mRNA_H-elongata_contig131100.2251.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131100.2251.1
Unique NamemRNA_H-elongata_contig131100.2251.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig131100.2251.1 vs. uniprot
Match: A0A6H5JZQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ7_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.260e-39
Identity = 84/143 (58.74%), Postives = 101/143 (70.63%), Query Frame = 1 
Query:    1 LVWFRSSAGGGFAEIKGVNGPYYQLSADDVGSRICVKCTLEESALSAAGVG----VSPARAGN-------RVFVAAQAPSPTRQQAHVAFSEVGPIILDPAVEKEVNALVAQD-PAAFEGLVRRDVPGESVRVRVEVGSEKVR 393
            LVWFRSS+GGGFAEIKGV GP+YQ SADD+GSRIC+KCTL  +AL+  G G    +SP   G        R      + SP RQQ  V+F+EVGPI+LD AV  EV+ L++ D PA F GLVRRD PGE+VRVRVEVG E++R
Sbjct:  465 LVWFRSSSGGGFAEIKGVEGPFYQPSADDLGSRICIKCTLAGTALNLGGTGSGGFLSPTNRGKERRGRHGRXXXXXXSRSPQRQQDQVSFAEVGPIVLDSAVGAEVDKLLSADGPAVFRGLVRRDTPGETVRVRVEVGREQIR 607
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BLAST of mRNA_H-elongata_contig131100.2251.1 vs. uniprot
Match: D7FUZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ4_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 5.120e-38
Identity = 84/151 (55.63%), Postives = 101/151 (66.89%), Query Frame = 1 
Query:    1 LVWFRSSAGGGFAEIKGVNGPYYQLSADDVGSRICVKCTLEESALSAAGVG----VSPA---------------RAGNRVFVAAQAPSPTRQQAHVAFSEVGPIILDPAVEKEVNALVAQD-PAAFEGLVRRDVPGESVRVRVEVGSEKVR 393
            LVWFRSS+GGGFAEIKGV GPYYQ SADD+GSRIC+KCTL  +AL+  G G    +SP                R+G+R        SP RQQ  V+F+E GPI+LD  V  EV+ L++ D PA F GLVRRD PGE+VRVRVEVG E++R
Sbjct:   11 LVWFRSSSGGGFAEIKGVEGPYYQPSADDLGSRICIKCTLAGTALNFGGTGSGGFLSPTNGGKGRRXXXXXGGGRSGSR--------SPQRQQDQVSFAEGGPIVLDSPVGAEVDKLLSADGPAVFRGLVRRDTPGETVRVRVEVGREQIR 153
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BLAST of mRNA_H-elongata_contig131100.2251.1 vs. uniprot
Match: A0A7S3MR33_9CILI (Hypothetical protein n=1 Tax=Fabrea salina TaxID=342563 RepID=A0A7S3MR33_9CILI)

HSP 1 Score: 55.8 bits (133), Expect = 2.090e-6
Identity = 38/129 (29.46%), Postives = 56/129 (43.41%), Query Frame = 1 
Query:    4 VWFRSSAGGGFAEIKGVNGPYYQLSADDVGSRICVKCTLEESALSAAGVGVSPARAGNRVFVAAQAPSPTRQQAHVAFSEVGPIILDPAVEKEVNALVAQDPAAF-------EGLVRRDVPGESVRVRV 369
             W+R+++   F EI GV G +YQ +ADD+G RICV            G+                           AFSEVGP+ +DP VE  V +++  +   F       EG+    V GE  ++R+
Sbjct:   62 TWYRATSEKEFVEIDGVQGAFYQSNADDIGCRICVHAVPVSEVEEYTGMP--------------------------AFSEVGPLEIDPEVESNVQSMLKSESGEFLVTFKSSEGVT--GVKGERFKLRI 162
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BLAST of mRNA_H-elongata_contig131100.2251.1 vs. uniprot
Match: A0A1R2BTE4_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BTE4_9CILI)

HSP 1 Score: 51.6 bits (122), Expect = 6.240e-5
Identity = 30/105 (28.57%), Postives = 47/105 (44.76%), Query Frame = 1 
Query:    4 VWFRSSAGGGFAEIKGVNGPYYQLSADDVGSRICVKCTLEESALSAAGVGVSPARAGNRVFVAAQAPSPTRQQAHVAFSEVGPIILDPAVEKEVNALVAQDPAAF 318
             W+R++    F  I+G+ G +YQ +ADD+G +ICV            G+                           AFSEVGPI +DP ++ +V   +A++ A F
Sbjct:   67 TWYRATDEKEFVTIEGITGAFYQPNADDIGCKICVHAVPVSEVQEYTGMP--------------------------AFSEVGPIQIDPEIQSQVQDFLAKNYATF 145
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131100.2251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JZQ7_9PHAE1.260e-3958.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUZ4_ECTSI5.120e-3855.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3MR33_9CILI2.090e-629.46Hypothetical protein n=1 Tax=Fabrea salina TaxID=3... [more]
A0A1R2BTE4_9CILI6.240e-528.57Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131100contigH-elongata_contig131100:197..1344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_008740.1
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size405
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929779.0815146-CDS-H-elongata_contig131100:196..3581622929779.0815146-CDS-H-elongata_contig131100:196..358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131100 197..358 -
1691679154.3741581-CDS-H-elongata_contig131100:196..3581691679154.3741581-CDS-H-elongata_contig131100:196..358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131100 197..358 -
1622929779.0991578-CDS-H-elongata_contig131100:1101..13441622929779.0991578-CDS-H-elongata_contig131100:1101..1344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131100 1102..1344 -
1691679154.3832107-CDS-H-elongata_contig131100:1101..13441691679154.3832107-CDS-H-elongata_contig131100:1101..1344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131100 1102..1344 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131100.2251.1prot_H-elongata_contig131100.2251.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131100 197..1344 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131100.2251.1

>prot_H-elongata_contig131100.2251.1 ID=prot_H-elongata_contig131100.2251.1|Name=mRNA_H-elongata_contig131100.2251.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
LVWFRSSAGGGFAEIKGVNGPYYQLSADDVGSRICVKCTLEESALSAAGV
GVSPARAGNRVFVAAQAPSPTRQQAHVAFSEVGPIILDPAVEKEVNALVA
QDPAAFEGLVRRDVPGESVRVRVEVGSEKVREKS*
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mRNA from alignment at H-elongata_contig131100:197..1344-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131100.2251.1 ID=mRNA_H-elongata_contig131100.2251.1|Name=mRNA_H-elongata_contig131100.2251.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1148bp|location=Sequence derived from alignment at H-elongata_contig131100:197..1344- (Himanthalia elongata Himel1 dioecious)
CTGGTTTGGTTCCGGTCATCCGCGGGTGGTGGTTTCGCGGAGATCAAGGG
TGTTAACGGCCCGTACTATCAGCTCAGCGCCGACGACGTGGGAAGCCGAA
TCTGCGTCAAGTGCACTCTCGAGGAGTCGGCGCTCTCCGCCGCGGGCGTT
GGCGTATCCCCCGCGCGGGCGGGAAATCGCGTTTTCGTCGCGGCGCAGGC
TCCGAGTCCTACTCGGCAGCAAGCTCATGTCGCCTTCTCGGAGGTACGGT
GCGACGTGCTGTACGTTACCTTGGCGCGCGCTTTTCAATCTAATCCATCG
GTGCTCGTGCATGCTTTAGGGTAAAGCCCCCCCGTTTCCCCACCCCCCCT
TACCCCTTCCCCCCCAGCTCCTCCGATCCCGGCTTGCACGATCTTTGGTT
TCTGCTTTTCTCGCCGTTTTGACGGCCCTATTGAGGGATGAATGTGTCAA
GTATTCGTACGCTAGAGCCTCTGTAGCGTAGCGTATGCTTGTCTACTGTA
CTGTACTAGGCTATAATATTCTACGCCTGGTATAATATGACAATGTTTTT
TTACGTATCTTTGCATGTGTGTTTCTGAATATTGTGTGTGTGTGTATTTA
TTAAATTGCACACAACCGTACAATCCAGCCCTGTAATGCTAGTCATTCTA
GGCTGTGTGTATATATGACACGAGGGGCGCTTAAACATTCTATCATCGCC
GTGGTCTCCTGCGCGATCGATGGATAGATCGATCGATCGCTTGCAGTCAT
CCTACCATACTTAACGAACAAAAGCAATACATCATCCCATATTGCATTAT
TGGCTTGAGTCCGAGAGCTTCGGATATGTACCTTCTTTTTTTTTAAGGTA
GGGGGGGGTTGTTGTGTGTATGTATGTTGGAACTATATATATATATATAT
AAATATATATAGAGAAGAAAATAATATATGTATATAACTGTAGCACCCTC
CGACTCTCCCCTCTGGTGTCTGTGGCCCCTAAAAAGGTGGGTCCGATCAT
CCTCGACCCGGCCGTGGAAAAAGAGGTCAACGCGCTCGTGGCGCAGGATC
CCGCGGCTTTCGAGGGTCTGGTGAGGCGGGACGTCCCGGGAGAGAGTGTT
CGTGTGCGTGTGGAGGTGGGGTCGGAGAAGGTGAGGGAGAAAAGTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig131100:197..1344-

>mRNA_H-elongata_contig131100.2251.1 ID=mRNA_H-elongata_contig131100.2251.1|Name=mRNA_H-elongata_contig131100.2251.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig131100:197..1344- (Himanthalia elongata Himel1 dioecious)
CTGGTTTGGTTCCGGTCATCCGCGGGTGGTGGTTTCGCGGAGATCAAGGG
TGTTAACGGCCCGTACTATCAGCTCAGCGCCGACGACGTGGGAAGCCGAA
TCTGCGTCAAGTGCACTCTCGAGGAGTCGGCGCTCTCCGCCGCGGGCGTT
GGCGTATCCCCCGCGCGGGCGGGAAATCGCGTTTTCGTCGCGGCGCAGGC
TCCGAGTCCTACTCGGCAGCAAGCTCATGTCGCCTTCTCGGAGCTGGTTT
GGTTCCGGTCATCCGCGGGTGGTGGTTTCGCGGAGATCAAGGGTGTTAAC
GGCCCGTACTATCAGCTCAGCGCCGACGACGTGGGAAGCCGAATCTGCGT
CAAGTGCACTCTCGAGGAGTCGGCGCTCTCCGCCGCGGGCGTTGGCGTAT
CCCCCGCGCGGGCGGGAAATCGCGTTTTCGTCGCGGCGCAGGCTCCGAGT
CCTACTCGGCAGCAAGCTCATGTCGCCTTCTCGGAGGTGGGTCCGATCAT
CCTCGACCCGGCCGTGGAAAAAGAGGTCAACGCGCTCGTGGCGCAGGATC
CCGCGGCTTTCGAGGGTCTGGTGAGGCGGGACGTCCCGGGAGAGAGTGTT
CGTGTGCGTGTGGAGGTGGGGTCGGAGAAGGTGAGGGAGAAAAGTTAAGT
GGGTCCGATCATCCTCGACCCGGCCGTGGAAAAAGAGGTCAACGCGCTCG
TGGCGCAGGATCCCGCGGCTTTCGAGGGTCTGGTGAGGCGGGACGTCCCG
GGAGAGAGTGTTCGTGTGCGTGTGGAGGTGGGGTCGGAGAAGGTGAGGGA
GAAAAGTTAA
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