mRNA_H-elongata_contig130947.2238.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130947.2238.1
Unique NamemRNA_H-elongata_contig130947.2238.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig130947.2238.1 vs. uniprot
Match: D7G459_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G459_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 5.830e-32
Identity = 64/100 (64.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:    1 SRAAATAVLWSLVAPGGALVVIEDGNPKGSHTVRSARKMVLRPTSPLSQEGGRHGGSDGATGGKTRA------PYVVGPCRHDKECPLQTGESCCFSQKV 282
            SRAAATAV+WSLVAPGG LV++EDG+ KGSHTVRSAR MVLRP +P  ++GG  G   G   GK         PYV+GPCRHDKECPLQ GE C   QKV
Sbjct:  356 SRAAATAVMWSLVAPGGVLVLVEDGSAKGSHTVRSARHMVLRPPAPSPEQGGDTGKQQGNRRGKRNERQPPPRPYVIGPCRHDKECPLQAGEFCRLQQKV 455          
BLAST of mRNA_H-elongata_contig130947.2238.1 vs. uniprot
Match: W7U9Y7_9STRA (Mitochondrial chloroplast ribosome small subunit component n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U9Y7_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.060e-18
Identity = 50/97 (51.55%), Postives = 63/97 (64.95%), Query Frame = 1
Query:    1 SRAAATAVLWSLVAP-GGALVVIEDGNPKGSHTVRSARKMVLRPTSPLSQEGGRHGGSDGATGGKTRAPYVVGPCRHDKECPLQTGESCCFSQKVKL 288
            SRA AT+++W LVA  GG LVV+EDG+P+GS  VRS RK+VL        EGG  G   G TG + RA   VGPC+HD+ CPL   E C FSQ++ +
Sbjct:  349 SRALATSIMWELVAENGGFLVVVEDGSPEGSRLVRSVRKLVL--------EGGDPGTQAGTTGPQARA-RTVGPCQHDRPCPLPREEWCRFSQRIPI 436          
BLAST of mRNA_H-elongata_contig130947.2238.1 vs. uniprot
Match: C1E277_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E277_MICCC)

HSP 1 Score: 69.3 bits (168), Expect = 1.170e-11
Identity = 37/90 (41.11%), Postives = 51/90 (56.67%), Query Frame = 1
Query:   25 LWSLVAPGGALVVIEDGNPKGSHTVRSARKMVLRPTSPLSQEGGRHGGSDGATGGKTRAPYVVGPCRHDKECPLQTGES---CCFSQKVK 285
            LWS VAPGG LV++E G P+GS  +R AR ++L       +   R+   DG     +   ++V PC+HDK CP+   E    C FSQ+VK
Sbjct:  417 LWSRVAPGGVLVLVEPGTPRGSKLIRRARALIL----DAEKNKTRNRREDGEDADDSFDAHIVAPCQHDKVCPMDGLEGSTWCHFSQRVK 502          
BLAST of mRNA_H-elongata_contig130947.2238.1 vs. uniprot
Match: A0A024UMB9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UMB9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.820e-11
Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:    4 RAAATAVLWSLVAPGGALVVIEDGNPKGSHTVRSARKMVLRPTSPLSQEGGRHGGSDGAT----GGKTRAPYVVGPCRHDKECPLQTGESCCFSQKVKLV 291
            R A  + LWSL+A  G LV+++ GN  GS  VRSAR+ +L   +  ++E      S+ AT    GGK     V+GPC H KECP+Q GE C F Q+   V
Sbjct:  139 RIAVMSTLWSLLAENGRLVIVDRGNSWGSLQVRSARQFILDSLTANAEEMVE---SNDATPRIEGGK-----VLGPCPHQKECPMQEGEWCHFVQRTPRV 230          
BLAST of mRNA_H-elongata_contig130947.2238.1 vs. uniprot
Match: A0A1V9YKE9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YKE9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 7.280e-11
Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:    4 RAAATAVLWSLVAPGGALVVIEDGNPKGSHTVRSARKMVLRPTSPLSQEGGRHGGSDGAT----GGKTRAPYVVGPCRHDKECPLQTGESCCFSQKVKLV 291
            R A  + LWSL+A GG LV+++ GN  GS  VRSAR+ +L   +   +E      SD A     GG+     ++GPC H KECP++ GE C F Q+   V
Sbjct:  249 RIAIVSTLWSLLAEGGRLVIVDRGNSWGSLQVRSARQFILDSLTTNQEE---VIASDDAVPVVEGGR-----ILGPCPHSKECPMKEGEWCHFVQRTPQV 340          
BLAST of mRNA_H-elongata_contig130947.2238.1 vs. uniprot
Match: W4H305_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H305_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 9.920e-11
Identity = 43/100 (43.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:    4 RAAATAVLWSLVAPGGALVVIEDGNPKGSHTVRSARKMVLRPTSPLSQEGGRHGGSDGAT----GGKTRAPYVVGPCRHDKECPLQTGESCCFSQKVKLV 291
            R A  + LWSL+A  G LV+++ GN  GS  VRSAR+ +L     L+        SD AT    GGK     V+GPC H KECP++ GE C F Q+   V
Sbjct:  239 RIAIVSTLWSLLAENGRLVLVDRGNSWGSLQVRSARQFIL---DSLTTNADEVVVSDDATPRIQGGK-----VLGPCPHQKECPMKEGEWCHFVQRTPRV 330          
BLAST of mRNA_H-elongata_contig130947.2238.1 vs. uniprot
Match: A0A067CSR4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CSR4_SAPPC)

HSP 1 Score: 66.6 bits (161), Expect = 9.970e-11
Identity = 42/100 (42.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:    4 RAAATAVLWSLVAPGGALVVIEDGNPKGSHTVRSARKMVLRPTSPLSQEGGRHGGSDGAT----GGKTRAPYVVGPCRHDKECPLQTGESCCFSQKVKLV 291
            R A  + LWSL+A GG LV+++ GN  GS  VRSAR+ VL   +   +E      SD A     GG+     ++GPC H KECP++ GE C F Q+   V
Sbjct:  256 RIAIVSTLWSLLADGGRLVIVDRGNSWGSLQVRSARQFVLDSLTTNQEE---VIASDDAVPHVEGGR-----ILGPCPHAKECPMKEGEWCHFVQRTPQV 347          
BLAST of mRNA_H-elongata_contig130947.2238.1 vs. uniprot
Match: A0A485L598_9STRA (Aste57867_16288 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L598_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 6.430e-10
Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 1
Query:    4 RAAATAVLWSLVAPGGALVVIEDGNPKGSHTVRSARKMVLRP-TSPLSQEGGRHGGSDGATGGKTRAPYVVGPCRHDKECPLQTGESCCFSQKVKLV 291
            R A  + LW L+A  G LV+++ GN  GS  VRSAR+ +L   T+   Q    +  +    GG+     V+GPC H KECP+Q GE C F Q+   V
Sbjct:  236 RIAIVSTLWHLLAENGRLVLVDRGNSWGSLQVRSARQFILDSLTTNQDQVVESNDATPRIQGGR-----VLGPCPHQKECPMQEGEWCHFVQRAPKV 327          
BLAST of mRNA_H-elongata_contig130947.2238.1 vs. uniprot
Match: A0A7S0DBK6_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0DBK6_MICPS)

HSP 1 Score: 63.9 bits (154), Expect = 9.230e-10
Identity = 37/90 (41.11%), Postives = 50/90 (55.56%), Query Frame = 1
Query:   19 AVLWSLVAPGGALVVIEDGNPKGSHTVRSARKMVLRPTSPLSQEGGRHGGSDGATGGKTRAPYVVGPCRHDKECPLQTGESCC-FSQKVK 285
            A LWS VAPGGALV++E G P GS  +R AR+ VL        +  R   +   T       +VV PC+HD+ CP+    + C FSQ+V+
Sbjct:  444 AQLWSRVAPGGALVLVEPGTPNGSRLIRRARQRVL--------DSERDTAARLVTSDDDVDAHVVAPCQHDRACPMDGLPTWCHFSQRVQ 525          
BLAST of mRNA_H-elongata_contig130947.2238.1 vs. uniprot
Match: A0A642VE50_9ASCO (Uncharacterized protein n=1 Tax=Trichomonascus ciferrii TaxID=44093 RepID=A0A642VE50_9ASCO)

HSP 1 Score: 58.2 bits (139), Expect = 9.710e-8
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 1
Query:   16 TAVLWSLVAPGGALVVIEDGNPKGSHTVRSARKMVLRP---TSPLSQ-----EGGRHGGSDGATGGKTRAPY---VVGPCRHDKECPLQTG 255
            TA L SL+ PGG LV++E G+PKG  ++  AR++++RP   TS +S+     +GGR    D    G T  PY   V+ PC H  +CPL  G
Sbjct:  276 TAHLLSLLEPGGVLVLVERGDPKGFESIARARQIMIRPEDHTSDVSKTPRVWKGGRKVVVDDNERGMT-VPYQVKVLAPCAHHGKCPLSVG 365          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130947.2238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7G459_ECTSI5.830e-3264.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7U9Y7_9STRA1.060e-1851.55Mitochondrial chloroplast ribosome small subunit c... [more]
C1E277_MICCC1.170e-1141.11Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A024UMB9_9STRA1.820e-1143.00Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V9YKE9_9STRA7.280e-1141.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
W4H305_9STRA9.920e-1143.00Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A067CSR4_SAPPC9.970e-1142.00Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A485L598_9STRA6.430e-1040.21Aste57867_16288 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S0DBK6_MICPS9.230e-1041.11Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A642VE50_9ASCO9.710e-841.76Uncharacterized protein n=1 Tax=Trichomonascus cif... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130947contigH-elongata_contig130947:1172..1815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue2e-27
Seed eggNOG ortholog2880.D7G459
KEGG rclassRC00553
KEGG koko:K01469
KEGG ReactionR00251
KEGG Pathwayko00480,map00480
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013
EggNOG free text desc.Ribosomal small subunit Rsm22
EggNOG OGsCOG5459@1,KOG2539@2759
EC3.5.2.9
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorysignal peptide
Exons2
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.843855-CDS-H-elongata_contig130947:1171..12761622929777.843855-CDS-H-elongata_contig130947:1171..1276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130947 1172..1276 -
1691679154.0117388-CDS-H-elongata_contig130947:1171..12761691679154.0117388-CDS-H-elongata_contig130947:1171..1276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130947 1172..1276 -
1622929777.9125884-CDS-H-elongata_contig130947:1626..18151622929777.9125884-CDS-H-elongata_contig130947:1626..1815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130947 1627..1815 -
1691679154.02225-CDS-H-elongata_contig130947:1626..18151691679154.02225-CDS-H-elongata_contig130947:1626..1815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130947 1627..1815 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130947.2238.1prot_H-elongata_contig130947.2238.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130947 1172..1815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130947.2238.1

>prot_H-elongata_contig130947.2238.1 ID=prot_H-elongata_contig130947.2238.1|Name=mRNA_H-elongata_contig130947.2238.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
SRAAATAVLWSLVAPGGALVVIEDGNPKGSHTVRSARKMVLRPTSPLSQE
GGRHGGSDGATGGKTRAPYVVGPCRHDKECPLQTGESCCFSQKVKLV*
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mRNA from alignment at H-elongata_contig130947:1172..1815-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130947.2238.1 ID=mRNA_H-elongata_contig130947.2238.1|Name=mRNA_H-elongata_contig130947.2238.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=644bp|location=Sequence derived from alignment at H-elongata_contig130947:1172..1815- (Himanthalia elongata Himel1 dioecious)
AGCAGGGCTGCCGCGACCGCCGTTTTGTGGAGTCTAGTGGCTCCCGGAGG AGCGCTCGTGGTAATCGAGGACGGAAATCCCAAGGGGTCGCACACCGTGC GCTCGGCCAGGAAAATGGTTTTGAGGCCAACGTCCCCGCTCTCTCAGGAA GGTGGGAGGCATGGCGGGAGCGACGGGGCGACGGGGGGGGTACAAGTCAT GCCGCCATCGTGGGTCGTGCAAAGCGCGGGGTTGATTTGAGTGTATGCCG TTTTCGCAAACGGAGCTCCACCTGTCCACGGTTCTTTCTCGATATTTATG CAAGGAGGAGTGTGTACATGTTCGTGCGTGTTTAGGGGGAGGTGAGGGGA GGAAGAAGAGAAGATAAGAGAAGGGAGGAGACTTCTTCTCGCCCGCCCGA GAGCCCGATGCCGTACTTTTCTGGGCGATGACAGAAGACGTACATATTTG TCTCTTTTTCTCTCTCCGGCTCCTCTTCGACACGATCCCCCGCAGCACCA GAGGAAGGAGGTCGTGAGAATGCGCCGAAAGGGTCGGAGAAAACGCGCGC CCCTTACGTGGTGGGACCCTGTCGGCACGACAAGGAGTGCCCGCTGCAGA CGGGGGAGTCTTGCTGTTTCTCGCAAAAGGTGAAGCTTGTATAG
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Coding sequence (CDS) from alignment at H-elongata_contig130947:1172..1815-

>mRNA_H-elongata_contig130947.2238.1 ID=mRNA_H-elongata_contig130947.2238.1|Name=mRNA_H-elongata_contig130947.2238.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig130947:1172..1815- (Himanthalia elongata Himel1 dioecious)
AGCAGGGCTGCCGCGACCGCCGTTTTGTGGAGTCTAGTGGCTCCCGGAGG
AGCGCTCGTGGTAATCGAGGACGGAAATCCCAAGGGGTCGCACACCGTGC
GCTCGGCCAGGAAAATGGTTTTGAGGCCAACGTCCCCGCTCTCTCAGGAA
GGTGGGAGGCATGGCGGGAGCGACGGGGCGACGGGGGGGAGCAGGGCTGC
CGCGACCGCCGTTTTGTGGAGTCTAGTGGCTCCCGGAGGAGCGCTCGTGG
TAATCGAGGACGGAAATCCCAAGGGGTCGCACACCGTGCGCTCGGCCAGG
AAAATGGTTTTGAGGCCAACGTCCCCGCTCTCTCAGGAAGGTGGGAGGCA
TGGCGGGAGCGACGGGGCGACGGGGGGGAAAACGCGCGCCCCTTACGTGG
TGGGACCCTGTCGGCACGACAAGGAGTGCCCGCTGCAGACGGGGGAGTCT
TGCTGTTTCTCGCAAAAGGTGAAGCTTGTATAGAAAACGCGCGCCCCTTA
CGTGGTGGGACCCTGTCGGCACGACAAGGAGTGCCCGCTGCAGACGGGGG
AGTCTTGCTGTTTCTCGCAAAAGGTGAAGCTTGTATAG
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