mRNA_H-elongata_contig130803.2228.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130803.2228.1
Unique NamemRNA_H-elongata_contig130803.2228.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig130803.2228.1 vs. uniprot
Match: A0A6H5L4K1_9PHAE (GH16 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4K1_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 5.640e-26
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 VRTAGTFSFRYGRLEVKAKLPKGDWLWPAIWLLPEHNAYGVWPASGEIDMM 153
            VRTAGTFSFRYGR+EVKAKLPKGDWLWPAIWLLPE N YG WPASGEID+M
Sbjct:  151 VRTAGTFSFRYGRMEVKAKLPKGDWLWPAIWLLPEQNVYGQWPASGEIDVM 201
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BLAST of mRNA_H-elongata_contig130803.2228.1 vs. uniprot
Match: D7FU25_ECTSI (Endo-1,3-beta-glucanase N-terminal, family GH16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU25_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 9.620e-25
Identity = 47/69 (68.12%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    1 VRTAGTFSFRYGRLEVKAKLPKGDW------------------LWPAIWLLPEHNAYGVWPASGEIDMM 153
            VRTAGTFSFRYGR+EVKAKLPKGDW                  LWPAIWLLPE NAYG WPASGEID+M
Sbjct:   36 VRTAGTFSFRYGRMEVKAKLPKGDWCEGRSERLFCCGACNGFKLWPAIWLLPEQNAYGQWPASGEIDVM 104
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BLAST of mRNA_H-elongata_contig130803.2228.1 vs. uniprot
Match: A0A7S3DIZ0_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DIZ0_9EUKA)

HSP 1 Score: 99.8 bits (247), Expect = 2.300e-24
Identity = 40/51 (78.43%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 VRTAGTFSFRYGRLEVKAKLPKGDWLWPAIWLLPEHNAYGVWPASGEIDMM 153
            +RT  +FSF+YGR+EV+AKLPKGDWLWPAIWL+PEHN YG WPASGEID+M
Sbjct:  151 LRTVNSFSFKYGRVEVRAKLPKGDWLWPAIWLIPEHNEYGQWPASGEIDIM 201
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BLAST of mRNA_H-elongata_contig130803.2228.1 vs. uniprot
Match: A0A7S3MQE5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3MQE5_9SPIT)

HSP 1 Score: 99.8 bits (247), Expect = 8.370e-24
Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 VRTAGTFSFRYGRLEVKAKLPKGDWLWPAIWLLPEHNAYGVWPASGEIDMM 153
            +RTAG FSF+YG++EVKA+LPKGDW+WPAIW+LPEH AYG WPASGEID+M
Sbjct:  138 LRTAGKFSFKYGKVEVKAQLPKGDWIWPAIWMLPEHEAYGGWPASGEIDIM 188
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BLAST of mRNA_H-elongata_contig130803.2228.1 vs. uniprot
Match: A0A7S3GC02_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GC02_9EUKA)

HSP 1 Score: 99.8 bits (247), Expect = 1.640e-23
Identity = 40/51 (78.43%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 VRTAGTFSFRYGRLEVKAKLPKGDWLWPAIWLLPEHNAYGVWPASGEIDMM 153
            +RT  +FSF+YGR+EV+AKLPKGDWLWPAIWL+PEHN YG WPASGEID+M
Sbjct:  194 LRTVNSFSFKYGRVEVRAKLPKGDWLWPAIWLIPEHNEYGQWPASGEIDIM 244
[Close]
BLAST of mRNA_H-elongata_contig130803.2228.1 vs. uniprot
Match: A0A1B0D530_PHLPP (GH16 domain-containing protein n=1 Tax=Phlebotomus papatasi TaxID=29031 RepID=A0A1B0D530_PHLPP)

HSP 1 Score: 96.3 bits (238), Expect = 3.880e-23
Identity = 37/51 (72.55%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 VRTAGTFSFRYGRLEVKAKLPKGDWLWPAIWLLPEHNAYGVWPASGEIDMM 153
            VRT  +F+FRYGR+EV+A++P GDWLWPAIWL+P++NAYG WPASGEID+M
Sbjct:  147 VRTVNSFAFRYGRIEVQARIPSGDWLWPAIWLMPKYNAYGTWPASGEIDLM 197
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BLAST of mRNA_H-elongata_contig130803.2228.1 vs. uniprot
Match: A0A7M7NHT0_STRPU (GH16 domain-containing protein n=2 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7NHT0_STRPU)

HSP 1 Score: 99.4 bits (246), Expect = 4.340e-23
Identity = 41/51 (80.39%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 VRTAGTFSFRYGRLEVKAKLPKGDWLWPAIWLLPEHNAYGVWPASGEIDMM 153
            +RTA +FSF+YGRLEV+AKLP GDWLWPAIWLLP+HNAYG WPASGEID++
Sbjct:  313 LRTAESFSFKYGRLEVEAKLPTGDWLWPAIWLLPKHNAYGEWPASGEIDLL 363
[Close]
BLAST of mRNA_H-elongata_contig130803.2228.1 vs. uniprot
Match: I1VBJ9_DAPPU (Gram-negative binding protein 7 (Fragment) n=3 Tax=Daphnia pulex TaxID=6669 RepID=I1VBJ9_DAPPU)

HSP 1 Score: 96.3 bits (238), Expect = 4.510e-23
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 VRTAGTFSFRYGRLEVKAKLPKGDWLWPAIWLLPEHNAYGVWPASGEIDMM 153
            +RT  +FSF+YGR+EV AK+P GDWLWPAIW+LP HNAYG WPASGEID++
Sbjct:   70 IRTVNSFSFKYGRVEVNAKMPTGDWLWPAIWMLPRHNAYGTWPASGEIDLV 120
[Close]
BLAST of mRNA_H-elongata_contig130803.2228.1 vs. uniprot
Match: A0A4D9CN72_9STRA (GH16 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CN72_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.550e-23
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 VRTAGTFSFRYGRLEVKAKLPKGDWLWPAIWLLPEHNAYGVWPASGEIDMM 153
            +RT GTF+F+YGRLEV+AKLP+GDWLWPAIWLLPE N YG WPASGEID+M
Sbjct:  232 LRTTGTFTFQYGRLEVEAKLPRGDWLWPAIWLLPEKNVYGQWPASGEIDVM 282
[Close]
BLAST of mRNA_H-elongata_contig130803.2228.1 vs. uniprot
Match: A0A8J2JSV3_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2JSV3_9HEXA)

HSP 1 Score: 96.3 bits (238), Expect = 2.010e-22
Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 VRTAGTFSFRYGRLEVKAKLPKGDWLWPAIWLLPEHNAYGVWPASGEIDMM 153
            +RT GTFSF YGR+EV+A+LP GDW+WPAIW+LPEH+AYG WP SGEID+M
Sbjct:  141 LRTLGTFSFTYGRVEVRARLPSGDWMWPAIWMLPEHSAYGQWPKSGEIDIM 191
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130803.2228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4K1_9PHAE5.640e-2690.20GH16 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FU25_ECTSI9.620e-2568.12Endo-1,3-beta-glucanase N-terminal, family GH16 n=... [more]
A0A7S3DIZ0_9EUKA2.300e-2478.43Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A7S3MQE5_9SPIT8.370e-2478.43Hypothetical protein (Fragment) n=1 Tax=Favella eh... [more]
A0A7S3GC02_9EUKA1.640e-2378.43Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A1B0D530_PHLPP3.880e-2372.55GH16 domain-containing protein n=1 Tax=Phlebotomus... [more]
A0A7M7NHT0_STRPU4.340e-2380.39GH16 domain-containing protein n=2 Tax=Strongyloce... [more]
I1VBJ9_DAPPU4.510e-2372.55Gram-negative binding protein 7 (Fragment) n=3 Tax... [more]
A0A4D9CN72_9STRA4.550e-2380.39GH16 domain-containing protein n=2 Tax=Monodopsida... [more]
A0A8J2JSV3_9HEXA2.010e-2274.51Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130803contigH-elongata_contig130803:186..1217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score98.2
Seed ortholog evalue1.2e-18
Seed eggNOG ortholog7668.SPU_016163-tr
Preferred nameGNBPB5
EggNOG free text desc.Glycosyl hydrolases family 16
EggNOG OGs2QRX5@2759,38FWG@33154,3BF4Y@33208,3D1TU@33213,COG2273@1
COG Functional cat.G
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.104669-CDS-H-elongata_contig130803:185..2641622929777.104669-CDS-H-elongata_contig130803:185..264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130803 186..264 -
1691679153.753217-CDS-H-elongata_contig130803:185..2641691679153.753217-CDS-H-elongata_contig130803:185..264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130803 186..264 -
1622929777.1201446-CDS-H-elongata_contig130803:1143..12171622929777.1201446-CDS-H-elongata_contig130803:1143..1217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130803 1144..1217 -
1691679153.7621565-CDS-H-elongata_contig130803:1143..12171691679153.7621565-CDS-H-elongata_contig130803:1143..1217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130803 1144..1217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130803.2228.1prot_H-elongata_contig130803.2228.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130803 186..1217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130803.2228.1

>prot_H-elongata_contig130803.2228.1 ID=prot_H-elongata_contig130803.2228.1|Name=mRNA_H-elongata_contig130803.2228.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
VRTAGTFSFRYGRLEVKAKLPKGDWLWPAIWLLPEHNAYGVWPASGEIDM
M
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mRNA from alignment at H-elongata_contig130803:186..1217-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130803.2228.1 ID=mRNA_H-elongata_contig130803.2228.1|Name=mRNA_H-elongata_contig130803.2228.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1032bp|location=Sequence derived from alignment at H-elongata_contig130803:186..1217- (Himanthalia elongata Himel1 dioecious)
GTGCGAACCGCCGGCACGTTTTCATTCCGCTACGGCCGACTCGAGGTGAA
GGCCAAGCTCCCGAAGGGGGACTGGTGAGAGAGACGTTTTCTCCCTCTCT
CTCTCCCTTTACTATTGTCTCTCCCTGTAGACTAAATATTTATGACTCCC
TCTGTTTTTATTTATTTGTTTTTATATATCCCTTTGTTTTTATTATTTTT
ATATACTTTGAAAAAGAAACTTGAACTCATTCTAACCCTCCGAACATCCA
CAATATTTCATAGCGCCGTGAGAGGTGCAATCCAGGGGACCAACTATAAT
CAGGTTCGAATGCGTGCCTTACTACCTTTGAGCTGTTTTAGTTATATTTA
TATACCCCTTTGTTTTTATTTATCGATATCTCCCTTCGAAACCGTGCAGG
TACCGATGTTGCGTGGTTACCCACCACCGTGTCGTTTCCCTCTCATTTCC
TAACGAACGATTAATCGATGTTACCTTTTGTCTACCTACTCTCTACCGTA
TGCCTTGTGCTTGTAACCGTTTTTGCCTGAAACCTTTGGCTTCCAGTGTC
AACCATGCCGTACTGTGGTCGTTTTTGCTTGCTATGTATTGTGATGGGGT
ATTGTGTTACAACGCAATACACCATATTATACCGAAATTCCCGCCCCTCC
GGTGGTATCGAAATTTCATCCCCCCCTCCCCTCCCTTCACTAATAATGTA
GTAACTTTTTATATCGAAAAATGACTATGGGTAAATTTCCAACCCAAAAC
TCCTAGATATATTGGTATACCATGGGGGGGGGGCAGGATAGGATAGAATA
TACAATATACAATATATAATATACAGTACACAAGGTCCCCGTCAAGCGAT
AATCATCGTAAAAATCGTCGTCCTCGACTGCCCCGTCCGTCTGCCTACCT
CGCCCCCTGGCGTCTGAGCATTCCCTCGTTTCCGGTTGATGTATGTACGA
TAGGCTGTGGCCGGCGATCTGGCTCCTTCCGGAACATAATGCCTACGGGG
TATGGCCGGCTTCGGGAGAGATAGACATGATG
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Coding sequence (CDS) from alignment at H-elongata_contig130803:186..1217-

>mRNA_H-elongata_contig130803.2228.1 ID=mRNA_H-elongata_contig130803.2228.1|Name=mRNA_H-elongata_contig130803.2228.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig130803:186..1217- (Himanthalia elongata Himel1 dioecious)
GTGCGAACCGCCGGCACGTTTTCATTCCGCTACGGCCGACTCGAGGTGAA
GGCCAAGCTCCCGAAGGGGGACTGGTGCGAACCGCCGGCACGTTTTCATT
CCGCTACGGCCGACTCGAGGTGAAGGCCAAGCTCCCGAAGGGGGACTGGC
TGTGGCCGGCGATCTGGCTCCTTCCGGAACATAATGCCTACGGGGTATGG
CCGGCTTCGGGAGAGATAGACATGATGGCTGTGGCCGGCGATCTGGCTCC
TTCCGGAACATAATGCCTACGGGGTATGGCCGGCTTCGGGAGAGATAGAC
ATGATG
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