mRNA_H-elongata_contig13072.2225.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13072.2225.1
Unique NamemRNA_H-elongata_contig13072.2225.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13072.2225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13072contigH-elongata_contig13072:5912..6830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size919
Cds size786
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13072.2225.1prot_H-elongata_contig13072.2225.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13072 5956..6741 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929776.807484-UTR-H-elongata_contig13072:5911..59551622929776.807484-UTR-H-elongata_contig13072:5911..5955Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13072 5912..5955 +
1691679153.6272757-UTR-H-elongata_contig13072:5911..59551691679153.6272757-UTR-H-elongata_contig13072:5911..5955Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13072 5912..5955 +
1622929776.831276-UTR-H-elongata_contig13072:6741..68301622929776.831276-UTR-H-elongata_contig13072:6741..6830Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13072 6742..6830 +
1691679153.645573-UTR-H-elongata_contig13072:6741..68301691679153.645573-UTR-H-elongata_contig13072:6741..6830Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13072 6742..6830 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929776.8182266-CDS-H-elongata_contig13072:5955..67411622929776.8182266-CDS-H-elongata_contig13072:5955..6741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13072 5956..6741 +
1691679153.6362891-CDS-H-elongata_contig13072:5955..67411691679153.6362891-CDS-H-elongata_contig13072:5955..6741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13072 5956..6741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13072.2225.1

>prot_H-elongata_contig13072.2225.1 ID=prot_H-elongata_contig13072.2225.1|Name=mRNA_H-elongata_contig13072.2225.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=262bp
MAGSTKREYCAKHAFKEMVNIKKREVCANVWCSTLPTYGKAGSTKREYCA
KHALDGMINLIKRKMCAGSGCYKQPNYGEAGSSKPEYCAEHVLEGMIKVT
RKKMCAGDGCSKQPNYGKAGTTKREYCAEHALEGMINVRKMKNCSGDRCF
KTASDGKARRTKEDYCDEDVMEGMVGVLNNICTGDGCCKSGIYVIAGSTK
REYCAKKRVSKISSSPVSVPKKSKTDNGVGAPFSDTSLDLVLVKSEVSVL
VNADVSVTKSK*
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mRNA from alignment at H-elongata_contig13072:5912..6830+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13072.2225.1 ID=mRNA_H-elongata_contig13072.2225.1|Name=mRNA_H-elongata_contig13072.2225.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=919bp|location=Sequence derived from alignment at H-elongata_contig13072:5912..6830+ (Himanthalia elongata Himel1 dioecious)
AAATCTGTTCCGGTGATGGATGTTCTAAGCAGGCACTCTACGGAATGGCT
GGCAGCACGAAACGGGAGTACTGCGCTAAGCATGCTTTCAAGGAGATGGT
TAACATTAAGAAAAGAGAAGTGTGTGCCAATGTGTGGTGCTCTACGCTGC
CAACCTACGGGAAGGCTGGTAGCACAAAACGAGAGTACTGCGCTAAGCAT
GCCTTGGATGGGATGATTAACTTAATCAAGAGGAAAATGTGTGCCGGTAG
TGGATGTTATAAGCAACCAAACTACGGAGAGGCCGGAAGCTCGAAACCGG
AGTATTGCGCTGAGCATGTCTTGGAGGGGATGATTAAAGTGACTCGGAAA
AAAATGTGTGCCGGTGATGGATGTTCTAAGCAACCAAACTACGGAAAGGC
TGGCACCACGAAACGGGAGTACTGCGCTGAGCATGCCTTGGAGGGGATGA
TCAACGTTAGGAAGATGAAAAATTGTTCCGGTGATAGATGTTTTAAGACT
GCGAGCGATGGAAAGGCCAGAAGGACGAAGGAAGACTACTGCGATGAGGA
TGTCATGGAGGGTATGGTCGGTGTTTTGAACAATATTTGTACCGGTGATG
GATGTTGTAAGAGTGGGATCTACGTTATTGCCGGGAGCACGAAGCGAGAG
TACTGCGCAAAGAAGCGGGTGTCGAAGATCTCTTCATCGCCAGTATCCGT
CCCAAAAAAATCTAAAACCGATAATGGCGTTGGAGCCCCCTTTTCCGATA
CTTCATTAGATCTTGTTTTGGTGAAGTCAGAGGTATCAGTGTTGGTAAAT
GCAGATGTATCAGTGACTAAATCTAAGTAGGTATGTTTTGCAAAGGATTT
AGTTGACGGTTTACTGGCTAACATGAGCGGGGGCGTTGCGCTCCGTCATT
TTTACTTAAGATATTATCT
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Coding sequence (CDS) from alignment at H-elongata_contig13072:5912..6830+

>mRNA_H-elongata_contig13072.2225.1 ID=mRNA_H-elongata_contig13072.2225.1|Name=mRNA_H-elongata_contig13072.2225.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1572bp|location=Sequence derived from alignment at H-elongata_contig13072:5912..6830+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGGCAGCACGAAACGGGAGTACTGCGCTAAGCATGCTTTCAAGGA
GATGGTTAACATTAAGAAAAGAGAAGTGTGTGCCAATGTGTGGTGCTCTA
CGCTGCCAACCTACGGGAAGGCTGGTAGCACAAAACGAGAGTACTGCGCT
AAGCATGCCTTGGATGGGATGATTAACTTAATCAAGAGGAAAATGTGTGC
CGGTAGTGGATGTTATAAGCAACCAAACTACGGAGAGGCCGGAAGCTCGA
AACCGGAGTATTGCGCTGAGCATGTCTTGGAGGGGATGATTAAAGTGACT
CGGAAAAAAATGTGTGCCGGTGATGGATGTTCTAAGCAACCAAACTACGG
AAAGGCTGGCACCACGAAACGGGAGTACTGCGCTGAGCATGCCTTGGAGG
GGATGATCAACGTTAGGAAGATGAAAAATTGTTCCGGTGATAGATGTTTT
AAGACTGCGAGCGATGGAAAGGCCAGAAGGACGAAGGAAGACTACTGCGA
TGAGGATGTCATGGAGGGTATGGTCGGTGTTTTGAACAATATTTGTACCG
GTGATGGATGTTGTAAGAGTGGGATCTACGTTATTGCCGGGAGCACGAAG
CGAGAGTACTGCGCAAAGAAGCGGGTGTCGAAGATCTCTTCATCGCCAGT
ATCCGTCCCAAAAAAATCTAAAACCGATAATGGCGTTGGAGCCCCCTTTT
CCGATACTTCATTAGATCTTGTTTTGGTGAAGTCAGAGGTATCAGTGTTG
GTAAATGCAGATGTATCAGTGACTAAATCTAAGTAGATGGCTGGCAGCAC
GAAACGGGAGTACTGCGCTAAGCATGCTTTCAAGGAGATGGTTAACATTA
AGAAAAGAGAAGTGTGTGCCAATGTGTGGTGCTCTACGCTGCCAACCTAC
GGGAAGGCTGGTAGCACAAAACGAGAGTACTGCGCTAAGCATGCCTTGGA
TGGGATGATTAACTTAATCAAGAGGAAAATGTGTGCCGGTAGTGGATGTT
ATAAGCAACCAAACTACGGAGAGGCCGGAAGCTCGAAACCGGAGTATTGC
GCTGAGCATGTCTTGGAGGGGATGATTAAAGTGACTCGGAAAAAAATGTG
TGCCGGTGATGGATGTTCTAAGCAACCAAACTACGGAAAGGCTGGCACCA
CGAAACGGGAGTACTGCGCTGAGCATGCCTTGGAGGGGATGATCAACGTT
AGGAAGATGAAAAATTGTTCCGGTGATAGATGTTTTAAGACTGCGAGCGA
TGGAAAGGCCAGAAGGACGAAGGAAGACTACTGCGATGAGGATGTCATGG
AGGGTATGGTCGGTGTTTTGAACAATATTTGTACCGGTGATGGATGTTGT
AAGAGTGGGATCTACGTTATTGCCGGGAGCACGAAGCGAGAGTACTGCGC
AAAGAAGCGGGTGTCGAAGATCTCTTCATCGCCAGTATCCGTCCCAAAAA
AATCTAAAACCGATAATGGCGTTGGAGCCCCCTTTTCCGATACTTCATTA
GATCTTGTTTTGGTGAAGTCAGAGGTATCAGTGTTGGTAAATGCAGATGT
ATCAGTGACTAAATCTAAGTAG
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