mRNA_H-elongata_contig131069.2248.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131069.2248.1
Unique NamemRNA_H-elongata_contig131069.2248.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig131069.2248.1 vs. uniprot
Match: D7FTN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN6_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 2.280e-19
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:   37 PLHRSLGGSAHVLRRLELSGELKGHRGCVNTVSCTPDGKYWITGSDDRMLMV 192
            PLH + GG+ + LRRLELSGEL+GH GCVNTVSC+PDGKYWI+GSDD  LM+
Sbjct:  169 PLHYAYGGNPNTLRRLELSGELRGHDGCVNTVSCSPDGKYWISGSDDLKLMI 220
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BLAST of mRNA_H-elongata_contig131069.2248.1 vs. uniprot
Match: A0A6H5KJD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD8_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 5.800e-19
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:   37 PLHRSLGGSAHVLRRLELSGELKGHRGCVNTVSCTPDGKYWITGSDDRMLMV 192
            PLH + GG+   LRRLELSGEL+GH GCVNTVSC+PDGKYWI+GSDD  LM+
Sbjct:  167 PLHFAYGGNPITLRRLELSGELRGHEGCVNTVSCSPDGKYWISGSDDLKLMI 218
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BLAST of mRNA_H-elongata_contig131069.2248.1 vs. uniprot
Match: A0A2S3IRK7_9POAL (Uncharacterized protein n=7 Tax=Paniceae TaxID=147428 RepID=A0A2S3IRK7_9POAL)

HSP 1 Score: 59.3 bits (142), Expect = 1.140e-8
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:    1 VGREGAGVWSPDPLHRSLGGSAHVLRRLELSGELKGHRGCVNTVSCTPDGKYWITGSDDRMLMV 192
            VGR   G   P    R + GS H+L R+   G+L+GH GCVNTVS  P G   ++GSDD  +++
Sbjct:   19 VGRREIGSSFPRASSRRISGSEHILMRMTQYGKLRGHDGCVNTVSFNPAGDLLVSGSDDTNIIL 82
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BLAST of mRNA_H-elongata_contig131069.2248.1 vs. uniprot
Match: C5WNL1_SORBI (Uncharacterized protein n=4 Tax=Panicoideae TaxID=147369 RepID=C5WNL1_SORBI)

HSP 1 Score: 58.9 bits (141), Expect = 1.560e-8
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:    1 VGREGAGVWSPDPLHRSLGGSAHVLRRLELSGELKGHRGCVNTVSCTPDGKYWITGSDDRMLMV 192
            VGR   G   P    R + GS H++ R+   G+L+GH GCVNTVS  P G   ++GSDD  +++
Sbjct:   19 VGRREIGSSFPRASSRRISGSEHIVLRMSQYGKLRGHEGCVNTVSFNPAGDLLVSGSDDTNIIL 82
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BLAST of mRNA_H-elongata_contig131069.2248.1 vs. uniprot
Match: J3LMP8_ORYBR (Uncharacterized protein n=10 Tax=Oryzinae TaxID=1648021 RepID=J3LMP8_ORYBR)

HSP 1 Score: 57.8 bits (138), Expect = 4.000e-8
Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:    1 VGREGAGVWSPDPLHRSLGGSAHVLRRLELSGELKGHRGCVNTVSCTPDGKYWITGSDDRMLMV 192
            VGR   G ++P    R + GS  ++ R+   G+L+GH GCVNTVS  P G   ++GSDD  +++
Sbjct:   88 VGRREIGSYTPRASSRRISGSESLMMRMHQYGKLRGHDGCVNTVSFNPAGNLLVSGSDDMDIIL 151
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BLAST of mRNA_H-elongata_contig131069.2248.1 vs. uniprot
Match: A0A5J9WJP4_9POAL (Uncharacterized protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9WJP4_9POAL)

HSP 1 Score: 57.4 bits (137), Expect = 5.440e-8
Identity = 28/64 (43.75%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:    1 VGREGAGVWSPDPLHRSLGGSAHVLRRLELSGELKGHRGCVNTVSCTPDGKYWITGSDDRMLMV 192
            VGR   G   P    R + GS  ++ R+   GELKGH GCVNTVS  P G   ++GSDD  +++
Sbjct:   19 VGRREIGSSFPRASSRRISGSEDIVMRMIKYGELKGHDGCVNTVSFNPSGDLLVSGSDDMNIIL 82
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BLAST of mRNA_H-elongata_contig131069.2248.1 vs. uniprot
Match: UPI0019D61ED9 (DDB1- and CUL4-associated factor 8-like isoform X2 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D61ED9)

HSP 1 Score: 57.0 bits (136), Expect = 7.350e-8
Identity = 27/64 (42.19%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:    1 VGREGAGVWSPDPLHRSLGGSAHVLRRLELSGELKGHRGCVNTVSCTPDGKYWITGSDDRMLMV 192
            VGR   G   P    R + GS H+L R+   G+L+GH GCVNTVS  P G   ++ SDD  +++
Sbjct:   19 VGRREIGSSFPRASSRRISGSEHILMRMTQYGKLRGHDGCVNTVSFNPAGDLLVSSSDDTNIIL 82
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BLAST of mRNA_H-elongata_contig131069.2248.1 vs. uniprot
Match: K4A9B2_SETIT (Uncharacterized protein n=5 Tax=Paniceae TaxID=147428 RepID=K4A9B2_SETIT)

HSP 1 Score: 56.2 bits (134), Expect = 1.390e-7
Identity = 26/64 (40.62%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:    1 VGREGAGVWSPDPLHRSLGGSAHVLRRLELSGELKGHRGCVNTVSCTPDGKYWITGSDDRMLMV 192
            VGR   G   P    R + GS +++ R+   G+L+GH GCVNTVS  P G   ++GSDD  +++
Sbjct:   19 VGRRDIGSSFPRASSRRISGSEYIVMRMTQYGKLRGHDGCVNTVSFNPAGDLLVSGSDDTNIIL 82
[Close]
BLAST of mRNA_H-elongata_contig131069.2248.1 vs. uniprot
Match: B8ALK1_ORYSI (Uncharacterized protein n=1 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=B8ALK1_ORYSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.760e-7
Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:    1 VGREGAGVWSPDPLHRSLGGSAHVLRRLELSGELKGHRGCVNTVSCTPDGKYWITGSDDRMLMV 192
            VGR+  G  +P    R + GS  ++ R+   G+L+GH GCVNTVS  P G   ++GSDD  +++
Sbjct:   19 VGRQEIGSSTPRASSRRISGSEGLVMRMHQYGKLRGHDGCVNTVSFNPAGNLLVSGSDDMDIIL 82
[Close]
BLAST of mRNA_H-elongata_contig131069.2248.1 vs. uniprot
Match: A0A0D3FH42_9ORYZ (Uncharacterized protein n=1 Tax=Oryza barthii TaxID=65489 RepID=A0A0D3FH42_9ORYZ)

HSP 1 Score: 55.8 bits (133), Expect = 1.900e-7
Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:    1 VGREGAGVWSPDPLHRSLGGSAHVLRRLELSGELKGHRGCVNTVSCTPDGKYWITGSDDRMLMV 192
            VGR+  G  +P    R + GS  ++ R+   G+L+GH GCVNTVS  P G   ++GSDD  +++
Sbjct:   19 VGRQEIGSSTPRASSRRISGSEGLVMRMHQYGKLRGHDGCVNTVSFNPAGNLLVSGSDDMDIIL 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131069.2248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FTN6_ECTSI2.280e-1973.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJD8_9PHAE5.800e-1973.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2S3IRK7_9POAL1.140e-843.75Uncharacterized protein n=7 Tax=Paniceae TaxID=147... [more]
C5WNL1_SORBI1.560e-842.19Uncharacterized protein n=4 Tax=Panicoideae TaxID=... [more]
J3LMP8_ORYBR4.000e-840.63Uncharacterized protein n=10 Tax=Oryzinae TaxID=16... [more]
A0A5J9WJP4_9POAL5.440e-843.75Uncharacterized protein n=1 Tax=Eragrostis curvula... [more]
UPI0019D61ED97.350e-842.19DDB1- and CUL4-associated factor 8-like isoform X2... [more]
K4A9B2_SETIT1.390e-740.63Uncharacterized protein n=5 Tax=Paniceae TaxID=147... [more]
B8ALK1_ORYSI1.760e-740.63Uncharacterized protein n=1 Tax=Oryza sativa subsp... [more]
A0A0D3FH42_9ORYZ1.900e-740.63Uncharacterized protein n=1 Tax=Oryza barthii TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131069contigH-elongata_contig131069:1246..1446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue2.1e-15
Seed eggNOG ortholog2880.D7FTN6
Preferred nameDCAF8
KEGG koko:K11795,ko:K11804,ko:K22204
KEGG TC1.A.46.1
GOsGO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0031461,GO:0031974,GO:0031981,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0080008,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.protein modification by small protein conjugation or removal
EggNOG OGsKOG1334@1,KOG1334@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929778.7172623-CDS-H-elongata_contig131069:1245..14461622929778.7172623-CDS-H-elongata_contig131069:1245..1446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131069 1246..1446 +
1691679154.2727385-CDS-H-elongata_contig131069:1245..14461691679154.2727385-CDS-H-elongata_contig131069:1245..1446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131069 1246..1446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131069.2248.1prot_H-elongata_contig131069.2248.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131069 1246..1446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131069.2248.1

>prot_H-elongata_contig131069.2248.1 ID=prot_H-elongata_contig131069.2248.1|Name=mRNA_H-elongata_contig131069.2248.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
VGREGAGVWSPDPLHRSLGGSAHVLRRLELSGELKGHRGCVNTVSCTPDG
KYWITGSDDRMLMVSE*
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mRNA from alignment at H-elongata_contig131069:1246..1446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131069.2248.1 ID=mRNA_H-elongata_contig131069.2248.1|Name=mRNA_H-elongata_contig131069.2248.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig131069:1246..1446+ (Himanthalia elongata Himel1 dioecious)
GTTGGGCGAGAGGGGGCCGGCGTGTGGAGCCCCGATCCGCTGCACAGGTC
GCTTGGCGGCAGCGCTCATGTGCTTCGGCGGCTCGAACTCTCCGGCGAGC
TAAAGGGGCACCGAGGGTGTGTCAACACGGTGTCGTGCACGCCAGATGGA
AAGTACTGGATCACCGGCAGCGATGATAGAATGCTCATGGTGAGTGAGTG
A
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Coding sequence (CDS) from alignment at H-elongata_contig131069:1246..1446+

>mRNA_H-elongata_contig131069.2248.1 ID=mRNA_H-elongata_contig131069.2248.1|Name=mRNA_H-elongata_contig131069.2248.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig131069:1246..1446+ (Himanthalia elongata Himel1 dioecious)
GTTGGGCGAGAGGGGGCCGGCGTGTGGAGCCCCGATCCGCTGCACAGGTC
GCTTGGCGGCAGCGCTCATGTGCTTCGGCGGCTCGAACTCTCCGGCGAGC
TAAAGGGGCACCGAGGGTGTGTCAACACGGTGTCGTGCACGCCAGATGGA
AAGTACTGGATCACCGGCAGCGATGATAGAATGCTCATGGTGAGTGAGTG
AGTTGGGCGAGAGGGGGCCGGCGTGTGGAGCCCCGATCCGCTGCACAGGT
CGCTTGGCGGCAGCGCTCATGTGCTTCGGCGGCTCGAACTCTCCGGCGAG
CTAAAGGGGCACCGAGGGTGTGTCAACACGGTGTCGTGCACGCCAGATGG
AAAGTACTGGATCACCGGCAGCGATGATAGAATGCTCATGGTGAGTGAGT
GA
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