mRNA_H-elongata_contig131165.2254.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131165.2254.1
Unique NamemRNA_H-elongata_contig131165.2254.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig131165.2254.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.590e-25
Identity = 57/84 (67.86%), Postives = 67/84 (79.76%), Query Frame = 2 
Query:    5 LGICGSVKKCKNPEMEKLMKKLAALVGVFSHSAVNNDEFKDIQTDLLTEGFDEVLELIRRNDTRWTTQHAMMSRILNLKKPLME 256
            LGI GS++  +NP MEKLMK+LAA+VGVFSHSAVNNDE KDIQ   L E F  + ELIRRNDTRW +QHAMM R+L LKK ++E
Sbjct:   60 LGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQR--LQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVE 141
[Close]
BLAST of mRNA_H-elongata_contig131165.2254.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 2.730e-25
Identity = 57/84 (67.86%), Postives = 67/84 (79.76%), Query Frame = 2 
Query:    5 LGICGSVKKCKNPEMEKLMKKLAALVGVFSHSAVNNDEFKDIQTDLLTEGFDEVLELIRRNDTRWTTQHAMMSRILNLKKPLME 256
            LGI GS++  +NP MEKLMK+LAA+VGVFSHSAVNNDE KDIQ   L E F  + ELIRRNDTRW +QHAMM R+L LKK ++E
Sbjct:  388 LGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQR--LQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVE 469
[Close]
BLAST of mRNA_H-elongata_contig131165.2254.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 8.560e-22
Identity = 54/84 (64.29%), Postives = 62/84 (73.81%), Query Frame = 2 
Query:    5 LGICGSVKKCKNPEMEKLMKKLAALVGVFSHSAVNNDEFKDIQTDLLTEGFDEVLELIRRNDTRWTTQHAMMSRILNLKKPLME 256
            LGI G  K   NP M  LMKKLAA+VGVFSHSAVNNDE K++Q   L EGF  + EL+RRNDTRWT+Q  MM R+L LKKP+ E
Sbjct:  400 LGIAG--KGRLNPAMGTLMKKLAAMVGVFSHSAVNNDELKELQR--LEEGFSRIYELLRRNDTRWTSQFKMMDRVLALKKPISE 479
[Close]
BLAST of mRNA_H-elongata_contig131165.2254.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 7.130e-21
Identity = 53/84 (63.10%), Postives = 61/84 (72.62%), Query Frame = 2 
Query:    5 LGICGSVKKCKNPEMEKLMKKLAALVGVFSHSAVNNDEFKDIQTDLLTEGFDEVLELIRRNDTRWTTQHAMMSRILNLKKPLME 256
            LGI G  K   NP M  LMKKLAA+VGVFSHSAVNNDE K++Q   L EGF  + EL+R NDTRWT+Q  MM R+L LKKP+ E
Sbjct:  205 LGIAG--KGRLNPAMGTLMKKLAAMVGVFSHSAVNNDELKELQR--LEEGFSRIYELLRPNDTRWTSQFKMMDRVLALKKPISE 284
[Close]
BLAST of mRNA_H-elongata_contig131165.2254.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 7.450e-20
Identity = 54/85 (63.53%), Postives = 62/85 (72.94%), Query Frame = 2 
Query:    5 LGICGSVKKCKNPEMEKLMKKLAALVGVFSHSAVNNDEFKDIQTDLLTEGFDEVLELIRRNDTRW-TTQHAMMSRILNLKKPLME 256
            LGI  + K  KNP M  LMKKLAA+VGVFSHSAVNNDE K++Q   L EGF  + EL+RRNDTRW T+Q  MM R L LKKP+ E
Sbjct:   49 LGI--AAKGRKNPTMGTLMKKLAAMVGVFSHSAVNNDELKELQR--LEEGFSRIYELLRRNDTRWWTSQLKMMDRALALKKPISE 129
[Close]
BLAST of mRNA_H-elongata_contig131165.2254.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.920e-19
Identity = 52/84 (61.90%), Postives = 58/84 (69.05%), Query Frame = 2 
Query:    5 LGICGSVKKCKNPEMEKLMKKLAALVGVFSHSAVNNDEFKDIQTDLLTEGFDEVLELIRRNDTRWTTQHAMMSRILNLKKPLME 256
            LGI GSV  CKN    K MKKLAALVGVFSHSAVNND  K++Q   L      + E IRRNDTRWT+Q  MM R+L LKKP+ E
Sbjct:  209 LGIAGSVTTCKN----KPMKKLAALVGVFSHSAVNNDMLKELQR--LEADLHRIYETIRRNDTRWTSQQKMMGRLLILKKPISE 286
[Close]
BLAST of mRNA_H-elongata_contig131165.2254.1 vs. uniprot
Match: A0A6H5KZZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZZ1_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.310e-19
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:   47 MEKLMKKLAALVGVFSHSAVNNDEFKDIQTDLLTEGFDEVLELIRRNDTRWTTQHAMMSRILNLKKPLME 256
            M  LMKKLAA+VGVF+HSAVNNDE K++Q   L EGF  + EL+RRNDTRWT+Q  MM R L LKKP+ E
Sbjct:    1 MGTLMKKLAAMVGVFNHSAVNNDELKELQR--LEEGFSRIYELLRRNDTRWTSQFKMMDRCLALKKPISE 68
[Close]
BLAST of mRNA_H-elongata_contig131165.2254.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.010e-18
Identity = 51/84 (60.71%), Postives = 57/84 (67.86%), Query Frame = 2 
Query:    5 LGICGSVKKCKNPEMEKLMKKLAALVGVFSHSAVNNDEFKDIQTDLLTEGFDEVLELIRRNDTRWTTQHAMMSRILNLKKPLME 256
            LGI GS   CKN    K MKKLAALVGVFSHSAVNND  K++Q   L      + E IRRNDTRWT+Q  MM R+L LKKP+ E
Sbjct:  209 LGIAGSATTCKN----KPMKKLAALVGVFSHSAVNNDMLKELQR--LEADLHRIYETIRRNDTRWTSQQKMMGRLLILKKPISE 286
[Close]
BLAST of mRNA_H-elongata_contig131165.2254.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.050e-18
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 2 
Query:    5 LGICGSVKKCKNPEMEKLMKKLAALVGVFSHSAVNNDEFKDIQTDLLTEGFDEVLELIRRNDTRWTTQHAMMSRILNLKKPLME 256
            LGI G+ ++  N  M  LMKKLAALVGVFSHSAVNND+ K++Q   L E    V +LIRRNDTRWT+Q  MM R+L LKKP+ E
Sbjct:  398 LGIAGNGRR--NKVMGDLMKKLAALVGVFSHSAVNNDKLKELQR--LEEDLHAVYQLIRRNDTRWTSQFKMMDRLLALKKPITE 477
[Close]
BLAST of mRNA_H-elongata_contig131165.2254.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 4.040e-17
Identity = 41/65 (63.08%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:  265 RHSSNARKLTSHEWKVTNEVCSLLDVVAEVTIRIQGGADTHISQTMFNMREIHEIFSEDDHAIRV 459
            +H    RKLT+HEW VTNEVCSLLD V+E TIR+QG ADTHISQ  F + E+ E+  ED H IRV
Sbjct:  290 QHKQLKRKLTAHEWTVTNEVCSLLDTVSEATIRMQGAADTHISQATFIVHEVMEMLKEDSHPIRV 354
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131165.2254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE1.590e-2567.86Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE2.730e-2567.86Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE8.560e-2264.29Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JTB8_9PHAE7.130e-2163.10Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KAS2_9PHAE7.450e-2063.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU3_9PHAE2.920e-1961.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZZ1_9PHAE3.310e-1965.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE1.010e-1860.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE1.050e-1860.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE4.040e-1763.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131165contigH-elongata_contig131165:1096..1837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size474
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131165.2254.1prot_H-elongata_contig131165.2254.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131165 1142..1655 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929779.3217304-UTR-H-elongata_contig131165:1095..11411622929779.3217304-UTR-H-elongata_contig131165:1095..1141Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131165 1096..1141 +
1691679154.4588177-UTR-H-elongata_contig131165:1095..11411691679154.4588177-UTR-H-elongata_contig131165:1095..1141Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131165 1096..1141 +
1622929779.409563-UTR-H-elongata_contig131165:1655..18371622929779.409563-UTR-H-elongata_contig131165:1655..1837Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131165 1656..1837 +
1691679154.4881692-UTR-H-elongata_contig131165:1655..18371691679154.4881692-UTR-H-elongata_contig131165:1655..1837Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131165 1656..1837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929779.3406975-CDS-H-elongata_contig131165:1141..12901622929779.3406975-CDS-H-elongata_contig131165:1141..1290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131165 1142..1290 +
1691679154.4691236-CDS-H-elongata_contig131165:1141..12901691679154.4691236-CDS-H-elongata_contig131165:1141..1290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131165 1142..1290 +
1622929779.3988729-CDS-H-elongata_contig131165:1558..16551622929779.3988729-CDS-H-elongata_contig131165:1558..1655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131165 1559..1655 +
1691679154.4787471-CDS-H-elongata_contig131165:1558..16551691679154.4787471-CDS-H-elongata_contig131165:1558..1655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131165 1559..1655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131165.2254.1

>prot_H-elongata_contig131165.2254.1 ID=prot_H-elongata_contig131165.2254.1|Name=mRNA_H-elongata_contig131165.2254.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
MEKLMKKLAALVGVFSHSAVNNDEFKDIQTDLLTEGFDEVLELIRRNDTR
WTTQHAMMSRILNLKKPLMETSGGTPATRGS*
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mRNA from alignment at H-elongata_contig131165:1096..1837+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131165.2254.1 ID=mRNA_H-elongata_contig131165.2254.1|Name=mRNA_H-elongata_contig131165.2254.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=742bp|location=Sequence derived from alignment at H-elongata_contig131165:1096..1837+ (Himanthalia elongata Himel1 dioecious)
GGTGCTTGGTATATGCGGTTCCGTCAAGAAGTGCAAAAACCCGGAGATGG
AAAAGCTGATGAAGAAACTGGCGGCGCTTGTGGGGGTTTTCAGTCATTCT
GCTGTCAACAACGATGAGTTCAAGGACATTCAGACCGATTTACTTACGGA
GGGTTTCGACGAAGTCCTCGAGCTCATCAGACGCAATGACACAAGGTGAT
CTAGTCCTAATTACGAATGACTAATTACCAGCTGCTGATTACCAGTAGAA
ACTCCGAGAACGCCATGCAAAATCTATCCTGTGTATTGCTGGTTTTGTAT
TTTGTATTTTTCGGGTATTTTTCGGGTATTTTTCGGGTATTTTTCTAGTT
TTTTGCATTGCCCACTCGTATGGTGTTTACGACTTCTATACTTTCTTGTT
CAGACCCTGAACCCTGGCCCCGCCCCTCCCTCCTCTTCATTGCTGTGACT
TCTTGGCCAACAGGTGGACCACGCAACATGCCATGATGTCTCGGATACTC
AACCTGAAGAAGCCCCTCATGGAGACTTCAGGCGGCACTCCAGCAACGCG
CGGAAGTTGACTTCGCACGAGTGGAAGGTGACCAACGAGGTGTGCAGCCT
ACTTGACGTCGTCGCCGAGGTGACCATCAGGATCCAAGGGGGCGCTGACA
CCCACATAAGCCAGACCATGTTCAACATGAGGGAGATTCACGAAATATTT
AGTGAGGATGACCACGCCATCCGCGTACCAGACCAAGACTAC
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Coding sequence (CDS) from alignment at H-elongata_contig131165:1096..1837+

>mRNA_H-elongata_contig131165.2254.1 ID=mRNA_H-elongata_contig131165.2254.1|Name=mRNA_H-elongata_contig131165.2254.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig131165:1096..1837+ (Himanthalia elongata Himel1 dioecious)
ATGGAAAAGCTGATGAAGAAACTGGCGGCGCTTGTGGGGGTTTTCAGTCA
TTCTGCTGTCAACAACGATGAGTTCAAGGACATTCAGACCGATTTACTTA
CGGAGGGTTTCGACGAAGTCCTCGAGCTCATCAGACGCAATGACACAAGA
TGGAAAAGCTGATGAAGAAACTGGCGGCGCTTGTGGGGGTTTTCAGTCAT
TCTGCTGTCAACAACGATGAGTTCAAGGACATTCAGACCGATTTACTTAC
GGAGGGTTTCGACGAAGTCCTCGAGCTCATCAGACGCAATGACACAAGGT
GGACCACGCAACATGCCATGATGTCTCGGATACTCAACCTGAAGAAGCCC
CTCATGGAGACTTCAGGCGGCACTCCAGCAACGCGCGGAAGTTGAGTGGA
CCACGCAACATGCCATGATGTCTCGGATACTCAACCTGAAGAAGCCCCTC
ATGGAGACTTCAGGCGGCACTCCAGCAACGCGCGGAAGTTGA
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