCCTGGAGGAGATCACCCGCGTCCACTATCCCACTATC CCGTCGTGCCACGCCCTCCTAAGTTGAAGTTCCTTTCCCGAGGACCTTCG CCGCCGAACAAGGCCGGGCGCTATACTGTAGCGTTATGCACCCAGCTCCT CTTCGGCATCTTGGACAAGGGCTGAGATGCGCCCTGGTGGCGGGTGGGAC CATCATAACTCCACCTTGACAAGGGTGATCGGGGAAGTGTTTCGTGGTTC GCTTCCACCGCACACGAGGGATCGGACACAGAACTACAGGCGGCACTACG ATGTTCCACGTGCCAGGGACCTGCACGTTTGAGCTGCAGCCAAGAACTTA AGTGGATGCTGTACTGGACGCGCCAACGGACGGCCTGGGACCGGACAAAT AAAGCGCCCAGCCGAAGAAAACACAAGGAGCTGAACGGAGGACGTAGTAC ACAAATAAGAGGGAGACTGCCGCCGTAGTCGCGGAGCTCCGGGAGCTGGA GTTCGATCACGCTGAGCGAATCTGGCGTGTTCACGGTATGTCGTGTCCGC AGTACTTGGCAATGAAGACAGGCATCCCCGTATCCAACATTTTTAAGTGG CAATCTCCGCATTACGAGGTGAAGCTGATCGCAGCCGCGACAGATGACTT GAGGAGAGACCTCAAGGTTGGCAGAGAGAGGAGGTGGTTTGGACAAGTAG ACAACAAGCTACACGTGAAGCTGCTGGAGCGACGCAAGACAAAGCTGAGA GGGTCGACAGCCTGGATTCGTGTCAATGGTAAGAAGCTCGTGATGGAGAC GTATCCGGAAGACCTGCGTTTAAGGGATTTTATGGTGTCGAACCGATGGT GCAGGAAGTTTGCTAAGCGCCACCACCTGTCGAAACGTAGGCGAGCCCAC ATGAAAAACAAGTATAAGTCGGTGAAGGACCATCTTTTCCAGATGAATAG TTTCCACAGGAAGCTGCGCCAATTACTGCAGGAGCCAGCTGTTAGCGGTG CCGCTGCCGAAGGCGCCGCCGAGAGCGACCGCGCCGGGGTCTTTCCGGTG AATAACCTCTGCTACGGACGCTTCAGCTTGAATGTTGTGCGCATTAATGT CGACCAAGTGGGGCTCGCACTCGTGAACGGCATGGAGTCGACATGGGACG AGAAGGAAGCCACACGAGTGCAATTTTTTCAGCCTTTTCCTGTCCTTGAG AAGCGTCAATGCACCGTCAACGCCTACATCGGAGCTGGCGATAAGTTTAT GATGCAAGGTTTCGGCGGTGAAGGGGCGGCGTACGACCCAGGAGTGGACG TTTTCTTCCAAGAGAACGCATGGATGGACAGCGCAACGAAGAGTGCAACA CACTACTACGGCTACTTCCCCCGGGCTTGACCGATGATCTCCAACCCGTC GATGCCGGCTACGAACGCCTCCTCAAAGTCGAAGTCGGTCAGGAGCTTGA TGGGTGGCTTGGGCAAGAAGACAACCTTTGCCTGTGGGAGACCAACAACC TTTCGGCTGGCAAACGGCGAATCATGCTCACGCAATTCATTGCAGCAGCA GCAGCACGCATAGATGCTCCGTCCGGGTACCGACATCGCCTGTTTGAGAA TACGGGGTCGGCAATGACGGCAGACTGATGGTTGGACGATCGCGTCACTC CGGAGTGTGTAGTTGGCCTGTACAACTTCATGGATGCAGACACAAGCAGC GACGAGGAGATGTCCGACATGGGTGATCAGGACGACCACAGCTATGGGGG GAGGAGAGGGGGAAGAGTGAATCAAGCTCCGACGATGATGGTAAGTTTAG AAATTTTGAGCCGTCCTTCTCTTCAACCGTTTCTCCTCATCTCTGTGCGC TTGTCTTACCCATATATTTTGTTTTGTCGGTTCGTTTGCTACCCATGATC GGCTAGGTGATGATCTCGGCAATGCCCAAAACCCCTTGTCACAGCTCGAC AGCGATGATGACCTCTACCCCGATGAGGACATCATCACGATGCAGCTTCC GGACGGATTTCGTCAGGTGTCCGTCCCCTCCAGCGAAGCTAGACCGCGCG TCGATTAAGCGTTGTTTGTTCTTGAGGCGTGGTTTGGGTTGGTTCCTGGG GCAGATTAGTCGGGAGGCTAACCCGCAAACCAGTGACATATACGACTACC GCATGGTATTGGCATACGATCAAAGCATCATCAGCGTTAAGTTTCCTCTA GATGCGTAAAATGTAGACGACGCGAACACAGCCGGACGAGCATGTGCGTT GATCGATGGTTGCGACGAGTCGGCAGCACGCCGGCAGGGCAACATGCCGC GGATCCCCAACGTTCGCAACATCAACCAGGGATGAGGATGAGGATTGTTA CAGTACAATAATAGTCCGGGACCACTTGACGATTGAATTTCGAAGGGGAT ATACTATATTTTGTCCGACCTCCCGAATGATGACTGATTGCTTGAAGAGG TTCTTGTAGTCCAGTAGTACCGGTAGATACGCACACGCAAGAGTGGGTAA TGCAAGTTTCGTGCTGAAAAGAGTCGGGCATATTATATTACTGTACTGCC TGGAAAATAAGAAATGAAGAAAATAATTTAAAAATGTAATATTCTAGGTC AAAAATAAGAAATTAAATGGTGAC
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Coding sequence (CDS) from alignment at H-elongata_contig13121:5066..8239-

>mRNA_H-elongata_contig13121.2256.1 ID=mRNA_H-elongata_contig13121.2256.1|Name=mRNA_H-elongata_contig13121.2256.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1686bp|location=Sequence derived from alignment at H-elongata_contig13121:5066..8239- (Himanthalia elongata Himel1 dioecious)
ATGTCGTGTCCGCAGTACTTGGCAATGAAGACAGGCATCCCCGTATCCAA
CATTTTTAAGTGGCAATCTCCGCATTACGAGGTGAAGCTGATCGCAGCCG
CGACAGATGACTTGAGGAGAGACCTCAAGGTTGGCAGAGAGAGGAGGTGG
TTTGGACAAGTAGACAACAAGCTACACGTGAAGCTGCTGGAGCGACGCAA
GACAAAGCTGAGAGGGTCGACAGCCTGGATTCGTGTCAATGGTAAGAAGC
TCGTGATGGAGACGTATCCGGAAGACCTGCGTTTAAGGGATTTTATGGTG
TCGAACCGATGGTGCAGGAAGTTTGCTAAGCGCCACCACCTGTCGAAACG
TAGGCGAGCCCACATGAAAAACAAGTATAAGTCGGTGAAGGACCATCTTT
TCCAGATGAATAGTTTCCACAGGAAGCTGCGCCAATTACTGCAGGAGCCA
GCTGTTAGCGGTGCCGCTGCCGAAGGCGCCGCCGAGAGCGACCGCGCCGG
GGTCTTTCCGGTGAATAACCTCTGCTACGGACGCTTCAGCTTGAATGTTG
TGCGCATTAATGTCGACCAAGTGGGGCTCGCACTCGTGAACGGCATGGAG
TCGACATGGGACGAGAAGGAAGCCACACGAGTGCAATTTTTTCAGCCTTT
TCCTGTCCTTGAGAAGCGTCAATGCACCGTCAACGCCTACATCGGAGCTG
GCGATAAGTTTATGATGCAAGGTTTCGGCGGTGAAGGGGCGGCGTACGAC
CCAGGAGTGGACGTTTTCTTCCAAGAGAACGCATGGATGGACAGCGCAAC
GAAGAGTGCAACACACTACTACGGCTACTTCCCCCGGGCTTGAATGTCGT
GTCCGCAGTACTTGGCAATGAAGACAGGCATCCCCGTATCCAACATTTTT
AAGTGGCAATCTCCGCATTACGAGGTGAAGCTGATCGCAGCCGCGACAGA
TGACTTGAGGAGAGACCTCAAGGTTGGCAGAGAGAGGAGGTGGTTTGGAC
AAGTAGACAACAAGCTACACGTGAAGCTGCTGGAGCGACGCAAGACAAAG
CTGAGAGGGTCGACAGCCTGGATTCGTGTCAATGGTAAGAAGCTCGTGAT
GGAGACGTATCCGGAAGACCTGCGTTTAAGGGATTTTATGGTGTCGAACC
GATGGTGCAGGAAGTTTGCTAAGCGCCACCACCTGTCGAAACGTAGGCGA
GCCCACATGAAAAACAAGTATAAGTCGGTGAAGGACCATCTTTTCCAGAT
GAATAGTTTCCACAGGAAGCTGCGCCAATTACTGCAGGAGCCAGCTGTTA
GCGGTGCCGCTGCCGAAGGCGCCGCCGAGAGCGACCGCGCCGGGGTCTTT
CCGGTGAATAACCTCTGCTACGGACGCTTCAGCTTGAATGTTGTGCGCAT
TAATGTCGACCAAGTGGGGCTCGCACTCGTGAACGGCATGGAGTCGACAT
GGGACGAGAAGGAAGCCACACGAGTGCAATTTTTTCAGCCTTTTCCTGTC
CTTGAGAAGCGTCAATGCACCGTCAACGCCTACATCGGAGCTGGCGATAA
GTTTATGATGCAAGGTTTCGGCGGTGAAGGGGCGGCGTACGACCCAGGAG
TGGACGTTTTCTTCCAAGAGAACGCATGGATGGACAGCGCAACGAAGAGT
GCAACACACTACTACGGCTACTTCCCCCGGGCTTGA
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