mRNA_H-elongata_contig130947.2238.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig130947.2238.1 vs. uniprot
Match: D7G459_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G459_ECTSI) HSP 1 Score: 127 bits (318), Expect = 5.830e-32 Identity = 64/100 (64.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query: 1 SRAAATAVLWSLVAPGGALVVIEDGNPKGSHTVRSARKMVLRPTSPLSQEGGRHGGSDGATGGKTRA------PYVVGPCRHDKECPLQTGESCCFSQKV 282
SRAAATAV+WSLVAPGG LV++EDG+ KGSHTVRSAR MVLRP +P ++GG G G GK PYV+GPCRHDKECPLQ GE C QKV
Sbjct: 356 SRAAATAVMWSLVAPGGVLVLVEDGSAKGSHTVRSARHMVLRPPAPSPEQGGDTGKQQGNRRGKRNERQPPPRPYVIGPCRHDKECPLQAGEFCRLQQKV 455
BLAST of mRNA_H-elongata_contig130947.2238.1 vs. uniprot
Match: W7U9Y7_9STRA (Mitochondrial chloroplast ribosome small subunit component n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U9Y7_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 1.060e-18 Identity = 50/97 (51.55%), Postives = 63/97 (64.95%), Query Frame = 1
Query: 1 SRAAATAVLWSLVAP-GGALVVIEDGNPKGSHTVRSARKMVLRPTSPLSQEGGRHGGSDGATGGKTRAPYVVGPCRHDKECPLQTGESCCFSQKVKL 288
SRA AT+++W LVA GG LVV+EDG+P+GS VRS RK+VL EGG G G TG + RA VGPC+HD+ CPL E C FSQ++ +
Sbjct: 349 SRALATSIMWELVAENGGFLVVVEDGSPEGSRLVRSVRKLVL--------EGGDPGTQAGTTGPQARA-RTVGPCQHDRPCPLPREEWCRFSQRIPI 436
BLAST of mRNA_H-elongata_contig130947.2238.1 vs. uniprot
Match: C1E277_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E277_MICCC) HSP 1 Score: 69.3 bits (168), Expect = 1.170e-11 Identity = 37/90 (41.11%), Postives = 51/90 (56.67%), Query Frame = 1
Query: 25 LWSLVAPGGALVVIEDGNPKGSHTVRSARKMVLRPTSPLSQEGGRHGGSDGATGGKTRAPYVVGPCRHDKECPLQTGES---CCFSQKVK 285
LWS VAPGG LV++E G P+GS +R AR ++L + R+ DG + ++V PC+HDK CP+ E C FSQ+VK
Sbjct: 417 LWSRVAPGGVLVLVEPGTPRGSKLIRRARALIL----DAEKNKTRNRREDGEDADDSFDAHIVAPCQHDKVCPMDGLEGSTWCHFSQRVK 502
BLAST of mRNA_H-elongata_contig130947.2238.1 vs. uniprot
Match: A0A024UMB9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UMB9_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 1.820e-11 Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query: 4 RAAATAVLWSLVAPGGALVVIEDGNPKGSHTVRSARKMVLRPTSPLSQEGGRHGGSDGAT----GGKTRAPYVVGPCRHDKECPLQTGESCCFSQKVKLV 291
R A + LWSL+A G LV+++ GN GS VRSAR+ +L + ++E S+ AT GGK V+GPC H KECP+Q GE C F Q+ V
Sbjct: 139 RIAVMSTLWSLLAENGRLVIVDRGNSWGSLQVRSARQFILDSLTANAEEMVE---SNDATPRIEGGK-----VLGPCPHQKECPMQEGEWCHFVQRTPRV 230
BLAST of mRNA_H-elongata_contig130947.2238.1 vs. uniprot
Match: A0A1V9YKE9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YKE9_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 7.280e-11 Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query: 4 RAAATAVLWSLVAPGGALVVIEDGNPKGSHTVRSARKMVLRPTSPLSQEGGRHGGSDGAT----GGKTRAPYVVGPCRHDKECPLQTGESCCFSQKVKLV 291
R A + LWSL+A GG LV+++ GN GS VRSAR+ +L + +E SD A GG+ ++GPC H KECP++ GE C F Q+ V
Sbjct: 249 RIAIVSTLWSLLAEGGRLVIVDRGNSWGSLQVRSARQFILDSLTTNQEE---VIASDDAVPVVEGGR-----ILGPCPHSKECPMKEGEWCHFVQRTPQV 340
BLAST of mRNA_H-elongata_contig130947.2238.1 vs. uniprot
Match: W4H305_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H305_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 9.920e-11 Identity = 43/100 (43.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query: 4 RAAATAVLWSLVAPGGALVVIEDGNPKGSHTVRSARKMVLRPTSPLSQEGGRHGGSDGAT----GGKTRAPYVVGPCRHDKECPLQTGESCCFSQKVKLV 291
R A + LWSL+A G LV+++ GN GS VRSAR+ +L L+ SD AT GGK V+GPC H KECP++ GE C F Q+ V
Sbjct: 239 RIAIVSTLWSLLAENGRLVLVDRGNSWGSLQVRSARQFIL---DSLTTNADEVVVSDDATPRIQGGK-----VLGPCPHQKECPMKEGEWCHFVQRTPRV 330
BLAST of mRNA_H-elongata_contig130947.2238.1 vs. uniprot
Match: A0A067CSR4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CSR4_SAPPC) HSP 1 Score: 66.6 bits (161), Expect = 9.970e-11 Identity = 42/100 (42.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query: 4 RAAATAVLWSLVAPGGALVVIEDGNPKGSHTVRSARKMVLRPTSPLSQEGGRHGGSDGAT----GGKTRAPYVVGPCRHDKECPLQTGESCCFSQKVKLV 291
R A + LWSL+A GG LV+++ GN GS VRSAR+ VL + +E SD A GG+ ++GPC H KECP++ GE C F Q+ V
Sbjct: 256 RIAIVSTLWSLLADGGRLVIVDRGNSWGSLQVRSARQFVLDSLTTNQEE---VIASDDAVPHVEGGR-----ILGPCPHAKECPMKEGEWCHFVQRTPQV 347
BLAST of mRNA_H-elongata_contig130947.2238.1 vs. uniprot
Match: A0A485L598_9STRA (Aste57867_16288 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L598_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 6.430e-10 Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 1
Query: 4 RAAATAVLWSLVAPGGALVVIEDGNPKGSHTVRSARKMVLRP-TSPLSQEGGRHGGSDGATGGKTRAPYVVGPCRHDKECPLQTGESCCFSQKVKLV 291
R A + LW L+A G LV+++ GN GS VRSAR+ +L T+ Q + + GG+ V+GPC H KECP+Q GE C F Q+ V
Sbjct: 236 RIAIVSTLWHLLAENGRLVLVDRGNSWGSLQVRSARQFILDSLTTNQDQVVESNDATPRIQGGR-----VLGPCPHQKECPMQEGEWCHFVQRAPKV 327
BLAST of mRNA_H-elongata_contig130947.2238.1 vs. uniprot
Match: A0A7S0DBK6_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0DBK6_MICPS) HSP 1 Score: 63.9 bits (154), Expect = 9.230e-10 Identity = 37/90 (41.11%), Postives = 50/90 (55.56%), Query Frame = 1
Query: 19 AVLWSLVAPGGALVVIEDGNPKGSHTVRSARKMVLRPTSPLSQEGGRHGGSDGATGGKTRAPYVVGPCRHDKECPLQTGESCC-FSQKVK 285
A LWS VAPGGALV++E G P GS +R AR+ VL + R + T +VV PC+HD+ CP+ + C FSQ+V+
Sbjct: 444 AQLWSRVAPGGALVLVEPGTPNGSRLIRRARQRVL--------DSERDTAARLVTSDDDVDAHVVAPCQHDRACPMDGLPTWCHFSQRVQ 525
BLAST of mRNA_H-elongata_contig130947.2238.1 vs. uniprot
Match: A0A642VE50_9ASCO (Uncharacterized protein n=1 Tax=Trichomonascus ciferrii TaxID=44093 RepID=A0A642VE50_9ASCO) HSP 1 Score: 58.2 bits (139), Expect = 9.710e-8 Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 1
Query: 16 TAVLWSLVAPGGALVVIEDGNPKGSHTVRSARKMVLRP---TSPLSQ-----EGGRHGGSDGATGGKTRAPY---VVGPCRHDKECPLQTG 255
TA L SL+ PGG LV++E G+PKG ++ AR++++RP TS +S+ +GGR D G T PY V+ PC H +CPL G
Sbjct: 276 TAHLLSLLEPGGVLVLVERGDPKGFESIARARQIMIRPEDHTSDVSKTPRVWKGGRKVVVDDNERGMT-VPYQVKVLAPCAHHGKCPLSVG 365 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130947.2238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig130947.2238.1 >prot_H-elongata_contig130947.2238.1 ID=prot_H-elongata_contig130947.2238.1|Name=mRNA_H-elongata_contig130947.2238.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp SRAAATAVLWSLVAPGGALVVIEDGNPKGSHTVRSARKMVLRPTSPLSQEback to top mRNA from alignment at H-elongata_contig130947:1172..1815- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig130947.2238.1 ID=mRNA_H-elongata_contig130947.2238.1|Name=mRNA_H-elongata_contig130947.2238.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=644bp|location=Sequence derived from alignment at H-elongata_contig130947:1172..1815- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig130947:1172..1815- >mRNA_H-elongata_contig130947.2238.1 ID=mRNA_H-elongata_contig130947.2238.1|Name=mRNA_H-elongata_contig130947.2238.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig130947:1172..1815- (Himanthalia elongata Himel1 dioecious)back to top |