mRNA_H-elongata_contig13061.2219.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13061.2219.1 vs. uniprot
Match: D7FP90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP90_ECTSI) HSP 1 Score: 456 bits (1172), Expect = 2.180e-158 Identity = 208/281 (74.02%), Postives = 235/281 (83.63%), Query Frame = 1
Query: 1 CPNDVHVFDFERHHWAEVKVWGDAPLPRELFGMCAGPISGTIIVAGGTGVEMDSLRADRIEFDDPSRTWTGVLRDSKRTPCRFYGQSVCSYGDNVLLFGGSTGL*YTNQLFEYKIQIIKWRRLVTSGRKPSPRYKHQTVVVEDKLYVIEGGCFKPDQSNIDLYCLNLKTLVWEEIRMNGEPRKDRVAHTCSFDAETDTIFLWGGFTSDLSRLQDFFGFHCPTATWVKINEESVPTPVASGATALANVPPVWAFHSAAFFQGALYVFSGANGDVRYCDVWRF 843
C NDV+VF+ E H W++V V GDAPLPR FGMCAGP GT+IVAGGTGVEMDSLRAD +E++ P+RTWT +L DS+ TPC+FYGQSVC+YGDN+LLFGGSTGL YTN LFEY ++ KW+RLVTSGR PSPRYKHQ VVV K+YVI GGCFKP+QS IDLYCL+L++LVWEE M GE K RVAH+CSFDAETDTI+LWGGFTS+LSRLQDFFGFHCPTATWV++ EE PVA GAT L PP AFHSAAFFQG LYVFSGANGDVRY DVWRF
Sbjct: 77 CLNDVYVFNLELHRWSKVTVKGDAPLPRASFGMCAGPAPGTLIVAGGTGVEMDSLRADVVEYNVPNRTWTQILTDSEETPCKFYGQSVCTYGDNLLLFGGSTGLHYTNDLFEYNVRTNKWKRLVTSGRMPSPRYKHQAVVVGHKMYVIGGGCFKPEQSGIDLYCLDLRSLVWEETTMKGELPKARVAHSCSFDAETDTIYLWGGFTSELSRLQDFFGFHCPTATWVRMAEEPTQAPVAGGATDLVGAPPARAFHSAAFFQGGLYVFSGANGDVRYSDVWRF 357
BLAST of mRNA_H-elongata_contig13061.2219.1 vs. uniprot
Match: D7FP81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP81_ECTSI) HSP 1 Score: 365 bits (936), Expect = 9.930e-123 Identity = 172/283 (60.78%), Postives = 207/283 (73.14%), Query Frame = 1
Query: 1 CPNDVHVFDFERHHWAEVKVWGDAPLPRELFGMCAGPISGTIIVAGGTGVEMDSLRADRIEFDDPSRTWTGVLRDSKRTPCRFYGQSVCSYGDNVLLFGGSTGL*YTNQLFEYKIQIIKWRRLVTSGRKPSPRYKHQTVVVEDKLYVIEGGCFKPDQSNIDLYCLNLKTLVWE--EIRMNGEPRKDRVAHTCSFDAETDTIFLWGGFTSDLSRLQDFFGFHCPTATWVKINEESVPTPVASGATALANVPPVWAFHSAAFFQGALYVFSGANGDVRYCDVWRF 843
C ND++VFD + H W GD+ R FGMC GP GT+IVAGGTGVEMDSLRAD +E++ +RTWT VL DS+ TPC+FYGQSVC+YGDN+LLFGGSTGL Y+N LFEY + +WR+L T+GRKPSPRYKHQ V V DK+YVI GGCFKP+QS+IDLYCL+LKTLVWE E M G+ K RVAH+CSFD I+LWGGFT +LSRL DF+ ++C +A W ++ V G A PP AFHSA F GALY+FSGANGD+RY DVWR+
Sbjct: 72 CLNDMYVFDLQLHRWERAVPKGDSIHARASFGMCQGPTPGTVIVAGGTGVEMDSLRADVVEYNTRTRTWTSVLTDSEETPCKFYGQSVCTYGDNLLLFGGSTGLHYSNDLFEYNVCSNRWRKLTTTGRKPSPRYKHQAVAVGDKMYVIGGGCFKPEQSSIDLYCLDLKTLVWEMDETEMKGDLPKARVAHSCSFDPVGGDIYLWGGFTGELSRLADFYVYNCKSACWRRL--------VMEGGDAS---PPARAFHSAVFHDGALYLFSGANGDIRYNDVWRY 343
BLAST of mRNA_H-elongata_contig13061.2219.1 vs. uniprot
Match: A0A836CEB6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEB6_9STRA) HSP 1 Score: 358 bits (919), Expect = 6.330e-120 Identity = 168/289 (58.13%), Postives = 208/289 (71.97%), Query Frame = 1
Query: 1 CPNDVHVFDFERHHWAEVKVWGDAPLPRELFGMCAGPISG-TIIVAGGTGVEMDSLRADRIEFDDPSRTWTGVLRDSKRTPCRFYGQSVCSYGDNVLLFGGSTGL*YTNQLFEYKIQIIKWRRLVTSGRKPSPRYKHQTVVVEDKLYVIEGGCFKPDQSNIDLYCLNLKTLVWEEIRMNGEPRKDRVAHTCSFDAETDTIFLWGGFTSDLSRLQDFFGFHCPTATWVKINEESVPTPVASGATALAN-------VPPVWAFHSAAFFQGALYVFSGANGDVRYCDVWRF 843
C NDV+ FD + H W V V G+ PLPR FGMCA P +I+VAGGTGVEMDSLRAD +EFD +R W V+ DS+ TPCRFYGQS+C+YG+++LLFGGSTG+ YTN L+EY +WR+L T+GRKP+PRYKHQ V+V +YVI GGCFKP+QS ID++ L+L TL W+E+ +G+ K RVAH+C +DA T TIFLWGGFTS+LSRLQDF+ HC TATW ++ V SG +PP AFH+A FF+ ALYVFSGANGDVRY DVWR+
Sbjct: 61 CLNDVYTFDLDTHQWNAVAVNGEPPLPRASFGMCARPSPHRSIVVAGGTGVEMDSLRADIVEFDTRTRAWRRVVTDSEETPCRFYGQSLCTYGESLLLFGGSTGMHYTNDLYEYNTTTQRWRKLTTTGRKPTPRYKHQAVIVGASMYVIGGGCFKPEQSTIDVHRLDLATLAWDEVATSGDVPKSRVAHSCCYDAGTGTIFLWGGFTSELSRLQDFYTLHCETATWRAA--AALAPAVVSGVVXXXXXXXXXXXLPPARAFHAACFFEDALYVFSGANGDVRYSDVWRY 347
BLAST of mRNA_H-elongata_contig13061.2219.1 vs. uniprot
Match: A0A836CQE2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQE2_9STRA) HSP 1 Score: 341 bits (875), Expect = 2.490e-113 Identity = 167/290 (57.59%), Postives = 198/290 (68.28%), Query Frame = 1
Query: 1 CPNDVHVFDFERHHWAEVKVWGDA-PLPRELFGMCAGPISGTIIVAGGTGVEMDSLRADRIEFDDPSRTWTGVLRDSKRTPCRFYGQSVCSYGDNVLLFGGSTGL*YTNQLFEYKIQIIKWRRLVTSGRKPSPRYKHQTVVVEDKLYVIEGGCFKPDQSNIDLYCLNLKTLVWEEIRMNGEPRKDRVAHTCSFDAETDTIFLWGGFTSDLSRLQDFFGFHCPTATWVKINEESVPTPVASGATALANV--------PPVWAFHSAAFFQGALYVFSGANGDVRYCDVWRF 843
C ND++ FD + H W V GD+ P R FGMCAGP + TIIVAGGTGVEMDSLR+D +EFD ++ W+ + D + P RFYGQ+VC YG +LLFGGSTGL YTN LFEY + WR+L T+G++PSPRYKHQ VVV D +YVI GGCFKP+Q+ IDLY L+L+TLVW+ M GE + RVAH+CSFD T TI+LWGGFT +LSRLQDFF + A W +I TP A A A P AFHSA F GALYVFSGANGDVRY DVWRF
Sbjct: 70 CLNDMYTFDLDSHRWETVTAKGDSVPSARASFGMCAGPAANTIIVAGGTGVEMDSLRSDVLEFDTRTKLWSKITGDGEDAPSRFYGQTVCRYGSVLLLFGGSTGLHYTNDLFEYNMTTNCWRKLATTGKRPSPRYKHQAVVVGDAMYVIGGGCFKPEQAAIDLYRLDLRTLVWDTPAMGGEVPRARVAHSCSFDPATSTIYLWGGFTGELSRLQDFFAYDTARAEWAEIK-----TPPADAAAPSAXXXXXXXXXXPYARAFHSAVFHDGALYVFSGANGDVRYNDVWRF 354
BLAST of mRNA_H-elongata_contig13061.2219.1 vs. uniprot
Match: A0A835ZFC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFC9_9STRA) HSP 1 Score: 339 bits (869), Expect = 2.860e-112 Identity = 163/291 (56.01%), Postives = 196/291 (67.35%), Query Frame = 1
Query: 1 CPNDVHVFDFERHHWAEVKVWGDA-PLPRELFGMCAGPISGTIIVAGGTGVEMDSLRADRIEFDDPSRTWTGVLRDSKRTPCRFYGQSVCSYGDNVLLFGGSTGL*YTNQLFEYKIQIIKWRRLVTSGRKPSPRYKHQTVVVEDKLYVIEGGCFKPDQSNIDLYCLNLKTLVWEEIRMNGEPRKDRVAHTCSFDAETDTIFLWGGFTSDLSRLQDFFGFHCPTATWVKINEESVPTPVASGATALAN---------VPPVWAFHSAAFFQGALYVFSGANGDVRYCDVWRF 843
C ND++ FD +RH W + G+ P R F MC+GP T+IVAGGTGVEMDSLR+D ++FD +R W + RD P +FYGQ+VC YGD +LLFGGSTGL YTN LFEY + WR+LVT GR+PSPRYKHQ VVV D +YVI GGCFKP+QS ID+YCLNL+TLVW + R G + RVAH+CSFD ET TI+LWGGFT +LSRLQDF+ +H PT W +I P AFHSA F++GALYVFSGANGDVRY DVWR+
Sbjct: 75 CLNDMYTFDLDRHVWELIPHRGEEMPTARASFAMCSGPDEKTLIVAGGTGVEMDSLRSDILQFDTRTRRWIKLHRDGDDAPSKFYGQTVCRYGDVLLLFGGSTGLHYTNDLFEYNVVTNCWRKLVTQGRRPSPRYKHQAVVVGDFMYVIGGGCFKPEQSAIDMYCLNLRTLVWAQPRSAGAVPRARVAHSCSFDPETCTIYLWGGFTGELSRLQDFYAYHAPTGEWTEIRTAPPXXXXXXXXXXXXXXXXXXXXXVAPYARAFHSAVFYKGALYVFSGANGDVRYNDVWRY 365
BLAST of mRNA_H-elongata_contig13061.2219.1 vs. uniprot
Match: A0A835Z314_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z314_9STRA) HSP 1 Score: 233 bits (594), Expect = 5.680e-71 Identity = 123/280 (43.93%), Postives = 152/280 (54.29%), Query Frame = 1
Query: 7 NDVHVFDFERHHWAEVKVWGDAPLPRELFGMCAGPI-SGTIIVAGGTGVEMDSLRADRIEFDDPSRTWTGVLRDSKRTPCRFYGQSVCSYGDNVLLFGGSTGL*YTNQLFEYKIQIIKWRRLVTSGRKPSPRYKHQTVVVEDKLYVIEGGCFKPDQSNIDLYCLNLKTLVWEEIRMNGEPRKDRVAHTCSFDAETDTIFLWGGFTSDLSRLQDFFGFHCPTATWVKINEESVPTPVASGATALANVPPVWAFHSAAFFQGALYVFSGANGDVRYCDVWRF 843
ND + F+ E H W VKV + P R F MCA P S +I VAGGTG + DSL D +EFD +RTW+ V+ D TP YGQS C+YG +++LFGG++GL Y N G F P S +D+YCLNL TLVW+ + +GE + RVAHTCSFD TDTI +WGGF+S L RLQDF HC TATW T +N PP AFH+A F +GALY+F GA+GD RY DVWR+
Sbjct: 66 NDAYSFNLETHQWQLVKVNSEPPTARSSFSMCAPPDGSRSIFVAGGTGADPDSLCHDIVEFDTHARTWSRVV-DVGDTPWILYGQSQCAYGGSLILFGGTSGLEYVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAFMPQYSVVDVYCLNLITLVWKAVNTSGEAPQSRVAHTCSFDGATDTILMWGGFSSTLHRLQDFHILHCSTATWT---------------TETSNQPPPRAFHAACFHKGALYLFCGADGDNRYNDVWRY 329
BLAST of mRNA_H-elongata_contig13061.2219.1 vs. uniprot
Match: A0A7S2XVZ9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVZ9_9STRA) HSP 1 Score: 228 bits (582), Expect = 3.370e-69 Identity = 114/284 (40.14%), Postives = 160/284 (56.34%), Query Frame = 1
Query: 1 CPNDVHVFDFERHHWAEVKVWGDAPLPRELFGMCAGPISGTIIVAGGTGVEMDSLRADRIEFDDPSRTWTGVLRDSKRTPCRFYGQSVCSYGDNVLLFGGSTGL*YTNQLFEYKIQIIKWRRLVTSGRKPSPRYKHQTVVVEDKLYVIEGGCFKPDQSNIDLYCLNLKTLVWEEIRMNGEPRKDRVAHTCSFDAETDTIFLWGGFTSDLSRLQDFFGFHCPTATW---VKINEESVPTPVASGATALANVPPVWAFHSAAFFQGALYVFSGANGDVRYCDVWRF 843
C +D VFDF W+ V+ G+ P R FGM GP GT+IVAGGTG +MD+ +D E++ S TW +++ K C++YGQS+C Y N+ FGGS G Y+N L+ Y + + T+G+ P PRYK Q +VV+D L VI GG ++P ID++ L+L TL W + + +G + RVAHTC++D T I+LWGGF L RL DF T W + ++ +S P AFH + G+ Y+F GA+GD R+ DVWRF
Sbjct: 74 CLSDFLVFDFSTQSWSAVQTRGEPPHARASFGMSRGPDPGTLIVAGGTGQDMDTF-SDIYEYNISSSTWRLLIKGEKANFCKYYGQSICEYKGNLFFFGGSRGRTYSNVLYRYDCAQEEGAAVPTTGKAPCPRYKQQMMVVKDSLLVIGGGNYRPPTHQIDVHELDLLTLNWSQWKTSGNVPQGRVAHTCTYDENTHQIYLWGGFNVVLHRLNDFHVLDIATRKWSTIISLDNQS---------------PRPRAFHCSCLHDGSFYIFGGADGDFRHSDVWRF 341
BLAST of mRNA_H-elongata_contig13061.2219.1 vs. uniprot
Match: A0A7S2XUR3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUR3_9STRA) HSP 1 Score: 197 bits (502), Expect = 1.110e-58 Identity = 88/229 (38.43%), Postives = 138/229 (60.26%), Query Frame = 1
Query: 157 DSLRADRIEFDDPSRTWTGVLRDSKRTPCRFYGQSVCSYGDNVLLFGGSTGL*YTNQLFEYKIQIIKWRRLVTSGRKPSPRYKHQTVVVEDKLYVIEGGCFKPDQSNIDLYCLNLKTLVWEEIRMNGEPRKDRVAHTCSFDAETDTIFLWGGFTSDLSRLQDFFGFHCPTATWVKINEESVPTPVASGATALANVPPVWAFHSAAFFQGALYVFSGANGDVRYCDVWRF 843
+ L +D EF SRTW + + CR YGQS CS+ ++ FGGS+G Y+N+ + ++ +KW ++ T+G KP+PRYKHQ VVV ++++ GG ++P + +D++ LNLKTL W+E++ G P + RVAHTC +D ++TI++WGGF L RL+DF+ T W I+ + P AFH++ +G+LY+F GA+G R+ DVW++
Sbjct: 2 EELCSDLFEFSTLSRTWRRLASSAF---CRLYGQSCCSFESKLIFFGGSSGKQYSNETVFFDVKQMKWEKISTTGPKPTPRYKHQAVVVGHSMFILGGGNYRPARDKMDVHMLNLKTLEWQEVKCTGMPPEARVAHTCQYDPLSNTIYVWGGFNGRLVRLKDFYALDLGTMKWDSIHCST-------------GCPSARAFHASCLCEGSLYIFGGADGHKRHADVWKY 214
BLAST of mRNA_H-elongata_contig13061.2219.1 vs. uniprot
Match: A0A7S2UZD9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZD9_9STRA) HSP 1 Score: 201 bits (510), Expect = 2.700e-58 Identity = 94/281 (33.45%), Postives = 156/281 (55.52%), Query Frame = 1
Query: 10 DVHVFDFERHHWAEVKVWGDAPLPRELFGMCAGPISGTIIVAGGTGVEMDSLRADRIEFDDPSRTWTGVLRDSKRTPCRFYGQSVCSYGDNVLLFGGSTGL*YTNQLFEYKIQIIKWRRLVTSGRKPSPRYKHQTVVVEDKLYVIEGGCFKPDQSNIDLYCLNLKTLVWEEIRMNGEPRKDRVAHTCSFDAETDTIFLWGGFTSDLSRLQDFFGFHCPTATWVKI---NEESVPTPVASGATALANVPPVWAFHSAAFFQGALYVFSGANGDVRYCDVWRF 843
D+ FD + W+ ++ G P PR +C GP GT IVAGG + +D EF+ SR W + + + C+FYGQSV SYG +++ FGG +G Y+N ++ ++ + L T+G PSPRYK + V+++ +Y+I G + P + +D++ L+L+ LVW+++ +G + R AH+C D + +++WGG++ L RL D + + W ++ E P P A FH + FF+GA+Y+F G++G+ R+CDVWR+
Sbjct: 104 DLVCFDLKTLKWSPIRTKGFGPFPRTSAAICKGPYEGTFIVAGGASTH-GLVYSDLFEFNVYSRQWRKLKHRADASFCKFYGQSVRSYGSSLIFFGGFSGGAYSNAVYMLDVESGEGSYLNTTGHAPSPRYKQEMVIIDHSMYIIGGSDYTPTINKMDVFILDLQALVWKQVSTSGPIPECRTAHSCVVDDKMQRLYVWGGYSGSLKRLDDGYMLDLQSNMWTQLFSFTNEVTPAPRA--------------FHCSCFFEGAIYIFGGSDGESRHCDVWRY 369
BLAST of mRNA_H-elongata_contig13061.2219.1 vs. uniprot
Match: A0A7S3XN17_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN17_HETAK) HSP 1 Score: 199 bits (507), Expect = 2.550e-57 Identity = 101/282 (35.82%), Postives = 155/282 (54.96%), Query Frame = 1
Query: 10 DVHVFDFERHHWAEVKVWGDAPLPRELFGMCAGPISGTIIVAGGTGVEMDSLRADRI-EFDDPSRTWTGVL-RDSKRTPCRFYGQSVCSYGDNVLLFGGST-GL*YTNQLFEYKIQIIKWRRLVTSGRKPSPRYKHQTVVVEDKLYVIEGGCFKPDQSNIDLYCLNLKTLVWEEIRMNGEPRKD-RVAHTCSFDAETDTIFLWGGFTSDLSRLQDFFGFHCPTATWVKINEESVPTPVASGATALANVPPVWAFHSAAFFQGALYVFSGANGDVRYCDVWRF 843
D++ FD E W +K GD P PR F MC +I + GGT ++ L + +F +R W V+ R+ R++G+S +Y +++L FGG G +TN+L + + + W RL T+G P RYKHQ ++V+DKLY++ GGC+ P ID +CL+L+T+VW ++ M+G + R AHTC +D +++WGGF L LQD T W + + G N PP +FH+A F +G+LY F+G++G+ RY DV R+
Sbjct: 141 DINSFDLETRRWNRIKDSGDVPCPRTAFAMCWDK-QDSIFLWGGTDHDLQGLADQEVYQFHIHARKWERVVTRNRGILNLRYFGRSATAYKNSLLFFGGGVKGGRFTNELLQLDLDTMVWSRLETTGEAPCARYKHQALLVQDKLYIVGGGCYLPPTEEIDAFCLDLRTMVWAKLAMSGAALPEGRAAHTCEYDPVGHALYMWGGFNKSLVPLQDLHRLDLATGAWTALCRNAK-----EGGGG--NAPPCRSFHAACFHRGSLYSFNGSDGERRYDDVARY 414 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13061.2219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13061.2219.1 >prot_H-elongata_contig13061.2219.1 ID=prot_H-elongata_contig13061.2219.1|Name=mRNA_H-elongata_contig13061.2219.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp MNGEPRKDRVAHTCSFDAETDTIFLWGGFTSDLSRLQDFFGFHCPTATWVback to top mRNA from alignment at H-elongata_contig13061:1975..2820+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13061.2219.1 ID=mRNA_H-elongata_contig13061.2219.1|Name=mRNA_H-elongata_contig13061.2219.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=846bp|location=Sequence derived from alignment at H-elongata_contig13061:1975..2820+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13061:1975..2820+ >mRNA_H-elongata_contig13061.2219.1 ID=mRNA_H-elongata_contig13061.2219.1|Name=mRNA_H-elongata_contig13061.2219.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig13061:1975..2820+ (Himanthalia elongata Himel1 dioecious)back to top |