mRNA_H-elongata_contig13116.2253.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13116.2253.1 vs. uniprot
Match: D8LAZ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ9_ECTSI) HSP 1 Score: 214 bits (546), Expect = 1.580e-63 Identity = 101/111 (90.99%), Postives = 107/111 (96.40%), Query Frame = 3
Query: 165 QEVGDEAQLSAVLDLYPVYRAIWAVHQNEAYGDKSIDDAFFERDVEMLELAFDGQMHFGCFYAYVKLKEQEIRNLVWISECIVQQQRDEIGKYIPLFSDNAPWKVARRSGR 497
QEVGDE+QL+AVLD+YPVYR IWAVHQNEAYGDKSIDDAFFERDV+MLELAF GQMHFG FYAYVKLKEQEIRNLVWISECIVQQQRDEIGKYIPLFS+NA WKVARR+GR
Sbjct: 286 QEVGDESQLAAVLDMYPVYRGIWAVHQNEAYGDKSIDDAFFERDVDMLELAFQGQMHFGPFYAYVKLKEQEIRNLVWISECIVQQQRDEIGKYIPLFSENASWKVARRAGR 396
BLAST of mRNA_H-elongata_contig13116.2253.1 vs. uniprot
Match: A0A836CAY8_9STRA (V0 complex, c/d subunit of ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAY8_9STRA) HSP 1 Score: 187 bits (476), Expect = 4.570e-53 Identity = 87/109 (79.82%), Postives = 99/109 (90.83%), Query Frame = 3
Query: 168 EVGDEAQLSAVLDLYPVYRAIWAVHQNEAYGDKSIDDAFFERDVEMLELAFDGQMHFGCFYAYVKLKEQEIRNLVWISECIVQQQRDEIGKYIPLFSDNAPWKVARRSG 494
EV DEAQL+AVL+ +PV+R IWAVH NE +G KSIDDAF+ERDVEMLELAF+GQMHFG FYAYVKLKEQEIRNLVWI ECIVQ+QRDEI K++PLFS+NAPW+VARR G
Sbjct: 291 EVSDEAQLAAVLEPFPVFREIWAVHLNENFGHKSIDDAFYERDVEMLELAFEGQMHFGPFYAYVKLKEQEIRNLVWIGECIVQRQRDEIHKFVPLFSENAPWRVARRGG 399
BLAST of mRNA_H-elongata_contig13116.2253.1 vs. uniprot
Match: A0A5D6XZX1_9STRA (V-type proton ATPase subunit n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZX1_9STRA) HSP 1 Score: 170 bits (431), Expect = 1.630e-46 Identity = 76/107 (71.03%), Postives = 90/107 (84.11%), Query Frame = 3
Query: 168 EVGDEAQLSAVLDLYPVYRAIWAVHQNEAYGDKSIDDAFFERDVEMLELAFDGQMHFGCFYAYVKLKEQEIRNLVWISECIVQQQRDEIGKYIPLFSDNAPWKVARR 488
E GDEA L AVL+ YPVYR IW VHQ+E +KSIDDAF+ERDV+M ELAF QMHFGCF+AYVKLKEQE+RNLVWISECIVQ+QRD I +IP+FSD+APW+ ++
Sbjct: 284 EAGDEAALGAVLEAYPVYRKIWEVHQSEGVDNKSIDDAFYERDVQMSELAFQSQMHFGCFFAYVKLKEQEVRNLVWISECIVQKQRDAINNFIPIFSDSAPWRSTQK 390
BLAST of mRNA_H-elongata_contig13116.2253.1 vs. uniprot
Match: A0A2P4XPD0_9STRA (H-or Na-translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPD0_9STRA) HSP 1 Score: 164 bits (416), Expect = 1.830e-46 Identity = 73/107 (68.22%), Postives = 84/107 (78.50%), Query Frame = 3
Query: 168 EVGDEAQLSAVLDLYPVYRAIWAVHQNEAYGDKSIDDAFFERDVEMLELAFDGQMHFGCFYAYVKLKEQEIRNLVWISECIVQQQRDEIGKYIPLFSDNAPWKVARR 488
E GDE+ L + LD +PVYR IW VHQ E KSIDDAF+ERDV+M ELAF QMHF CFYAYVKLKEQE+RNLVWI ECIVQ QRD I +IP+FSD+APW + R+
Sbjct: 26 EAGDESSLGSALDSFPVYRKIWEVHQGEGVDSKSIDDAFYERDVQMAELAFQSQMHFACFYAYVKLKEQEVRNLVWICECIVQNQRDAINNFIPIFSDSAPWPIKRQ 132
BLAST of mRNA_H-elongata_contig13116.2253.1 vs. uniprot
Match: F0XZC2_AURAN (V-type proton ATPase subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZC2_AURAN) HSP 1 Score: 169 bits (429), Expect = 2.500e-46 Identity = 75/105 (71.43%), Postives = 90/105 (85.71%), Query Frame = 3
Query: 168 EVGDEAQLSAVLDLYPVYRAIWAVHQNEAYGDKSIDDAFFERDVEMLELAFDGQMHFGCFYAYVKLKEQEIRNLVWISECIVQQQRDEIGKYIPLFSDNAPWKVA 482
+V DE QL A + +PVYR IWAVHQNE+ D+SIDDAF+ER+V+MLELAF+GQMHFG +YAYVKLKEQEIRNLVWISECIVQQQ+DEI K++P FS APW+ +
Sbjct: 277 DVADEGQLGAAVSHFPVYREIWAVHQNESVDDRSIDDAFYEREVQMLELAFEGQMHFGIYYAYVKLKEQEIRNLVWISECIVQQQKDEINKFVPCFSSTAPWRAS 381
BLAST of mRNA_H-elongata_contig13116.2253.1 vs. uniprot
Match: A0A024UPC9_9STRA (V-type proton ATPase subunit n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024UPC9_9STRA) HSP 1 Score: 165 bits (417), Expect = 1.990e-44 Identity = 74/107 (69.16%), Postives = 88/107 (82.24%), Query Frame = 3
Query: 168 EVGDEAQLSAVLDLYPVYRAIWAVHQNEAYGDKSIDDAFFERDVEMLELAFDGQMHFGCFYAYVKLKEQEIRNLVWISECIVQQQRDEIGKYIPLFSDNAPWKVARR 488
EVGDEA L VL+ + +YR IW +HQ+E +KSIDDAF+ERDV M ELAF QMHFGCFYA+VKLKEQE+RNLVWISECIVQ QRD I +IP+FS+NAPW+VA +
Sbjct: 284 EVGDEASLGLVLEPHQIYRKIWEIHQSEGVDNKSIDDAFYERDVMMCELAFQSQMHFGCFYAFVKLKEQEVRNLVWISECIVQNQRDAIQNFIPIFSENAPWRVAAK 390
BLAST of mRNA_H-elongata_contig13116.2253.1 vs. uniprot
Match: A0A7S2SPG4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPG4_9STRA) HSP 1 Score: 155 bits (392), Expect = 3.960e-44 Identity = 73/108 (67.59%), Postives = 91/108 (84.26%), Query Frame = 3
Query: 168 EVGDEAQLSAVLDLYPVYRAIWAVHQNEAYGD-KSIDDAFFERDVEMLELAFDGQMHFGCFYAYVKLKEQEIRNLVWISECIVQQQRDEIGKYIPLFSDNAPWKVARR 488
+VGDE +L VL+L+P Y +IW VH A GD KSIDDAF+ERDV+MLELAF+GQMH+G FYAYVKLKEQEIRNLVWISECI+QQQ++EI K++P+FS +APW+ +
Sbjct: 2 DVGDEDELGRVLELFPQYASIWNVHA--AGGDGKSIDDAFYERDVQMLELAFEGQMHYGAFYAYVKLKEQEIRNLVWISECILQQQKEEINKFVPVFSFHAPWRAGSK 107
BLAST of mRNA_H-elongata_contig13116.2253.1 vs. uniprot
Match: F0WW29_9STRA (V-type proton ATPase subunit n=5 Tax=Albugo TaxID=65356 RepID=F0WW29_9STRA) HSP 1 Score: 164 bits (414), Expect = 5.140e-44 Identity = 71/107 (66.36%), Postives = 86/107 (80.37%), Query Frame = 3
Query: 168 EVGDEAQLSAVLDLYPVYRAIWAVHQNEAYGDKSIDDAFFERDVEMLELAFDGQMHFGCFYAYVKLKEQEIRNLVWISECIVQQQRDEIGKYIPLFSDNAPWKVARR 488
+ GDEA + +VLD YPVY+ IW VHQ++ +KSIDDAFFE++V+M EL F QMHFGCFY YVKLKEQEIRN+VWI ECIVQ QRD I +IP+FSDNAPW+ + R
Sbjct: 284 DAGDEASIGSVLDSYPVYKKIWEVHQSQGIDNKSIDDAFFEQEVQMAELTFQSQMHFGCFYGYVKLKEQEIRNIVWICECIVQNQRDAINNFIPIFSDNAPWRSSNR 390
BLAST of mRNA_H-elongata_contig13116.2253.1 vs. uniprot
Match: W2L4R1_PHYPR (V-type proton ATPase subunit n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2L4R1_PHYPR) HSP 1 Score: 163 bits (412), Expect = 8.480e-44 Identity = 73/103 (70.87%), Postives = 81/103 (78.64%), Query Frame = 3
Query: 168 EVGDEAQLSAVLDLYPVYRAIWAVHQNEAYGDKSIDDAFFERDVEMLELAFDGQMHFGCFYAYVKLKEQEIRNLVWISECIVQQQRDEIGKYIPLFSDNAPWK 476
E GDE+ L A LD +PVYR IW VHQ E KSIDDAF+ERDV+M ELAF QMHF CFYAYVKLKEQE+RNLVWI ECIVQ QRD I +IP+FSD APW+
Sbjct: 275 EAGDESSLGAALDSFPVYRKIWEVHQGEGVDSKSIDDAFYERDVQMAELAFQSQMHFACFYAYVKLKEQEVRNLVWICECIVQNQRDAINNFIPIFSDTAPWR 377
BLAST of mRNA_H-elongata_contig13116.2253.1 vs. uniprot
Match: H3H4A6_PHYRM (V-type proton ATPase subunit n=28 Tax=Oomycota TaxID=4762 RepID=H3H4A6_PHYRM) HSP 1 Score: 162 bits (411), Expect = 1.450e-43 Identity = 73/103 (70.87%), Postives = 82/103 (79.61%), Query Frame = 3
Query: 168 EVGDEAQLSAVLDLYPVYRAIWAVHQNEAYGDKSIDDAFFERDVEMLELAFDGQMHFGCFYAYVKLKEQEIRNLVWISECIVQQQRDEIGKYIPLFSDNAPWK 476
E GDE+ L A LD +PVYR IW VHQ E KSIDDAF+ERDV+M ELAF QMHF CFYAYVKLKEQE+RNLVWI ECIVQ QRD I +IP+FSD+APW+
Sbjct: 284 EAGDESALGAALDPFPVYRKIWEVHQGEGVDSKSIDDAFYERDVQMAELAFQSQMHFACFYAYVKLKEQEVRNLVWICECIVQNQRDAINNFIPIFSDSAPWR 386 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13116.2253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13116.2253.1 >prot_H-elongata_contig13116.2253.1 ID=prot_H-elongata_contig13116.2253.1|Name=mRNA_H-elongata_contig13116.2253.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=220bp MRARVKCQELYRQPPSHLPSRAVSLSDTRAYAGGRGRGTAVGSARSVPSLback to top mRNA from alignment at H-elongata_contig13116:5122..6739- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13116.2253.1 ID=mRNA_H-elongata_contig13116.2253.1|Name=mRNA_H-elongata_contig13116.2253.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1618bp|location=Sequence derived from alignment at H-elongata_contig13116:5122..6739- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13116:5122..6739- >mRNA_H-elongata_contig13116.2253.1 ID=mRNA_H-elongata_contig13116.2253.1|Name=mRNA_H-elongata_contig13116.2253.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1320bp|location=Sequence derived from alignment at H-elongata_contig13116:5122..6739- (Himanthalia elongata Himel1 dioecious)back to top |