mRNA_H-elongata_contig13064.2220.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13064.2220.1 vs. uniprot
Match: D7G8B1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B1_ECTSI) HSP 1 Score: 156 bits (395), Expect = 5.600e-41 Identity = 101/236 (42.80%), Postives = 115/236 (48.73%), Query Frame = 1
Query: 16 MCNRGKIAMKATVRVPRSLRGCATIIPGASFVQPGSSFEFSLRFRPDEECLARCMRDGW------------------------------------------------------------------ASGAVRGVAIAVPIRVDVSGQALPAYAVLKATLTTWEVEVDCGGGIK-QAEQEKGGKETKHAKQAVAIADFGWCFIGQSVTRAVSLTSTSLLPLKFGFVSVPMEVRMVGGD 522
+CNRGKIAMKA RVP SLRGC + P FVQPGS FEF LRFRPD E LARC RDGW A A G IA+P+R DV GQALPA AVL+A LT +VEV CG G + + E GG E A+ +FG CF+GQSVTR VSL +TSLLP KFGF+ P EV + D
Sbjct: 877 ICNRGKIAMKAVARVPPSLRGCTSFSPDMGFVQPGSFFEFGLRFRPDPESLARCARDGWGILATSHSDNSSSDKDHPLSLEHNSTVAPGSEQQLLQQQGHRGSRKPGVVADGDAESSTEGSWDPCAKTADAGGIIAIPLRFDVPGQALPARAVLQARLTGSKVEVGCGDGERGEGEGGVGGSE--------AVVNFGPCFVGQSVTRRVSLRNTSLLPAKFGFIGNPAEVDLQPAD 1104
BLAST of mRNA_H-elongata_contig13064.2220.1 vs. uniprot
Match: A0A6H5JIE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIE8_9PHAE) HSP 1 Score: 146 bits (369), Expect = 1.720e-37 Identity = 94/227 (41.41%), Postives = 107/227 (47.14%), Query Frame = 1
Query: 16 MCNRGKIAMKATVRVPRSLRGCATIIPGASFVQPGSSFEFSLRFRPDEECLARCMRDGW----------------------------------------------------------------ASGAVRGVAIAVPIRVDVSGQALPAYAVLKATLTTWEVEVDCGGGIKQAEQEKGGKETKHAKQAVAIADFGWCFIGQSVTRAVSLTSTSLLPLKFGFVSVPMEV 504
+CNRGKIAMKA RVP SLRGC + P FVQPGS FEF LRFRPD E LARC+RDGW A A G IA+P+R DV GQALPA AVL+A LT +VEV CG + A+ +FG CF+GQSVTR VSL +TSLL KFGF+ P EV
Sbjct: 835 ICNRGKIAMKAVARVPPSLRGCTSFSPDMGFVQPGSFFEFGLRFRPDPESLARCVRDGWGILATPHSENSSSDKALSLERNSTVAPGSKQQLLQQQGHRGSRKPGVVTDRDAESSTEGSWDSCAKTADAGGIIAIPLRFDVPGQALPARAVLQARLTGSKVEVGCGDXXXXX-------XXXXXXXSEAVVNFGQCFVGQSVTRRVSLRNTSLLAAKFGFIGNPAEV 1054
BLAST of mRNA_H-elongata_contig13064.2220.1 vs. uniprot
Match: A0A1V9ZSB9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSB9_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.080e-18 Identity = 65/183 (35.52%), Postives = 93/183 (50.82%), Query Frame = 1
Query: 1 RGQLCMCNRGKIAMKATVRVPRSLRGCATIIPGASFVQ-------PGSSFEFSLRFRPDEECLARCM--RDGWASGAVRGVAIAVPIRVDVSGQALPAYAVLKATLTTWEVEVDCGGGIKQAEQEKGGKETKHAKQAVAIADFGWCFIGQSVTRAVSLTSTSLLPLKFGFVSVPMEVRMVGGD 522
RG+L + NRGK+A+K ++VP+ L +P +VQ PG FE ++FRP E + R G A V IA+P++V V Q LP Y VL+A LT+ ++ +VA FG CF QSV + V++T+TS+LP KFGFV +P E+R+ D
Sbjct: 596 RGKLVLRNRGKVALKCQLKVPKYLHDTLEFLPHFGYVQGCAPSAEPGR-FEIQIKFRPTEALWKPVLAHRFGVADLGV----IAIPLQVLVPDQVLPVYFVLRAQLTSGDITF-----------------------SVANITFGPCFTTQSVAQTVTITNTSMLPQKFGFVRLPPEIRVEPND 750
BLAST of mRNA_H-elongata_contig13064.2220.1 vs. uniprot
Match: D0N649_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N649_PHYIT) HSP 1 Score: 91.3 bits (225), Expect = 3.690e-18 Identity = 57/173 (32.95%), Postives = 93/173 (53.76%), Query Frame = 1
Query: 1 RGQLCMCNRGKIAMKATVRVPRSLRGCATIIPGASFVQPGSS---FEFSLRFRPDEECLARCMRDGWASGAVRGVAIAVPIRVDVSGQALPAYAVLKATLTTWEVEVDCGGGIKQAEQEKGGKETKHAKQAVAIADFGWCFIGQSVTRAVSLTSTSLLPLKFGFVSVPMEVRM 510
R +L +CNRGK+A+K ++VP+ L+G P FVQ S F ++FRP+++ R R G+ S A+ G+ +AVP++V V Q +P + +LKA LT E+ +K EKG FG C +G SV+ +++T+ + +P + G S+P +V +
Sbjct: 559 RHELTVCNRGKVALKVHIQVPKPLKGYVEFNPSFGFVQMNSKEGIFPVQVKFRPEDKMWKRIERAGFGSRAL-GM-LAVPVQVSVPDQVVPVFFILKARLTPTELL------LKSGNNEKG-------------LHFGTCCVGHSVSHELTVTNPARVPQRIGVTSLPKDVTV 710
BLAST of mRNA_H-elongata_contig13064.2220.1 vs. uniprot
Match: A0A329RY00_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RY00_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 8.170e-17 Identity = 58/174 (33.33%), Postives = 91/174 (52.30%), Query Frame = 1
Query: 1 RGQLCMCNRGKIAMKATVRVPRSLRGCATIIPGASFVQPGSS----FEFSLRFRPDEECLARCMRDGWASGAVRGVAIAVPIRVDVSGQALPAYAVLKATLTTWEVEVDCGGGIKQAEQEKGGKETKHAKQAVAIADFGWCFIGQSVTRAVSLTSTSLLPLKFGFVSVPMEVRM 510
R QL +CNRGK+A+K V+VP+ L G P FVQ +S F +RFRP+E+ R R G S + G+ +AVP++V V Q +P + +L A LT+ E++ IK +KG FG C +G SV+ +++ + + +P + G S+P +V +
Sbjct: 732 RHQLVVCNRGKVALKVQVQVPKPLAGYVEFNPSFGFVQAAASQDGIFPVQVRFRPEEKMWKRIERAGLGSREL-GM-LAVPVQVVVPDQVVPVFFLLTARLTSAELQ------IKTGRSDKG-------------LHFGACCVGHSVSHELTIANAARVPQRIGVTSLPKDVTV 884
BLAST of mRNA_H-elongata_contig13064.2220.1 vs. uniprot
Match: A0A7S4EB26_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EB26_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 1.120e-16 Identity = 54/168 (32.14%), Postives = 82/168 (48.81%), Query Frame = 1
Query: 1 RGQLCMCNRGKIAMKATVRVPRSLRGCATIIPGASFVQPGSSFEFSLRFRPDEECLARCMRDGWASGAVRGVAIAVPIRVDVSGQALPAYAVLKATLTTWEVEVDCGGGIKQAEQEKGGKETKHAKQAVAIADFGWCFIGQSVTRAVSLTSTSLLPLKFGFVSVPMEV 504
R +L + NRGKIAMK +VP + P FVQPG+SFE ++FRP E + V +A+P+++ Q LP + LKA LT+ ++ + +FG C++G+ ++ ++LT+TSLLP KFGFV + EV
Sbjct: 910 RKKLLIHNRGKIAMKCIAQVPPKYKDYIEYQPDMGFVQPGASFEMGIKFRPQHELVKASKPYCLEDSDV----VAIPLKLKCPDQKLPVWYTLKARLTSGDINF-----------------------STKTFEFGNCYVGEGLSMPLTLTNTSLLPQKFGFVQLKDEV 1050
BLAST of mRNA_H-elongata_contig13064.2220.1 vs. uniprot
Match: A0A662XI79_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XI79_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 1.120e-16 Identity = 57/178 (32.02%), Postives = 88/178 (49.44%), Query Frame = 1
Query: 1 RGQLCMCNRGKIAMKATVRVPRSLRGCATIIPGASFVQPGSS-----FEFSLRFRPDEECLARCMRDGWASGAVRGVAIAVPIRVDVSGQALPAYAVLKATLTTWEVEVDCGGGIKQAEQEKGGKETKHAKQAVAIADFGWCFIGQSVTRAVSLTSTSLLPLKFGFVSVPMEVRMVGG 519
R QL +CNRGK+A+K ++VP++L+ C P FVQ ++ F L+FRP E R R G S + G+ +AVPI++ V Q +P + +L A LT ++ G ++ DFG C IGQSV + +T+++ +P + G VP V + G
Sbjct: 708 RHQLLVCNRGKVALKLQLQVPKALKNCLEFSPSFGFVQAATATQPGQFPIHLKFRPKESMWPRLERSGLGSRDL-GI-LAVPIQILVPDQVVPVFCLLTARLTPSVLKFQLDGDLEAQN-----------------LDFGACCIGQSVGLELRITNSARVPQRVGLTRVPEAVTVADG 866
BLAST of mRNA_H-elongata_contig13064.2220.1 vs. uniprot
Match: A0A662YDT2_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YDT2_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 2.800e-16 Identity = 56/178 (31.46%), Postives = 88/178 (49.44%), Query Frame = 1
Query: 1 RGQLCMCNRGKIAMKATVRVPRSLRGCATIIPGASFVQPGSS-----FEFSLRFRPDEECLARCMRDGWASGAVRGVAIAVPIRVDVSGQALPAYAVLKATLTTWEVEVDCGGGIKQAEQEKGGKETKHAKQAVAIADFGWCFIGQSVTRAVSLTSTSLLPLKFGFVSVPMEVRMVGG 519
R QL +CNRGK+A+K ++VP++L+ C P FVQ ++ F L+FRP E R R G S + G+ +AVPI+V V Q +P + +L A LT ++ G ++ DFG C +GQSV + +T+++ +P + G +P V + G
Sbjct: 706 RHQLLVCNRGKVALKLQLQVPKALKNCLEFSPSFGFVQAATATQPGQFPIHLKFRPKESMWPRLERSGLGSRDL-GI-LAVPIQVLVPDQVVPVFCLLTARLTPSVLKFQLDGDLEARN-----------------LDFGACCVGQSVGLELRITNSARVPQRVGLTRLPEAVTVADG 864
BLAST of mRNA_H-elongata_contig13064.2220.1 vs. uniprot
Match: T0QEI5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QEI5_SAPDV) HSP 1 Score: 82.8 bits (203), Expect = 3.260e-15 Identity = 57/180 (31.67%), Postives = 88/180 (48.89%), Query Frame = 1
Query: 1 RGQLCMCNRGKIAMKATVRVPRSLRGCATIIPGASFVQ---PGSS---FEFSLRFRPDEECLARCMRDGWASGAVRGVAIAVPIRVDVSGQALPAYAVLKATLTTWEVEVDCGGGIKQAEQEKGGKETKHAKQAVAIADFGWCFIGQSVTRAVSLTSTSLLPLKFGFVSVPMEVRMVGGD 522
RG+L + NRGK+ +K ++VP+ L+ +P +VQ PG+ FE ++FRP + + + G +A+P++V V Q LP Y VL+A LT+ ++E + FG C QSV + V +T+ S+LP KFGFV +P EVR+ D
Sbjct: 611 RGKLLLRNRGKVPLKCQLKVPKYLKEALEFVPHFGYVQGCSPGAEPGRFEIQIKFRPTQSLWTAIIAHKF--GLEHLGVMAIPLQVLVPDQVLPVYFVLRAQLTSGDLEFSSPTIL-----------------------FGACATTQSVAQRVRITNRSMLPQKFGFVHLPPEVRVEPSD 765
BLAST of mRNA_H-elongata_contig13064.2220.1 vs. uniprot
Match: A0A6A3UMM1_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UMM1_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 4.490e-15 Identity = 54/175 (30.86%), Postives = 90/175 (51.43%), Query Frame = 1
Query: 1 RGQLCMCNRGKIAMKATVRVPRSLRGCATIIPGASFVQPG-----SSFEFSLRFRPDEECLARCMRDGWASGAVRGVAIAVPIRVDVSGQALPAYAVLKATLTTWEVEVDCGGGIKQAEQEKGGKETKHAKQAVAIADFGWCFIGQSVTRAVSLTSTSLLPLKFGFVSVPMEVRM 510
R QL +CNRGK+A+K V+VP+ L + PG FVQ F ++FRP+E R R G S A+ G+ +AVP++V V Q +P + +L A LT ++++ +K E G FG C +G V+ +++++++ +P + G S+P +V +
Sbjct: 759 RHQLVVCNRGKVALKIQVQVPKVLANYVELTPGFGFVQASVASQEGKFPVQVKFRPEERMWKRVERAGLGSRAL-GM-LAVPVQVVVPDQVVPVFFLLTARLTPTTLQLE----VKTGSSEGG-------------LHFGACCVGHGVSHELTISNSARVPQRVGVTSLPKDVTI 914 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13064.2220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13064.2220.1 >prot_H-elongata_contig13064.2220.1 ID=prot_H-elongata_contig13064.2220.1|Name=mRNA_H-elongata_contig13064.2220.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp MCNRGKIAMKATVRVPRSLRGCATIIPGASFVQPGSSFEFSLRFRPDEECback to top mRNA from alignment at H-elongata_contig13064:381..1169+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13064.2220.1 ID=mRNA_H-elongata_contig13064.2220.1|Name=mRNA_H-elongata_contig13064.2220.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=789bp|location=Sequence derived from alignment at H-elongata_contig13064:381..1169+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13064:381..1169+ >mRNA_H-elongata_contig13064.2220.1 ID=mRNA_H-elongata_contig13064.2220.1|Name=mRNA_H-elongata_contig13064.2220.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig13064:381..1169+ (Himanthalia elongata Himel1 dioecious)back to top |